Wall clock time and date at job start Sat Apr 11 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42102 * 108.57886 * 2 1 4 4 O 1.42095 * 108.57760 * 228.97420 * 2 1 3 5 5 C 1.81405 * 101.91660 * 114.48676 * 2 1 3 6 6 C 1.53005 * 109.46622 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.46807 * 179.97438 * 6 5 2 8 8 N 1.46897 * 109.47325 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00464 * 169.99829 * 8 7 6 10 10 C 1.53235 * 109.34035 * 187.25440 * 9 8 7 11 11 N 1.47080 * 108.52395 * 306.16994 * 10 9 8 12 12 S 1.65600 * 120.88374 * 231.18650 * 11 10 9 13 13 O 1.42103 * 106.39991 * 336.46281 * 12 11 10 14 14 O 1.42095 * 106.40377 * 203.54065 * 12 11 10 15 15 C 1.76199 * 107.21522 * 89.99886 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47079 * 118.23339 * 51.46137 * 11 10 9 24 24 C 1.46895 * 110.99997 * 294.30687 * 8 7 6 25 25 H 1.09001 * 109.47438 * 305.51413 * 1 2 3 26 26 H 1.09004 * 109.46788 * 65.51392 * 1 2 3 27 27 H 1.09004 * 109.47573 * 185.51011 * 1 2 3 28 28 H 1.09002 * 109.47073 * 60.00288 * 5 2 1 29 29 H 1.08997 * 109.47333 * 299.99724 * 5 2 1 30 30 H 1.09002 * 109.47107 * 60.00376 * 6 5 2 31 31 H 1.08997 * 109.47095 * 299.99936 * 6 5 2 32 32 H 1.09000 * 109.47416 * 60.00003 * 7 6 5 33 33 H 1.08997 * 109.47244 * 299.99849 * 7 6 5 34 34 H 1.09005 * 109.48780 * 67.29846 * 9 8 7 35 35 H 1.09002 * 109.49387 * 307.21982 * 9 8 7 36 36 H 1.09004 * 109.62673 * 186.46266 * 10 9 8 37 37 H 1.09000 * 109.63288 * 65.88596 * 10 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.63392 * 68.25192 * 23 11 10 40 40 H 1.09007 * 109.62749 * 188.83308 * 23 11 10 41 41 H 1.09006 * 109.49494 * 292.69720 * 24 8 7 42 42 H 1.08997 * 109.49707 * 52.78067 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 6 3.7054 -0.8196 1.7980 7 6 4.0213 -1.4395 3.1606 8 7 5.4776 -1.5207 3.3359 9 6 5.8222 -1.8869 4.7161 10 6 7.3394 -1.7844 4.9045 11 7 7.9951 -2.5918 3.8647 12 16 9.1476 -3.7134 4.2600 13 8 9.6847 -3.3123 5.5129 14 8 9.9428 -3.8987 3.0970 15 6 8.3145 -5.2402 4.5416 16 1 7.2407 -5.2963 4.4402 17 6 9.0341 -6.3650 4.8855 18 7 10.3417 -6.2968 5.0087 19 14 8.1517 -7.9854 5.1766 20 1 7.4301 -8.3849 3.9417 21 1 9.1434 -9.0323 5.5315 22 1 7.1801 -7.8273 6.2885 23 6 7.6044 -2.3724 2.4638 24 6 6.0725 -2.4559 2.3719 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.7609 -1.7370 1.6665 29 1 1.7609 -0.1171 2.4043 30 1 4.1335 0.1815 1.7466 31 1 4.1327 -1.4384 1.0090 32 1 3.5932 -2.4405 3.2125 33 1 3.5941 -0.8203 3.9493 34 1 5.4996 -2.9095 4.9123 35 1 5.3230 -1.2085 5.4079 36 1 7.6126 -2.1638 5.8892 37 1 7.6506 -0.7440 4.8108 38 1 10.8479 -7.0880 5.2509 39 1 7.9405 -1.3875 2.1399 40 1 8.0528 -3.1408 1.8339 41 1 5.7465 -3.4706 2.6008 42 1 5.7548 -2.1902 1.3637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:10 Heat of formation + Delta-G solvation = -149.844982 kcal Electronic energy + Delta-G solvation = -26107.313466 eV Core-core repulsion = 22148.550980 eV Total energy + Delta-G solvation = -3958.762486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -38.83678 -37.31335 -36.37409 -35.45801 -35.28602 -33.95190 -33.14556 -32.72651 -30.76011 -30.09266 -27.53517 -26.13333 -24.55844 -23.49191 -21.50434 -20.25393 -19.21871 -18.51664 -17.58490 -16.99830 -16.65219 -16.45266 -16.23971 -15.54874 -15.17797 -14.95843 -14.77663 -14.70511 -14.29446 -14.15567 -13.77937 -13.67624 -13.44308 -13.29696 -12.82013 -12.48047 -12.40052 -12.32529 -12.30775 -12.00564 -11.81890 -11.53198 -11.43623 -11.31609 -11.22565 -11.04622 -11.00308 -10.83176 -10.65251 -10.61562 -10.28526 -10.09244 -9.97431 -9.25329 -8.95694 -8.44930 -8.03768 -6.70380 -5.32803 -0.42171 2.26194 2.35439 3.05695 3.10653 3.15515 3.22435 3.59974 3.81962 4.03859 4.23537 4.32058 4.41280 4.53245 4.56291 4.63009 4.73867 4.97585 5.14335 5.18695 5.23325 5.30096 5.40490 5.53463 5.61454 5.66826 5.72784 5.78682 5.82864 5.92724 6.03138 6.09617 6.25097 6.43065 6.44335 6.73800 7.13211 7.15698 7.31596 7.58050 7.95180 8.87750 10.23119 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002601 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.699388 B =10763.979441 C =11309.944246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.422 3.578 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.608 4.608 6 C -0.112 4.112 7 C 0.064 3.936 8 N -0.537 5.537 9 C 0.043 3.957 10 C 0.133 3.867 11 N -1.015 6.015 12 S 2.716 3.284 13 O -1.004 7.004 14 O -1.003 7.003 15 C -1.020 5.020 16 H 0.098 0.902 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.919 3.081 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.265 1.265 23 C 0.132 3.868 24 C 0.035 3.965 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.291 0.709 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 10.281 -5.195 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.604 3.396 3 O -0.935 6.935 4 O -0.935 6.935 5 C -0.738 4.738 6 C -0.150 4.150 7 C -0.066 4.066 8 N -0.262 5.262 9 C -0.087 4.087 10 C 0.006 3.994 11 N -0.850 5.850 12 S 2.817 3.183 13 O -0.994 6.994 14 O -0.994 6.994 15 C -1.153 5.153 16 H 0.117 0.883 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.743 3.257 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.190 1.190 23 C 0.006 3.994 24 C -0.095 4.095 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.650 11.171 -5.860 23.350 hybrid contribution -2.144 -2.383 1.018 3.363 sum -21.794 8.788 -4.842 23.993 Atomic orbital electron populations 1.30303 1.27287 1.11479 1.11718 1.07829 0.78083 0.75872 0.77813 1.93612 1.78848 1.34527 1.86542 1.93617 1.78834 1.66991 1.54042 1.30309 1.06568 1.13891 1.22994 1.21366 0.89644 1.04169 0.99857 1.22013 0.88761 0.99389 0.96408 1.61869 1.09012 1.50601 1.04725 1.22507 0.97534 0.99668 0.88956 1.21262 0.90323 0.96051 0.91750 1.58289 1.59963 1.55304 1.11446 1.00495 0.71919 0.73285 0.72610 1.93351 1.77332 1.84009 1.44727 1.93353 1.67415 1.86740 1.51847 1.30593 1.05986 1.15829 1.62866 0.88332 1.24740 0.94227 1.00325 0.89169 1.69890 1.06212 1.32849 1.38536 0.86229 0.79789 0.80097 0.79585 1.18925 1.20090 1.18974 1.21367 0.92763 1.02309 0.82997 1.22711 0.96202 0.94433 0.96119 0.85414 0.85332 0.85406 0.85034 0.84892 0.89089 0.89883 0.94525 0.90475 0.93915 0.90260 0.88880 0.91677 0.89829 0.91584 0.88816 0.93760 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.69 10.62 101.05 1.07 -0.62 16 2 S 2.42 14.96 5.36 -107.50 -0.58 14.39 16 3 O -0.94 -9.64 18.10 -57.83 -1.05 -10.68 16 4 O -0.94 -9.85 18.10 -57.83 -1.05 -10.90 16 5 C -0.61 -2.87 5.81 37.16 0.22 -2.66 16 6 C -0.11 -0.95 5.15 -26.73 -0.14 -1.08 16 7 C 0.06 0.62 4.96 -3.83 -0.02 0.60 16 8 N -0.54 -7.00 4.63 -234.03 -1.08 -8.08 16 9 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 10 C 0.13 2.25 6.53 -3.60 -0.02 2.23 16 11 N -1.01 -20.53 3.32 -112.97 -0.38 -20.91 16 12 S 2.72 71.80 4.98 -107.50 -0.54 71.26 16 13 O -1.00 -29.06 16.80 -57.17 -0.96 -30.02 16 14 O -1.00 -29.16 16.79 -57.17 -0.96 -30.12 16 15 C -1.02 -27.72 9.75 30.60 0.30 -27.42 16 16 H 0.10 2.46 7.81 -52.49 -0.41 2.05 16 17 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 18 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 19 Si 0.92 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C 0.13 2.29 6.56 -3.36 -0.02 2.27 16 24 C 0.03 0.49 5.48 -3.46 -0.02 0.47 16 25 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 26 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.13 0.13 8.14 -51.92 -0.42 -0.30 16 28 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.75 6.40 -51.93 -0.33 0.42 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.88 7.99 -51.93 -0.41 0.47 16 36 H 0.09 1.66 7.22 -51.93 -0.37 1.28 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.71 7.21 -51.92 -0.37 1.33 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.98 6.16 -51.93 -0.32 0.66 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -40.88 366.67 -10.52 -51.40 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.42 Total: -1.17 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 1.25 Total: -22.04 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.73 Total: -53.06 kcal Atomic # 8 Polarization: -77.70 SS G_CDS: -4.01 Total: -81.72 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 86.76 SS G_CDS: -1.11 Total: 85.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.88 -10.52 -51.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.443 kcal (2) G-P(sol) polarization free energy of solvation -40.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds