Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42102 * 108.57886 * 2 1 4 4 O 1.42095 * 108.57760 * 228.97420 * 2 1 3 5 5 C 1.81405 * 101.91660 * 114.48676 * 2 1 3 6 6 C 1.53005 * 109.46622 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.46807 * 179.97438 * 6 5 2 8 8 N 1.46897 * 109.47325 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00464 * 169.99829 * 8 7 6 10 10 C 1.53235 * 109.34035 * 187.25440 * 9 8 7 11 11 N 1.47080 * 108.52395 * 306.16994 * 10 9 8 12 12 S 1.65600 * 120.88374 * 231.18650 * 11 10 9 13 13 O 1.42103 * 106.39991 * 336.46281 * 12 11 10 14 14 O 1.42095 * 106.40377 * 203.54065 * 12 11 10 15 15 C 1.76199 * 107.21522 * 89.99886 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47079 * 118.23339 * 51.46137 * 11 10 9 24 24 C 1.46895 * 110.99997 * 294.30687 * 8 7 6 25 25 H 1.09001 * 109.47438 * 305.51413 * 1 2 3 26 26 H 1.09004 * 109.46788 * 65.51392 * 1 2 3 27 27 H 1.09004 * 109.47573 * 185.51011 * 1 2 3 28 28 H 1.09002 * 109.47073 * 60.00288 * 5 2 1 29 29 H 1.08997 * 109.47333 * 299.99724 * 5 2 1 30 30 H 1.09002 * 109.47107 * 60.00376 * 6 5 2 31 31 H 1.08997 * 109.47095 * 299.99936 * 6 5 2 32 32 H 1.09000 * 109.47416 * 60.00003 * 7 6 5 33 33 H 1.08997 * 109.47244 * 299.99849 * 7 6 5 34 34 H 1.09005 * 109.48780 * 67.29846 * 9 8 7 35 35 H 1.09002 * 109.49387 * 307.21982 * 9 8 7 36 36 H 1.09004 * 109.62673 * 186.46266 * 10 9 8 37 37 H 1.09000 * 109.63288 * 65.88596 * 10 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.63392 * 68.25192 * 23 11 10 40 40 H 1.09007 * 109.62749 * 188.83308 * 23 11 10 41 41 H 1.09006 * 109.49494 * 292.69720 * 24 8 7 42 42 H 1.08997 * 109.49707 * 52.78067 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 6 3.7054 -0.8196 1.7980 7 6 4.0213 -1.4395 3.1606 8 7 5.4776 -1.5207 3.3359 9 6 5.8222 -1.8869 4.7161 10 6 7.3394 -1.7844 4.9045 11 7 7.9951 -2.5918 3.8647 12 16 9.1476 -3.7134 4.2600 13 8 9.6847 -3.3123 5.5129 14 8 9.9428 -3.8987 3.0970 15 6 8.3145 -5.2402 4.5416 16 1 7.2407 -5.2963 4.4402 17 6 9.0341 -6.3650 4.8855 18 7 10.3417 -6.2968 5.0087 19 14 8.1517 -7.9854 5.1766 20 1 7.4301 -8.3849 3.9417 21 1 9.1434 -9.0323 5.5315 22 1 7.1801 -7.8273 6.2885 23 6 7.6044 -2.3724 2.4638 24 6 6.0725 -2.4559 2.3719 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.7609 -1.7370 1.6665 29 1 1.7609 -0.1171 2.4043 30 1 4.1335 0.1815 1.7466 31 1 4.1327 -1.4384 1.0090 32 1 3.5932 -2.4405 3.2125 33 1 3.5941 -0.8203 3.9493 34 1 5.4996 -2.9095 4.9123 35 1 5.3230 -1.2085 5.4079 36 1 7.6126 -2.1638 5.8892 37 1 7.6506 -0.7440 4.8108 38 1 10.8479 -7.0880 5.2509 39 1 7.9405 -1.3875 2.1399 40 1 8.0528 -3.1408 1.8339 41 1 5.7465 -3.4706 2.6008 42 1 5.7548 -2.1902 1.3637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -186.647925 kcal Electronic energy + Delta-G solvation = -26108.909361 eV Core-core repulsion = 22148.550980 eV Total energy + Delta-G solvation = -3960.358381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96320 -37.91407 -37.47394 -36.98279 -36.48684 -36.14218 -35.18587 -33.71491 -32.02052 -30.34206 -28.47471 -28.26680 -25.54487 -24.73528 -22.34046 -21.61693 -20.40164 -19.71757 -19.24410 -18.36359 -17.54826 -17.16767 -17.09299 -16.90471 -16.68862 -16.23685 -16.07632 -15.79947 -15.61761 -15.36352 -15.21800 -14.69587 -14.03790 -13.98190 -13.85123 -13.63450 -13.48963 -13.25770 -13.12544 -13.05150 -13.01712 -12.95279 -12.87336 -12.74039 -12.53359 -12.49065 -12.34943 -12.20563 -12.13082 -11.88209 -11.68430 -11.51888 -11.25326 -11.18233 -10.94846 -9.90677 -9.22393 -8.75170 -7.49599 -0.83875 0.29072 1.31513 1.33671 1.46726 1.98766 2.18474 2.56548 2.68243 2.83042 3.02708 3.21129 3.78446 3.80137 3.86624 3.95981 4.02805 4.04252 4.16838 4.26505 4.30118 4.35227 4.42621 4.50984 4.56165 4.59331 4.66286 4.77737 4.84940 4.87056 4.95657 5.03998 5.06478 5.13495 5.15476 5.21876 5.32436 5.88076 5.94520 6.05998 6.18270 6.76446 8.19670 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.002601 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.699388 B =10763.979441 C =11309.944246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.417 3.583 3 O -0.991 6.991 4 O -0.994 6.994 5 C -0.593 4.593 6 C -0.121 4.121 7 C 0.062 3.938 8 N -0.543 5.543 9 C 0.050 3.950 10 C 0.122 3.878 11 N -1.011 6.011 12 S 2.717 3.283 13 O -1.040 7.040 14 O -1.042 7.042 15 C -1.035 5.035 16 H 0.115 0.885 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.989 3.011 20 H -0.251 1.251 21 H -0.264 1.264 22 H -0.249 1.249 23 C 0.123 3.877 24 C 0.041 3.959 25 H 0.155 0.845 26 H 0.131 0.869 27 H 0.152 0.848 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.034 0.966 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.299 0.701 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.813 10.019 -4.450 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.606 3.394 3 O -0.988 6.988 4 O -0.991 6.991 5 C -0.724 4.724 6 C -0.160 4.160 7 C -0.066 4.066 8 N -0.268 5.268 9 C -0.080 4.080 10 C -0.003 4.003 11 N -0.850 5.850 12 S 2.820 3.180 13 O -1.030 7.030 14 O -1.032 7.032 15 C -1.169 5.169 16 H 0.133 0.867 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.807 3.193 20 H -0.175 1.175 21 H -0.188 1.188 22 H -0.173 1.173 23 C -0.003 4.003 24 C -0.088 4.088 25 H 0.173 0.827 26 H 0.150 0.850 27 H 0.171 0.829 28 H 0.177 0.823 29 H 0.184 0.816 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.880 10.946 -5.140 26.767 hybrid contribution -0.891 -2.184 0.790 2.487 sum -24.771 8.762 -4.350 26.632 Atomic orbital electron populations 1.30084 1.21816 1.13822 1.13236 1.07531 0.79923 0.74169 0.77791 1.93546 1.81073 1.36832 1.87360 1.93548 1.81117 1.67703 1.56711 1.30162 1.04153 1.16001 1.22126 1.21392 0.92387 1.03325 0.98910 1.22153 0.86314 1.00404 0.97720 1.61857 1.11482 1.49685 1.03764 1.22453 0.94915 1.00248 0.90361 1.21557 0.92750 0.95937 0.90099 1.57788 1.59247 1.54519 1.13461 1.00052 0.72580 0.73966 0.71436 1.93290 1.78910 1.84656 1.46183 1.93290 1.69526 1.87587 1.52820 1.30895 1.06910 1.16366 1.62682 0.86656 1.26026 0.94955 1.04941 0.88378 1.69993 1.08207 1.34511 1.39927 0.85177 0.78922 0.74757 0.80411 1.17484 1.18841 1.17260 1.21608 0.95353 1.02351 0.80972 1.22613 0.93672 0.94560 0.97980 0.82680 0.84998 0.82944 0.82312 0.81554 0.90011 0.91125 0.93777 0.88108 0.94792 0.86701 0.90320 0.90249 0.89116 0.90287 0.90558 0.94632 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.81 10.62 113.37 1.20 0.39 16 2 S 2.42 26.29 5.36 -56.49 -0.30 25.99 16 3 O -0.99 -20.12 18.10 -127.37 -2.31 -22.43 16 4 O -0.99 -20.84 18.10 -127.37 -2.30 -23.15 16 5 C -0.59 -3.43 5.81 71.98 0.42 -3.01 16 6 C -0.12 -1.76 5.15 30.60 0.16 -1.60 16 7 C 0.06 0.99 4.96 86.30 0.43 1.42 16 8 N -0.54 -12.84 4.63 -894.33 -4.14 -16.98 16 9 C 0.05 1.25 5.62 86.38 0.49 1.74 16 10 C 0.12 4.09 6.53 86.35 0.56 4.65 16 11 N -1.01 -41.58 3.32 -511.33 -1.70 -43.28 16 12 S 2.72 148.89 4.98 -56.49 -0.28 148.61 16 13 O -1.04 -62.72 16.80 -128.00 -2.15 -64.87 16 14 O -1.04 -63.42 16.79 -128.00 -2.15 -65.56 16 15 C -1.04 -57.04 9.75 67.74 0.66 -56.38 16 16 H 0.12 5.73 7.81 -2.91 -0.02 5.71 16 17 C 0.07 3.89 5.46 84.66 0.46 4.35 16 18 N -0.89 -53.88 13.19 21.45 0.28 -53.59 16 19 Si 0.99 41.11 29.54 68.60 2.03 43.13 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 23 C 0.12 4.30 6.56 86.50 0.57 4.86 16 24 C 0.04 1.13 5.48 86.54 0.47 1.61 16 25 H 0.15 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.18 6.40 -2.39 -0.02 1.17 16 32 H 0.04 0.66 8.12 -2.39 -0.02 0.65 16 33 H 0.10 1.15 7.97 -2.39 -0.02 1.14 16 34 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.11 2.11 7.99 -2.39 -0.02 2.09 16 36 H 0.08 2.84 7.22 -2.38 -0.02 2.82 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.30 16.18 8.31 -92.70 -0.77 15.41 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 2.90 7.21 -2.38 -0.02 2.89 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.10 2.39 6.16 -2.39 -0.01 2.38 16 Total: -1.00 -93.67 366.67 -6.59 -100.26 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.01 Total: 13.85 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 5.42 Total: -41.97 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.56 Total: -113.85 kcal Atomic # 8 Polarization: -167.10 SS G_CDS: -8.91 Total: -176.01 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 175.18 SS G_CDS: -0.58 Total: 174.59 kcal Total: -93.67 -6.59 -100.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.392 kcal (2) G-P(sol) polarization free energy of solvation -93.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds