Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 110.54453 * 2 1 4 4 O 1.42097 * 110.54329 * 223.25251 * 2 1 3 5 5 N 1.65596 * 104.45102 * 111.62160 * 2 1 3 6 6 C 1.47585 * 134.48952 * 89.99932 * 5 2 1 7 7 C 1.53947 * 86.11441 * 155.36113 * 6 5 2 8 8 C 1.53006 * 113.73862 * 137.95352 * 7 6 5 9 9 S 1.81401 * 109.46938 * 174.99717 * 8 7 6 10 10 O 1.42100 * 110.54259 * 291.62646 * 9 8 7 11 11 O 1.42103 * 110.53917 * 68.37413 * 9 8 7 12 12 N 1.65596 * 104.45046 * 179.97438 * 9 8 7 13 13 C 1.46500 * 119.99986 * 65.00024 * 12 9 8 14 14 C 1.53001 * 109.47284 * 164.99905 * 13 12 9 15 15 C 1.53004 * 109.47065 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46764 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00591 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99863 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99832 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47002 * 59.99848 * 20 18 16 22 22 H 1.48494 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46914 * 300.00202 * 20 18 16 24 24 C 1.47577 * 134.49764 * 269.99991 * 5 2 1 25 25 H 1.09007 * 109.47153 * 308.37826 * 1 2 3 26 26 H 1.09005 * 109.47221 * 68.37158 * 1 2 3 27 27 H 1.09002 * 109.47245 * 188.37896 * 1 2 3 28 28 H 1.09000 * 113.77328 * 41.06062 * 6 5 2 29 29 H 1.09001 * 113.76777 * 269.66459 * 6 5 2 30 30 H 1.08995 * 113.74302 * 269.15000 * 7 6 5 31 31 H 1.08995 * 109.46794 * 294.99903 * 8 7 6 32 32 H 1.09000 * 109.47314 * 55.00037 * 8 7 6 33 33 H 0.96998 * 120.00509 * 245.00179 * 12 9 8 34 34 H 1.09006 * 109.47221 * 285.00140 * 13 12 9 35 35 H 1.09003 * 109.46691 * 44.99878 * 13 12 9 36 36 H 1.08996 * 109.47256 * 300.00193 * 14 13 12 37 37 H 1.08999 * 109.46802 * 60.00224 * 14 13 12 38 38 H 1.08996 * 109.47227 * 300.00194 * 15 14 13 39 39 H 1.09003 * 109.46814 * 60.00031 * 15 14 13 40 40 H 0.96997 * 119.99809 * 179.97438 * 19 18 16 41 41 H 1.09003 * 113.76916 * 90.33352 * 24 5 2 42 42 H 1.09004 * 113.76688 * 318.94515 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2272 -0.5909 1.4907 6 6 2.4853 -1.9387 2.0338 7 6 3.3357 -1.2304 3.1040 8 6 3.1412 -1.7897 4.5148 9 16 4.2983 -0.9779 5.6518 10 8 5.6350 -1.3631 5.3622 11 8 3.9509 0.3892 5.8247 12 7 3.9836 -1.6679 7.1240 13 6 4.2475 -3.0932 7.3363 14 6 4.2356 -3.3962 8.8359 15 6 4.5119 -4.8847 9.0577 16 6 4.5008 -5.1830 10.5348 17 1 4.3148 -4.3904 11.2444 18 6 4.7270 -6.4680 10.9803 19 7 4.9529 -7.4333 10.1161 20 14 4.7125 -6.8380 12.8112 21 1 3.3834 -6.4913 13.3758 22 1 4.9807 -8.2826 13.0265 23 1 5.7623 -6.0340 13.4870 24 6 2.4854 0.0186 2.8097 25 1 -0.3634 0.6381 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3634 -1.0167 0.1498 28 1 3.0627 -2.5782 1.3663 29 1 1.5972 -2.4293 2.4322 30 1 4.3853 -1.1233 2.8303 31 1 2.1186 -1.6025 4.8420 32 1 3.3302 -2.8632 4.5094 33 1 3.6245 -1.1284 7.8457 34 1 3.4769 -3.6833 6.8402 35 1 5.2231 -3.3476 6.9219 36 1 5.0062 -2.8062 9.3320 37 1 3.2601 -3.1417 9.2502 38 1 3.7416 -5.4750 8.5616 39 1 5.4876 -5.1387 8.6434 40 1 5.1124 -8.3373 10.4295 41 1 1.5972 0.1031 3.4361 42 1 3.0628 0.9419 2.7616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209406200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -151.648054 kcal Electronic energy + Delta-G solvation = -25040.874895 eV Core-core repulsion = 21082.034222 eV Total energy + Delta-G solvation = -3958.840673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39225 -38.19535 -38.13258 -37.29596 -37.05590 -36.92717 -35.11070 -32.59008 -32.54400 -30.30588 -28.13393 -27.21309 -27.03658 -24.70140 -22.22117 -21.62032 -20.19935 -19.76460 -18.63705 -18.51414 -18.42413 -17.79427 -17.26656 -17.22645 -16.96942 -16.46669 -16.19388 -15.98575 -15.50242 -15.16593 -14.79410 -14.28209 -14.15290 -14.00148 -13.98212 -13.82154 -13.65238 -13.48192 -13.24775 -13.16906 -13.14046 -13.11022 -13.02216 -12.90987 -12.73948 -12.57355 -12.48217 -12.28999 -12.05495 -11.78708 -11.65862 -11.38557 -11.29626 -11.10168 -10.49668 -10.25200 -10.05437 -8.16055 -6.25637 -0.78514 -0.63846 1.43704 1.45661 1.53131 1.53356 1.82831 2.44537 2.84827 2.93667 2.98887 3.17820 3.23147 3.41572 3.45024 3.61714 4.02712 4.05960 4.07530 4.12257 4.35410 4.37732 4.55910 4.57217 4.59671 4.70344 4.75727 4.81564 4.91232 4.92809 5.06649 5.16712 5.25985 5.30841 5.42995 5.58875 5.82096 5.91752 6.17751 6.30515 6.91682 7.43148 8.95131 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.001935 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.986486 B =14464.046001 C =15022.230391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.629 3.371 3 O -0.998 6.998 4 O -0.995 6.995 5 N -1.046 6.046 6 C 0.141 3.859 7 C -0.128 4.128 8 C -0.597 4.597 9 S 2.606 3.394 10 O -1.004 7.004 11 O -0.986 6.986 12 N -1.115 6.115 13 C 0.117 3.883 14 C -0.107 4.107 15 C 0.021 3.979 16 C -0.543 4.543 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.112 3.888 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.422 0.578 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.007 0.993 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.129 0.871 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 13.721 -18.743 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.729 3.271 3 O -0.989 6.989 4 O -0.986 6.986 5 N -0.885 5.885 6 C 0.016 3.984 7 C -0.150 4.150 8 C -0.731 4.731 9 S 2.704 3.296 10 O -0.994 6.994 11 O -0.976 6.976 12 N -0.875 5.875 13 C -0.009 4.009 14 C -0.146 4.146 15 C -0.017 4.017 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.013 4.013 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.168 0.832 28 H 0.109 0.891 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.197 0.803 32 H 0.184 0.816 33 H 0.257 0.743 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.146 0.854 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.123 14.475 -19.952 27.925 hybrid contribution -0.697 -0.756 1.331 1.682 sum -13.821 13.719 -18.621 26.944 Atomic orbital electron populations 1.30384 1.23277 1.13618 1.13148 1.04044 0.79227 0.72198 0.71597 1.93558 1.79907 1.39527 1.85933 1.93556 1.79870 1.62650 1.62497 1.60091 1.85635 1.18718 1.24038 1.23039 0.99419 0.83949 0.92014 1.23040 1.01733 0.97973 0.92301 1.30422 1.19066 1.15592 1.07991 1.04846 0.75887 0.73979 0.74936 1.93564 1.36406 1.84346 1.85069 1.93559 1.85568 1.33235 1.85269 1.55366 1.82953 1.19013 1.30162 1.21392 1.01497 0.79667 0.98355 1.21621 1.01594 0.97178 0.94187 1.19002 0.95425 0.92025 0.95264 1.21691 1.48151 0.94232 0.94006 0.92238 1.25920 0.95004 0.96468 1.02416 1.70068 1.49708 1.01423 1.35918 0.85578 0.79033 0.76917 0.79966 1.19035 1.21109 1.19681 1.23316 1.00043 0.96655 0.81278 0.83436 0.84014 0.83231 0.89121 0.85305 0.87713 0.80254 0.81551 0.74274 0.89069 0.91885 0.93276 0.91182 0.97458 0.98887 0.92847 0.85352 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.18 10.99 113.37 1.25 -0.94 16 2 S 2.63 36.26 6.57 -56.49 -0.37 35.89 16 3 O -1.00 -22.43 18.02 -127.65 -2.30 -24.73 16 4 O -0.99 -21.45 18.02 -127.65 -2.30 -23.75 16 5 N -1.05 -11.99 3.99 -529.63 -2.12 -14.10 16 6 C 0.14 1.14 8.48 86.48 0.73 1.87 16 7 C -0.13 -1.45 3.84 -10.13 -0.04 -1.49 16 8 C -0.60 -5.40 5.93 71.98 0.43 -4.97 16 9 S 2.61 53.52 5.45 -56.49 -0.31 53.21 16 10 O -1.00 -30.43 17.50 -127.65 -2.23 -32.67 16 11 O -0.99 -24.57 18.08 -127.65 -2.31 -26.87 16 12 N -1.12 -23.83 5.89 -187.48 -1.10 -24.93 16 13 C 0.12 3.12 6.13 86.38 0.53 3.65 16 14 C -0.11 -3.78 5.30 30.60 0.16 -3.62 16 15 C 0.02 1.00 4.97 29.85 0.15 1.15 16 16 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 20 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.11 1.21 8.47 86.48 0.73 1.94 16 25 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.13 0.11 8.10 -2.39 -0.02 0.09 16 30 H 0.10 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.18 0.30 7.84 -2.39 -0.02 0.28 16 32 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.42 8.05 8.62 -96.75 -0.83 7.22 16 34 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.06 1.87 7.70 -2.39 -0.02 1.85 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.13 0.48 7.89 -2.39 -0.02 0.46 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -88.99 380.22 -5.91 -94.89 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.19 Total: 3.48 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.64 Total: -31.04 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -2.93 Total: -93.30 kcal Atomic # 8 Polarization: -98.88 SS G_CDS: -9.14 Total: -108.02 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 89.78 SS G_CDS: -0.68 Total: 89.10 kcal Total: -88.99 -5.91 -94.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209406200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.754 kcal (2) G-P(sol) polarization free energy of solvation -88.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds