Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42099 * 108.57758 * 2 1 4 4 O 1.42101 * 108.57444 * 228.97568 * 2 1 3 5 5 C 1.81402 * 101.92274 * 114.48635 * 2 1 3 6 6 C 1.50692 * 109.46959 * 180.02562 * 5 2 1 7 7 O 1.21276 * 120.00364 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99931 * 179.97438 * 6 5 2 9 9 N 1.40103 * 120.00279 * 179.97438 * 8 6 5 10 10 C 1.34777 * 120.00279 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09000 * 109.46908 * 305.51347 * 1 2 3 28 28 H 1.09000 * 109.47228 * 65.50920 * 1 2 3 29 29 H 1.08994 * 109.47083 * 185.51669 * 1 2 3 30 30 H 1.08998 * 109.46942 * 59.99411 * 5 2 1 31 31 H 1.09001 * 109.46834 * 300.00374 * 5 2 1 32 32 H 0.97005 * 120.00017 * 0.02562 * 8 6 5 33 33 H 0.97002 * 119.99921 * 0.02562 * 9 8 6 34 34 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 35 35 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 36 36 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 37 37 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 38 38 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 40 40 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6153 6 6 3.6827 -0.8171 1.7956 7 8 4.4218 -0.4186 0.9206 8 7 4.1974 -1.3328 2.9295 9 7 5.5863 -1.4091 3.0970 10 6 6.1010 -1.9243 4.2311 11 8 5.3618 -2.3223 5.1063 12 6 7.5949 -2.0057 4.4115 13 6 7.9063 -2.6163 5.7536 14 6 8.1438 -1.8079 6.8421 15 6 8.4370 -2.3668 8.0761 16 6 8.4877 -3.7437 8.2310 17 6 8.2472 -4.5713 7.1582 18 6 7.9488 -4.0149 5.9004 19 6 7.6995 -4.8555 4.7911 20 1 7.8860 -4.4972 3.7894 21 6 7.2108 -6.1515 4.9909 22 7 6.6866 -6.4824 6.1429 23 14 7.3072 -7.4089 3.6128 24 1 6.0264 -7.4190 2.8615 25 1 8.4175 -7.0517 2.6936 26 1 7.5544 -8.7555 4.1879 27 1 -0.3633 0.5970 0.8365 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0228 0.0988 30 1 1.7611 -1.7369 1.6665 31 1 1.7611 -0.1170 2.4042 32 1 3.6063 -1.6519 3.6293 33 1 6.1775 -1.0903 2.3971 34 1 8.0223 -1.0044 4.3596 35 1 8.0229 -2.6248 3.6230 36 1 8.1064 -0.7342 6.7330 37 1 8.6269 -1.7249 8.9236 38 1 8.7167 -4.1684 9.1972 39 1 8.2868 -5.6435 7.2812 40 1 6.3482 -7.3809 6.2816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261835430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = -82.147409 kcal Electronic energy + Delta-G solvation = -26656.441770 eV Core-core repulsion = 22565.170920 eV Total energy + Delta-G solvation = -4091.270850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35347 -38.95760 -37.39670 -37.26870 -36.27515 -35.19272 -33.65152 -32.45805 -31.68308 -30.22238 -29.55675 -29.35456 -26.67539 -25.01538 -21.77259 -21.39020 -20.97009 -19.56179 -19.11615 -18.07190 -17.76512 -17.19771 -16.70222 -16.65654 -16.33237 -15.64811 -15.59610 -15.41820 -14.71877 -14.57861 -14.29058 -13.76722 -13.69813 -13.67488 -13.51255 -13.31208 -13.07280 -12.62501 -12.31899 -12.25235 -11.87035 -11.57142 -11.53929 -11.50300 -11.21233 -11.18146 -11.08221 -10.93233 -10.75519 -10.70076 -10.44752 -9.55669 -9.49819 -9.41229 -9.18434 -8.27408 -7.39617 -7.35694 -6.75862 -4.37666 -0.51966 1.81292 2.05817 2.33138 2.77291 2.95744 3.05163 3.09086 3.16128 3.23065 3.29335 3.61450 3.83292 3.90925 4.21890 4.32772 4.46865 4.62597 4.63897 4.70183 5.16866 5.32199 5.67971 5.85021 5.96958 6.23264 6.28203 6.46842 6.59922 6.67943 6.75187 7.06616 7.23489 7.36452 7.56857 7.64039 7.80053 7.86818 7.98259 8.08165 8.26554 8.59649 8.67709 8.86011 8.95485 10.18691 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002806 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.567032 B = 9975.549549 C =11275.706980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.461 3.539 3 O -0.920 6.920 4 O -0.918 6.918 5 C -0.654 4.654 6 C 0.537 3.463 7 O -0.536 6.536 8 N -0.505 5.505 9 N -0.540 5.540 10 C 0.518 3.482 11 O -0.509 6.509 12 C -0.056 4.056 13 C -0.189 4.189 14 C -0.076 4.076 15 C -0.242 4.242 16 C -0.103 4.103 17 C -0.161 4.161 18 C 0.132 3.868 19 C -0.461 4.461 20 H 0.076 0.924 21 C 0.079 3.921 22 N -0.788 5.788 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.259 1.259 26 H -0.275 1.275 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.434 0.566 33 H 0.429 0.571 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 8.756 -8.419 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.636 3.364 3 O -0.917 6.917 4 O -0.915 6.915 5 C -0.782 4.782 6 C 0.320 3.680 7 O -0.413 6.413 8 N -0.250 5.250 9 N -0.293 5.293 10 C 0.306 3.694 11 O -0.379 6.379 12 C -0.097 4.097 13 C -0.191 4.191 14 C -0.095 4.095 15 C -0.261 4.261 16 C -0.122 4.122 17 C -0.181 4.181 18 C 0.130 3.870 19 C -0.491 4.491 20 H 0.094 0.906 21 C -0.139 4.139 22 N -0.413 5.413 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.183 1.183 26 H -0.200 1.200 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.276 0.724 33 H 0.271 0.729 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.602 8.798 -8.839 17.033 hybrid contribution -0.974 -1.075 0.291 1.480 sum -12.576 7.722 -8.548 17.055 Atomic orbital electron populations 1.30391 1.26771 1.11826 1.12146 1.07101 0.77559 0.75775 0.75972 1.93604 1.78801 1.34004 1.85263 1.93613 1.78754 1.67186 1.51986 1.30885 1.01401 1.17105 1.28778 1.19121 0.88033 0.78866 0.81936 1.90880 1.60311 1.49042 1.41039 1.44582 0.98126 1.62438 1.19829 1.45594 0.93659 1.67655 1.22356 1.21777 0.92432 0.75756 0.79407 1.90729 1.60858 1.45268 1.41078 1.20199 0.88220 1.01555 0.99707 1.18890 1.14083 0.93774 0.92365 1.20304 0.99485 0.96628 0.93052 1.20307 1.14936 0.94545 0.96343 1.20697 1.00516 0.93652 0.97286 1.21291 1.04417 0.99241 0.93115 1.17328 0.86722 0.90063 0.92912 1.19487 1.38636 0.96887 0.94063 0.90581 1.25848 0.92604 0.99073 0.96411 1.69835 1.26976 1.20412 1.24124 0.86410 0.79612 0.79815 0.81577 1.19752 1.18322 1.19990 0.85142 0.84800 0.85105 0.81777 0.81847 0.72381 0.72942 0.89841 0.88210 0.89600 0.89581 0.89528 0.86520 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.81 10.62 101.05 1.07 -0.74 16 2 S 2.46 19.48 4.60 -107.50 -0.49 18.99 16 3 O -0.92 -11.16 17.94 -59.54 -1.07 -12.23 16 4 O -0.92 -11.48 17.95 -59.52 -1.07 -12.54 16 5 C -0.65 -4.16 6.29 36.00 0.23 -3.93 16 6 C 0.54 6.74 7.96 -10.99 -0.09 6.65 16 7 O -0.54 -8.64 15.46 2.56 0.04 -8.60 16 8 N -0.51 -6.84 6.26 31.22 0.20 -6.64 16 9 N -0.54 -8.37 6.26 31.22 0.20 -8.17 16 10 C 0.52 9.81 7.94 -10.99 -0.09 9.72 16 11 O -0.51 -11.69 15.87 5.56 0.09 -11.60 16 12 C -0.06 -1.02 5.35 -29.04 -0.16 -1.18 16 13 C -0.19 -4.34 4.43 -103.91 -0.46 -4.80 16 14 C -0.08 -1.69 9.66 -39.66 -0.38 -2.07 16 15 C -0.24 -5.44 10.05 -39.29 -0.39 -5.84 16 16 C -0.10 -2.43 10.02 -39.66 -0.40 -2.83 16 17 C -0.16 -4.17 8.68 -38.87 -0.34 -4.51 16 18 C 0.13 3.40 5.56 -106.82 -0.59 2.81 16 19 C -0.46 -11.71 8.46 -37.74 -0.32 -12.03 16 20 H 0.08 1.81 6.36 -52.48 -0.33 1.48 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.79 -20.41 10.98 55.55 0.61 -19.80 16 23 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H 0.13 0.08 8.14 -51.92 -0.42 -0.34 16 28 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.16 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.16 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.43 5.29 8.00 -182.59 -1.46 3.83 16 33 H 0.43 5.91 8.00 -182.59 -1.46 4.45 16 34 H 0.08 1.24 8.06 -51.93 -0.42 0.83 16 35 H 0.10 1.75 6.48 -51.93 -0.34 1.41 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.11 6.23 -52.49 -0.33 2.78 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -39.52 362.74 -9.93 -49.44 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.85 Total: 9.05 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.01 Total: -16.89 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 1.00 Total: -34.61 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -2.01 Total: -44.97 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 19.48 SS G_CDS: -0.49 Total: 18.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.52 -9.93 -49.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261835430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.703 kcal (2) G-P(sol) polarization free energy of solvation -39.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds