Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 110.54240 * 2 1 4 4 O 1.42097 * 110.54630 * 223.25139 * 2 1 3 5 5 N 1.65600 * 104.45262 * 111.62227 * 2 1 3 6 6 C 1.47422 * 125.64440 * 90.02106 * 5 2 1 7 7 C 1.54912 * 104.82882 * 155.84023 * 6 5 2 8 8 C 1.55159 * 101.58259 * 37.01223 * 7 6 5 9 9 H 1.09001 * 110.71814 * 83.03853 * 8 7 6 10 10 C 1.53002 * 110.72050 * 206.13436 * 8 7 6 11 11 S 1.81402 * 109.47127 * 291.15947 * 10 8 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 8 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 8 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 8 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 C 1.53004 * 109.47094 * 165.27799 * 15 14 11 17 17 C 1.50701 * 109.47038 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00406 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00112 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99790 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00215 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47382 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47098 * 120.00653 * 21 19 17 24 24 H 1.48505 * 109.47180 * 240.00620 * 21 19 17 25 25 C 1.47313 * 125.61930 * 270.16926 * 5 2 1 26 26 H 1.09007 * 109.47131 * 308.37635 * 1 2 3 27 27 H 1.09001 * 109.47346 * 68.37401 * 1 2 3 28 28 H 1.09003 * 109.47059 * 188.37489 * 1 2 3 29 29 H 1.09001 * 110.37161 * 37.00622 * 6 5 2 30 30 H 1.09005 * 110.37158 * 274.67621 * 6 5 2 31 31 H 1.08996 * 111.00624 * 278.93475 * 7 6 5 32 32 H 1.09001 * 111.03863 * 155.10052 * 7 6 5 33 33 H 1.08990 * 109.47200 * 171.15366 * 10 8 7 34 34 H 1.09004 * 109.47018 * 51.15165 * 10 8 7 35 35 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 36 36 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 37 37 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 38 38 H 1.08994 * 109.46776 * 299.99858 * 16 15 14 39 39 H 1.09002 * 109.46826 * 60.00127 * 16 15 14 40 40 H 0.96996 * 120.00150 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.06474 * 61.74881 * 25 5 2 42 42 H 1.09004 * 109.85078 * 300.49336 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 2.4421 -2.0111 1.8226 7 6 3.3702 -1.9925 3.0627 8 6 2.8339 -0.7581 3.8348 9 1 1.9645 -1.0266 4.4350 10 6 3.9295 -0.1513 4.7136 11 16 4.3151 -1.2902 6.0719 12 8 4.9483 -2.4617 5.5760 13 8 3.2227 -1.3749 6.9768 14 7 5.4998 -0.5188 6.9342 15 6 5.2043 0.7423 7.6188 16 6 6.3189 1.0524 8.6201 17 6 6.0152 2.3499 9.3239 18 1 5.1169 2.8983 9.0817 19 6 6.8837 2.8364 10.2779 20 7 7.9774 2.1684 10.5733 21 14 6.5069 4.4443 11.1508 22 1 5.2254 4.9955 10.6417 23 1 6.3949 4.2003 12.6113 24 1 7.6007 5.4154 10.8936 25 6 2.4380 0.2159 2.7052 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.9276 -2.5253 0.9931 30 1 1.4943 -2.4917 2.0653 31 1 4.4103 -1.8488 2.7702 32 1 3.2545 -2.9023 3.6518 33 1 3.5832 0.7978 5.1224 34 1 4.8247 0.0160 4.1146 35 1 6.3906 -0.8997 6.9827 36 1 5.1397 1.5469 6.8863 37 1 4.2551 0.6550 8.1474 38 1 6.3835 0.2478 9.3525 39 1 7.2682 1.1397 8.0915 40 1 8.5886 2.5108 11.2441 41 1 1.5189 0.7382 2.9713 42 1 3.2400 0.9348 2.5374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189136926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = -147.715102 kcal Electronic energy + Delta-G solvation = -25629.936834 eV Core-core repulsion = 21671.266707 eV Total energy + Delta-G solvation = -3958.670127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.16872 -37.52954 -36.95160 -36.35624 -35.81074 -35.42426 -33.22694 -32.77657 -30.10753 -29.84030 -29.16786 -26.93107 -24.52809 -22.89119 -21.26720 -21.05992 -19.42572 -19.13846 -18.13240 -17.60768 -17.17069 -16.60606 -16.34684 -16.19394 -15.78148 -15.39055 -14.66924 -14.50309 -14.36222 -14.23863 -13.90550 -13.80451 -13.67131 -13.59251 -13.25043 -12.68357 -12.59683 -12.52065 -12.45274 -12.27453 -12.06023 -11.88888 -11.81187 -11.72259 -11.51639 -11.47686 -11.30371 -11.15428 -11.12988 -10.71019 -10.62704 -10.42286 -9.62518 -9.45496 -9.29183 -8.93866 -8.44574 -6.11232 -4.15009 -0.23702 0.38661 2.15337 2.95577 3.26179 3.34209 3.37562 3.43323 3.55682 3.83579 3.91671 4.06818 4.20555 4.28770 4.36495 4.40182 4.49594 4.79971 4.83097 4.96162 5.00869 5.14375 5.15393 5.25712 5.31513 5.39068 5.49261 5.58280 5.67077 5.69406 5.80714 5.92151 6.10970 6.40630 6.67590 7.36932 7.52467 7.61487 7.87153 8.24191 8.91176 9.49982 11.00184 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002364 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.466450 B =11840.608950 C =12848.142446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.628 3.372 3 O -0.950 6.950 4 O -0.952 6.952 5 N -1.016 6.016 6 C 0.117 3.883 7 C -0.145 4.145 8 C -0.088 4.088 9 H 0.101 0.899 10 C -0.631 4.631 11 S 2.610 3.390 12 O -0.965 6.965 13 O -0.957 6.957 14 N -1.114 6.114 15 C 0.114 3.886 16 C 0.017 3.983 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.131 3.869 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 -6.930 -20.494 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.722 3.278 3 O -0.941 6.941 4 O -0.943 6.943 5 N -0.855 5.855 6 C -0.008 4.008 7 C -0.183 4.183 8 C -0.109 4.109 9 H 0.119 0.881 10 C -0.760 4.760 11 S 2.702 3.298 12 O -0.955 6.955 13 O -0.947 6.947 14 N -0.875 5.875 15 C -0.010 4.010 16 C -0.022 4.022 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C 0.005 3.995 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.891 -7.368 -20.963 26.749 hybrid contribution -0.296 1.388 0.580 1.534 sum -15.187 -5.980 -20.383 26.113 Atomic orbital electron populations 1.30589 1.28703 1.11626 1.11468 1.04412 0.77563 0.73855 0.72007 1.93625 1.77513 1.37570 1.85378 1.93611 1.77626 1.61923 1.61125 1.58717 1.84857 1.15625 1.26260 1.22070 0.99480 0.80813 0.98463 1.23187 1.00857 0.98075 0.96227 1.21933 0.97228 0.95840 0.95896 0.88069 1.30748 1.08055 1.18389 1.18766 1.04879 0.74444 0.74910 0.75615 1.93576 1.75111 1.44736 1.82046 1.93600 1.55195 1.86005 1.59924 1.55548 1.27594 1.38307 1.66041 1.21679 1.02131 0.81520 0.95713 1.19284 0.92462 0.97300 0.93124 1.21122 1.07500 1.06353 1.21420 0.92194 1.25015 0.94995 0.97547 0.96794 1.69967 1.11665 1.38763 1.32672 0.86471 0.78350 0.83304 0.79479 1.19617 1.20935 1.20976 1.21813 1.01856 0.93173 0.82624 0.85313 0.85391 0.85350 0.89143 0.91114 0.88989 0.88533 0.84211 0.84358 0.74901 0.92997 0.91301 0.95552 0.95768 0.92843 0.90877 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.45 10.99 101.05 1.11 -1.34 16 2 S 2.63 19.79 6.29 -107.50 -0.68 19.11 16 3 O -0.95 -10.62 17.60 -57.54 -1.01 -11.63 16 4 O -0.95 -10.17 17.28 -57.54 -0.99 -11.17 16 5 N -1.02 -7.48 3.63 -111.20 -0.40 -7.89 16 6 C 0.12 0.79 7.07 -2.53 -0.02 0.77 16 7 C -0.14 -1.17 5.52 -24.58 -0.14 -1.30 16 8 C -0.09 -0.72 2.94 -88.79 -0.26 -0.98 16 9 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.63 -5.83 5.40 37.16 0.20 -5.63 16 11 S 2.61 34.87 5.28 -107.50 -0.57 34.30 16 12 O -0.96 -14.40 16.96 -57.54 -0.98 -15.38 16 13 O -0.96 -16.06 17.51 -57.54 -1.01 -17.06 16 14 N -1.11 -17.15 5.89 -10.61 -0.06 -17.22 16 15 C 0.11 2.11 6.06 -4.04 -0.02 2.08 16 16 C 0.02 0.41 5.12 -27.88 -0.14 0.26 16 17 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 21 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 0.99 6.52 -2.91 -0.02 0.97 16 26 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 27 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.77 7.98 -51.93 -0.41 0.35 16 32 H 0.10 0.75 7.81 -51.93 -0.41 0.34 16 33 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.14 1.09 8.06 -51.92 -0.42 0.67 16 35 H 0.42 6.14 8.62 -34.47 -0.30 5.85 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.29 7.70 -51.93 -0.40 0.89 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.68 7.82 -51.93 -0.41 0.27 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -38.08 371.89 -10.59 -48.67 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.51 Total: -0.15 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 0.30 Total: -17.94 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.27 Total: -50.14 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -3.99 Total: -55.24 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -1.24 Total: 53.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.08 -10.59 -48.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189136926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.047 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds