Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 110.54453 * 2 1 4 4 O 1.42097 * 110.54329 * 223.25251 * 2 1 3 5 5 N 1.65596 * 104.45102 * 111.62160 * 2 1 3 6 6 C 1.47585 * 134.48952 * 89.99932 * 5 2 1 7 7 C 1.53947 * 86.11441 * 155.36113 * 6 5 2 8 8 C 1.53006 * 113.73862 * 137.95352 * 7 6 5 9 9 S 1.81401 * 109.46938 * 174.99717 * 8 7 6 10 10 O 1.42100 * 110.54259 * 291.62646 * 9 8 7 11 11 O 1.42103 * 110.53917 * 68.37413 * 9 8 7 12 12 N 1.65596 * 104.45046 * 179.97438 * 9 8 7 13 13 C 1.46500 * 119.99986 * 65.00024 * 12 9 8 14 14 C 1.53001 * 109.47284 * 164.99905 * 13 12 9 15 15 C 1.53004 * 109.47065 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46764 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00591 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99863 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99832 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47002 * 59.99848 * 20 18 16 22 22 H 1.48494 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46914 * 300.00202 * 20 18 16 24 24 C 1.47577 * 134.49764 * 269.99991 * 5 2 1 25 25 H 1.09007 * 109.47153 * 308.37826 * 1 2 3 26 26 H 1.09005 * 109.47221 * 68.37158 * 1 2 3 27 27 H 1.09002 * 109.47245 * 188.37896 * 1 2 3 28 28 H 1.09000 * 113.77328 * 41.06062 * 6 5 2 29 29 H 1.09001 * 113.76777 * 269.66459 * 6 5 2 30 30 H 1.08995 * 113.74302 * 269.15000 * 7 6 5 31 31 H 1.08995 * 109.46794 * 294.99903 * 8 7 6 32 32 H 1.09000 * 109.47314 * 55.00037 * 8 7 6 33 33 H 0.96998 * 120.00509 * 245.00179 * 12 9 8 34 34 H 1.09006 * 109.47221 * 285.00140 * 13 12 9 35 35 H 1.09003 * 109.46691 * 44.99878 * 13 12 9 36 36 H 1.08996 * 109.47256 * 300.00193 * 14 13 12 37 37 H 1.08999 * 109.46802 * 60.00224 * 14 13 12 38 38 H 1.08996 * 109.47227 * 300.00194 * 15 14 13 39 39 H 1.09003 * 109.46814 * 60.00031 * 15 14 13 40 40 H 0.96997 * 119.99809 * 179.97438 * 19 18 16 41 41 H 1.09003 * 113.76916 * 90.33352 * 24 5 2 42 42 H 1.09004 * 113.76688 * 318.94515 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2272 -0.5909 1.4907 6 6 2.4853 -1.9387 2.0338 7 6 3.3357 -1.2304 3.1040 8 6 3.1412 -1.7897 4.5148 9 16 4.2983 -0.9779 5.6518 10 8 5.6350 -1.3631 5.3622 11 8 3.9509 0.3892 5.8247 12 7 3.9836 -1.6679 7.1240 13 6 4.2475 -3.0932 7.3363 14 6 4.2356 -3.3962 8.8359 15 6 4.5119 -4.8847 9.0577 16 6 4.5008 -5.1830 10.5348 17 1 4.3148 -4.3904 11.2444 18 6 4.7270 -6.4680 10.9803 19 7 4.9529 -7.4333 10.1161 20 14 4.7125 -6.8380 12.8112 21 1 3.3834 -6.4913 13.3758 22 1 4.9807 -8.2826 13.0265 23 1 5.7623 -6.0340 13.4870 24 6 2.4854 0.0186 2.8097 25 1 -0.3634 0.6381 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3634 -1.0167 0.1498 28 1 3.0627 -2.5782 1.3663 29 1 1.5972 -2.4293 2.4322 30 1 4.3853 -1.1233 2.8303 31 1 2.1186 -1.6025 4.8420 32 1 3.3302 -2.8632 4.5094 33 1 3.6245 -1.1284 7.8457 34 1 3.4769 -3.6833 6.8402 35 1 5.2231 -3.3476 6.9219 36 1 5.0062 -2.8062 9.3320 37 1 3.2601 -3.1417 9.2502 38 1 3.7416 -5.4750 8.5616 39 1 5.4876 -5.1387 8.6434 40 1 5.1124 -8.3373 10.4295 41 1 1.5972 0.1031 3.4361 42 1 3.0628 0.9419 2.7616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209406200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = -117.628286 kcal Electronic energy + Delta-G solvation = -25039.399687 eV Core-core repulsion = 21082.034222 eV Total energy + Delta-G solvation = -3957.365465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93063 -37.51546 -37.16093 -36.37568 -36.10493 -35.91122 -33.28300 -32.03213 -30.90785 -29.99214 -26.80215 -26.53748 -26.41159 -23.05445 -21.21851 -20.55868 -19.37099 -19.16931 -18.09706 -17.53447 -17.15481 -16.71650 -16.63688 -16.42085 -15.97652 -15.52810 -14.81491 -14.62150 -14.55517 -14.42824 -14.22736 -13.81886 -13.68760 -13.35833 -13.06774 -12.61683 -12.54088 -12.46415 -12.39029 -12.37127 -12.21151 -12.12970 -11.99335 -11.96166 -11.59087 -11.54565 -11.27572 -10.95057 -10.80882 -10.70056 -10.59392 -9.96032 -9.64678 -9.50381 -9.29141 -9.14572 -8.40795 -6.06166 -4.08899 -0.26969 0.16582 2.01330 2.70566 3.29753 3.34690 3.36858 3.40651 3.46227 3.63106 3.75073 3.90404 4.12952 4.19077 4.30035 4.30869 4.41195 4.56057 4.87408 4.92031 4.99269 5.10319 5.12457 5.19161 5.26519 5.29944 5.35354 5.56724 5.62639 5.84693 5.86663 6.02445 6.51138 6.70587 6.90660 7.09915 7.57655 7.70381 7.92379 8.34191 8.97462 9.55568 11.05041 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.001935 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.986486 B =14464.046001 C =15022.230391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.628 3.372 3 O -0.950 6.950 4 O -0.950 6.950 5 N -1.039 6.039 6 C 0.139 3.861 7 C -0.113 4.113 8 C -0.630 4.630 9 S 2.609 3.391 10 O -0.952 6.952 11 O -0.961 6.961 12 N -1.117 6.117 13 C 0.109 3.891 14 C -0.116 4.116 15 C 0.021 3.979 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.121 3.879 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.095 0.905 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 13.788 -19.052 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.826 4.826 2 S 2.722 3.278 3 O -0.940 6.940 4 O -0.941 6.941 5 N -0.877 5.877 6 C 0.013 3.987 7 C -0.135 4.135 8 C -0.759 4.759 9 S 2.701 3.299 10 O -0.942 6.942 11 O -0.952 6.952 12 N -0.877 5.877 13 C -0.016 4.016 14 C -0.155 4.155 15 C -0.017 4.017 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.004 4.004 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.070 14.498 -20.311 26.910 hybrid contribution -1.601 -0.793 1.497 2.331 sum -11.671 13.705 -18.813 26.038 Atomic orbital electron populations 1.30630 1.29103 1.11490 1.11393 1.04443 0.77300 0.73889 0.72126 1.93622 1.77601 1.37474 1.85336 1.93617 1.77637 1.61934 1.60922 1.60311 1.84889 1.18080 1.24423 1.22826 0.98392 0.84508 0.93010 1.22925 1.01842 0.96966 0.91753 1.30686 1.19300 1.15347 1.10570 1.04971 0.75972 0.74280 0.74711 1.93626 1.32197 1.83864 1.84489 1.93594 1.85323 1.31511 1.84725 1.55572 1.82765 1.20251 1.29123 1.21625 1.00901 0.77866 1.01204 1.21844 1.01272 1.01398 0.91017 1.19079 0.97334 0.88244 0.97012 1.21172 1.48784 0.93970 0.92203 0.92664 1.25025 0.95249 0.96441 0.97740 1.69944 1.48544 1.01061 1.33832 0.86636 0.78546 0.77174 0.85505 1.20273 1.21297 1.20216 1.23078 0.98869 0.97501 0.80994 0.85426 0.85458 0.85458 0.88634 0.88966 0.86351 0.84287 0.83737 0.74885 0.92174 0.90448 0.92359 0.92603 0.96337 0.96155 0.92866 0.88722 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.38 10.99 101.05 1.11 -1.27 16 2 S 2.63 19.25 6.57 -107.50 -0.71 18.54 16 3 O -0.95 -10.43 18.02 -57.54 -1.04 -11.47 16 4 O -0.95 -10.22 18.02 -57.54 -1.04 -11.26 16 5 N -1.04 -6.91 3.99 -118.75 -0.47 -7.38 16 6 C 0.14 0.76 8.48 -2.97 -0.03 0.74 16 7 C -0.11 -0.75 3.84 -89.69 -0.34 -1.10 16 8 C -0.63 -3.95 5.93 37.16 0.22 -3.73 16 9 S 2.61 28.02 5.45 -107.50 -0.59 27.43 16 10 O -0.95 -14.08 17.50 -57.54 -1.01 -15.08 16 11 O -0.96 -12.28 18.08 -57.54 -1.04 -13.32 16 12 N -1.12 -12.77 5.89 -10.61 -0.06 -12.83 16 13 C 0.11 1.53 6.13 -4.04 -0.02 1.51 16 14 C -0.12 -2.10 5.30 -26.73 -0.14 -2.24 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 17 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 0.78 8.47 -2.98 -0.03 0.75 16 25 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.12 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.14 0.52 7.84 -51.93 -0.41 0.11 16 32 H 0.14 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.42 4.29 8.62 -34.47 -0.30 4.00 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.15 7.70 -51.93 -0.40 0.75 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.09 0.37 7.89 -51.93 -0.41 -0.04 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -39.37 380.22 -10.83 -50.20 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.55 Total: -3.44 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 0.22 Total: -17.91 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.20 Total: -45.41 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -4.12 Total: -51.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -1.29 Total: 45.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.37 -10.83 -50.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209406200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.428 kcal (2) G-P(sol) polarization free energy of solvation -39.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds