Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 110.54240 * 2 1 4 4 O 1.42097 * 110.54630 * 223.25139 * 2 1 3 5 5 N 1.65600 * 104.45262 * 111.62227 * 2 1 3 6 6 C 1.47422 * 125.64440 * 90.02106 * 5 2 1 7 7 C 1.54912 * 104.82882 * 155.84023 * 6 5 2 8 8 C 1.55159 * 101.58259 * 37.01223 * 7 6 5 9 9 H 1.09001 * 110.71814 * 83.03853 * 8 7 6 10 10 C 1.53002 * 110.72050 * 206.13436 * 8 7 6 11 11 S 1.81402 * 109.47127 * 291.15947 * 10 8 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 8 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 8 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 8 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 C 1.53004 * 109.47094 * 165.27799 * 15 14 11 17 17 C 1.50701 * 109.47038 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00406 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00112 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99790 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00215 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47382 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47098 * 120.00653 * 21 19 17 24 24 H 1.48505 * 109.47180 * 240.00620 * 21 19 17 25 25 C 1.47313 * 125.61930 * 270.16926 * 5 2 1 26 26 H 1.09007 * 109.47131 * 308.37635 * 1 2 3 27 27 H 1.09001 * 109.47346 * 68.37401 * 1 2 3 28 28 H 1.09003 * 109.47059 * 188.37489 * 1 2 3 29 29 H 1.09001 * 110.37161 * 37.00622 * 6 5 2 30 30 H 1.09005 * 110.37158 * 274.67621 * 6 5 2 31 31 H 1.08996 * 111.00624 * 278.93475 * 7 6 5 32 32 H 1.09001 * 111.03863 * 155.10052 * 7 6 5 33 33 H 1.08990 * 109.47200 * 171.15366 * 10 8 7 34 34 H 1.09004 * 109.47018 * 51.15165 * 10 8 7 35 35 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 36 36 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 37 37 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 38 38 H 1.08994 * 109.46776 * 299.99858 * 16 15 14 39 39 H 1.09002 * 109.46826 * 60.00127 * 16 15 14 40 40 H 0.96996 * 120.00150 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.06474 * 61.74881 * 25 5 2 42 42 H 1.09004 * 109.85078 * 300.49336 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 2.4421 -2.0111 1.8226 7 6 3.3702 -1.9925 3.0627 8 6 2.8339 -0.7581 3.8348 9 1 1.9645 -1.0266 4.4350 10 6 3.9295 -0.1513 4.7136 11 16 4.3151 -1.2902 6.0719 12 8 4.9483 -2.4617 5.5760 13 8 3.2227 -1.3749 6.9768 14 7 5.4998 -0.5188 6.9342 15 6 5.2043 0.7423 7.6188 16 6 6.3189 1.0524 8.6201 17 6 6.0152 2.3499 9.3239 18 1 5.1169 2.8983 9.0817 19 6 6.8837 2.8364 10.2779 20 7 7.9774 2.1684 10.5733 21 14 6.5069 4.4443 11.1508 22 1 5.2254 4.9955 10.6417 23 1 6.3949 4.2003 12.6113 24 1 7.6007 5.4154 10.8936 25 6 2.4380 0.2159 2.7052 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.9276 -2.5253 0.9931 30 1 1.4943 -2.4917 2.0653 31 1 4.4103 -1.8488 2.7702 32 1 3.2545 -2.9023 3.6518 33 1 3.5832 0.7978 5.1224 34 1 4.8247 0.0160 4.1146 35 1 6.3906 -0.8997 6.9827 36 1 5.1397 1.5469 6.8863 37 1 4.2551 0.6550 8.1474 38 1 6.3835 0.2478 9.3525 39 1 7.2682 1.1397 8.0915 40 1 8.5886 2.5108 11.2441 41 1 1.5189 0.7382 2.9713 42 1 3.2400 0.9348 2.5374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189136926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = -180.116963 kcal Electronic energy + Delta-G solvation = -25631.341884 eV Core-core repulsion = 21671.266707 eV Total energy + Delta-G solvation = -3960.075178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.74157 -38.20822 -38.13111 -37.04179 -37.03393 -36.88173 -34.69729 -33.87463 -30.97348 -30.59199 -30.21948 -27.61525 -26.37887 -23.44751 -22.94506 -21.77828 -20.30636 -19.93981 -18.85310 -18.69748 -18.15927 -17.97640 -17.30738 -16.98567 -16.90271 -16.46772 -16.14012 -15.61002 -15.43254 -15.04819 -14.78137 -14.67145 -14.37956 -14.02328 -13.94233 -13.84570 -13.35733 -13.28471 -13.23915 -13.21757 -13.18534 -13.14031 -13.06946 -12.97143 -12.94710 -12.44826 -12.37336 -12.34428 -12.11424 -11.98101 -11.71035 -11.55008 -11.42060 -11.24446 -10.59621 -10.20246 -9.94451 -8.19325 -6.29954 -0.77230 -0.64741 1.44305 1.45503 1.57895 1.62615 1.82338 2.44262 2.81682 2.94746 3.03962 3.16023 3.25077 3.33868 3.54785 3.61087 4.04882 4.09770 4.17829 4.22524 4.32830 4.34331 4.43783 4.58035 4.62001 4.67570 4.85219 4.89529 4.92288 4.94476 5.00663 5.04271 5.13161 5.22343 5.38526 5.52933 5.66312 5.83736 6.06600 6.25394 6.87279 7.39747 8.93035 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002364 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.466450 B =11840.608950 C =12848.142446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.630 3.370 3 O -0.995 6.995 4 O -0.994 6.994 5 N -1.020 6.020 6 C 0.114 3.886 7 C -0.156 4.156 8 C -0.093 4.093 9 H 0.117 0.883 10 C -0.607 4.607 11 S 2.615 3.385 12 O -0.984 6.984 13 O -0.995 6.995 14 N -1.122 6.122 15 C 0.127 3.873 16 C 0.016 3.984 17 C -0.540 4.540 18 H 0.072 0.928 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.256 1.256 23 H -0.284 1.284 24 H -0.280 1.280 25 C 0.127 3.873 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.417 0.583 36 H 0.081 0.919 37 H 0.065 0.935 38 H -0.006 1.006 39 H 0.007 0.993 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -5.732 -21.625 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.729 3.271 3 O -0.986 6.986 4 O -0.984 6.984 5 N -0.858 5.858 6 C -0.010 4.010 7 C -0.195 4.195 8 C -0.115 4.115 9 H 0.135 0.865 10 C -0.740 4.740 11 S 2.712 3.288 12 O -0.975 6.975 13 O -0.985 6.985 14 N -0.881 5.881 15 C 0.001 3.999 16 C -0.022 4.022 17 C -0.579 4.579 18 H 0.090 0.910 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.210 1.210 24 H -0.206 1.206 25 C 0.001 3.999 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.168 0.832 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.251 0.749 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.013 0.987 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.593 -6.205 -22.060 28.891 hybrid contribution 0.500 0.955 0.844 1.369 sum -17.093 -5.250 -21.216 27.746 Atomic orbital electron populations 1.30354 1.22848 1.13748 1.13310 1.04084 0.79466 0.72234 0.71340 1.93565 1.79771 1.39384 1.85851 1.93556 1.79805 1.62608 1.62478 1.58562 1.85636 1.15750 1.25870 1.22177 1.00561 0.80736 0.97542 1.23270 1.00884 0.98236 0.97080 1.22084 0.97249 0.95991 0.96149 0.86467 1.30522 1.09681 1.17340 1.16466 1.04616 0.73107 0.75121 0.75974 1.93549 1.75363 1.46378 1.82201 1.93549 1.55866 1.86825 1.62259 1.55494 1.28030 1.37437 1.67114 1.21361 0.99473 0.83609 0.95411 1.19176 0.93885 0.95581 0.93576 1.21642 1.07667 1.07227 1.21370 0.90984 1.25970 0.94859 1.01238 0.97839 1.70103 1.12889 1.40743 1.33602 0.85384 0.78725 0.78898 0.77947 1.17993 1.20956 1.20612 1.21895 1.03033 0.92833 0.82177 0.83338 0.83772 0.83193 0.89758 0.88213 0.89865 0.88570 0.82011 0.82603 0.74933 0.90042 0.91653 0.98745 0.97416 0.92827 0.88088 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.12 10.99 113.37 1.25 -0.87 16 2 S 2.63 35.53 6.29 -56.49 -0.36 35.18 16 3 O -0.99 -21.49 17.60 -127.65 -2.25 -23.73 16 4 O -0.99 -20.78 17.28 -127.65 -2.21 -22.99 16 5 N -1.02 -12.81 3.63 -505.72 -1.83 -14.64 16 6 C 0.11 1.32 7.07 86.86 0.61 1.94 16 7 C -0.16 -2.29 5.52 31.99 0.18 -2.12 16 8 C -0.09 -1.28 2.94 -9.61 -0.03 -1.31 16 9 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 10 C -0.61 -9.72 5.40 71.98 0.39 -9.33 16 11 S 2.62 67.86 5.28 -56.49 -0.30 67.56 16 12 O -0.98 -29.29 16.96 -127.65 -2.16 -31.46 16 13 O -0.99 -32.84 17.51 -127.65 -2.23 -35.08 16 14 N -1.12 -34.42 5.89 -187.48 -1.10 -35.53 16 15 C 0.13 4.60 6.06 86.38 0.52 5.12 16 16 C 0.02 0.80 5.12 29.85 0.15 0.96 16 17 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 21 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.13 1.55 6.52 86.67 0.56 2.12 16 26 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 30 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 1.34 7.98 -2.39 -0.02 1.32 16 32 H 0.10 1.40 7.81 -2.39 -0.02 1.38 16 33 H 0.16 1.99 8.14 -2.40 -0.02 1.98 16 34 H 0.16 2.05 8.06 -2.39 -0.02 2.04 16 35 H 0.42 12.63 8.62 -96.74 -0.83 11.79 16 36 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 38 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.04 7.82 -2.38 -0.02 1.02 16 Total: -1.00 -84.47 371.89 -5.61 -90.08 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.19 Total: 12.48 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 4.33 Total: -31.59 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -2.65 Total: -104.95 kcal Atomic # 8 Polarization: -104.40 SS G_CDS: -8.85 Total: -113.26 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 103.39 SS G_CDS: -0.65 Total: 102.74 kcal Total: -84.47 -5.61 -90.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189136926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.036 kcal (2) G-P(sol) polarization free energy of solvation -84.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds