Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 N 1.46503 * 109.46043 * 178.61144 * 8 7 6 10 10 S 1.65597 * 119.99998 * 265.07029 * 9 8 7 11 11 O 1.42099 * 104.27308 * 181.07569 * 10 9 8 12 12 O 1.42100 * 104.27828 * 308.92732 * 10 9 8 13 13 C 1.81398 * 104.45048 * 65.00302 * 10 9 8 14 14 C 1.53000 * 109.47097 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47164 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99880 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00167 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99810 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46969 * 89.99467 * 19 17 15 21 21 H 1.48495 * 109.46866 * 209.99796 * 19 17 15 22 22 H 1.48497 * 109.46821 * 329.99678 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 24 24 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 25 25 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 26 26 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 27 27 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 28 28 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 29 29 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 30 30 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 31 31 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 32 32 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 33 33 H 0.97004 * 119.99229 * 85.06857 * 9 8 7 34 34 H 1.09005 * 109.46956 * 299.99258 * 13 10 9 35 35 H 1.08999 * 109.47388 * 59.99715 * 13 10 9 36 36 H 1.08997 * 109.47006 * 299.99773 * 14 13 10 37 37 H 1.09007 * 109.47029 * 60.00048 * 14 13 10 38 38 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.49677 * 301.40907 * 23 8 7 40 40 H 1.09001 * 109.52131 * 181.33314 * 23 8 7 41 41 H 1.09002 * 109.58798 * 353.11753 * 24 5 2 42 42 H 1.08996 * 109.58781 * 113.40224 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 7 1.0405 -2.0683 5.2314 10 16 1.6620 -2.0244 6.7657 11 8 0.6205 -2.5446 7.5805 12 8 2.9108 -2.6935 6.6572 13 6 1.9124 -0.2596 7.1023 14 6 2.4899 -0.0855 8.5084 15 6 2.6985 1.3806 8.7878 16 1 2.4450 2.1147 8.0374 17 6 3.2141 1.7846 10.0011 18 7 3.5232 0.8906 10.9146 19 14 3.4720 3.6020 10.3477 20 1 2.2442 4.1678 10.9621 21 1 4.6152 3.7706 11.2803 22 1 3.7616 4.3121 9.0761 23 6 1.5361 -2.4802 2.8718 24 6 2.4141 -2.0334 1.6987 25 1 -0.3633 0.6379 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3632 -1.0168 0.1497 28 1 3.4667 0.3056 2.9332 29 1 2.1323 1.3291 2.3421 30 1 0.4915 -0.0571 3.5180 31 1 1.7470 0.4520 4.6733 32 1 2.9110 -1.7232 4.3478 33 1 0.1373 -2.3895 5.0828 34 1 2.6058 0.1551 6.3705 35 1 0.9578 0.2623 7.0348 36 1 1.7963 -0.5000 9.2399 37 1 3.4445 -0.6074 8.5763 38 1 3.8856 1.1748 11.7683 39 1 0.4857 -2.3600 2.6066 40 1 1.7366 -3.5274 3.0981 41 1 2.1225 -2.5733 0.7978 42 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318888098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -151.245749 kcal Electronic energy + Delta-G solvation = -26456.334648 eV Core-core repulsion = 22497.511420 eV Total energy + Delta-G solvation = -3958.823228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.19124 -37.51267 -36.63673 -36.29678 -35.51989 -35.02918 -33.95116 -31.57975 -31.13985 -30.33180 -29.87804 -25.68057 -24.19513 -23.74694 -21.66721 -21.00892 -19.33282 -18.91796 -18.21558 -17.49951 -16.76369 -16.52560 -16.42988 -16.17389 -15.51062 -14.98554 -14.87236 -14.72464 -14.54831 -14.31877 -13.88791 -13.77655 -13.57823 -13.46283 -13.01478 -12.90481 -12.55399 -12.43414 -12.18994 -11.93892 -11.81523 -11.72780 -11.67103 -11.57896 -11.55464 -11.44374 -11.33553 -11.10873 -11.00018 -10.70920 -10.44951 -10.40117 -9.86448 -9.53626 -9.40909 -9.09563 -8.53349 -6.15429 -4.21291 -0.12847 0.72406 2.21910 3.03707 3.24172 3.30894 3.33136 3.50841 3.73252 4.14201 4.17778 4.34473 4.36660 4.42501 4.51604 4.63927 4.66762 4.77470 4.83715 5.00854 5.02138 5.19988 5.23221 5.35751 5.38529 5.45773 5.54922 5.56950 5.63780 5.71687 5.80421 5.86427 6.09405 6.21147 6.44427 7.01504 7.26010 7.31958 7.77181 8.13649 8.82124 9.43870 10.95562 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003119 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.338011 B = 8974.615417 C =10435.520779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.611 3.389 3 O -0.953 6.953 4 O -0.956 6.956 5 N -1.000 6.000 6 C 0.121 3.879 7 C -0.166 4.166 8 C 0.149 3.851 9 N -1.123 6.123 10 S 2.590 3.410 11 O -0.968 6.968 12 O -0.966 6.966 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.138 4.138 24 C 0.122 3.878 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.412 0.588 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.631 -3.945 -22.150 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.704 3.296 3 O -0.944 6.944 4 O -0.947 6.947 5 N -0.838 5.838 6 C -0.005 4.005 7 C -0.207 4.207 8 C 0.041 3.959 9 N -0.879 5.879 10 S 2.687 3.313 11 O -0.958 6.958 12 O -0.956 6.956 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.178 4.178 24 C -0.004 4.004 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.607 -4.449 -22.086 23.479 hybrid contribution -1.105 1.393 0.386 1.820 sum -7.712 -3.056 -21.701 23.232 Atomic orbital electron populations 1.30601 1.28906 1.11562 1.11338 1.04905 0.77638 0.74041 0.73018 1.93623 1.77455 1.37706 1.85590 1.93607 1.77537 1.61735 1.61804 1.57778 1.84189 1.14511 1.27319 1.21478 1.01209 0.92677 0.85087 1.22706 1.01215 0.97064 0.99687 1.20727 0.95955 0.92823 0.86388 1.55911 1.26614 1.81515 1.23812 1.05641 0.74122 0.79208 0.72296 1.93556 1.57098 1.78602 1.66579 1.93547 1.44846 1.72201 1.84987 1.30556 1.10296 1.20792 1.10770 1.18962 0.96643 0.99957 0.85523 1.20985 1.43581 0.90895 1.00542 0.92013 1.25064 0.95180 0.98096 0.96108 1.69946 1.42931 1.33536 1.06391 0.86476 0.77910 0.84623 0.78317 1.20501 1.21016 1.19716 1.22211 1.00659 1.00634 0.94322 1.21453 1.01138 0.78917 0.98868 0.85291 0.85636 0.85443 0.89961 0.88497 0.90548 0.89089 0.88422 0.75534 0.86146 0.86027 0.94888 0.94822 0.92502 0.90920 0.89527 0.88723 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.64 10.99 101.05 1.11 -1.53 16 2 S 2.61 19.38 6.05 -107.50 -0.65 18.73 16 3 O -0.95 -10.47 16.72 -57.54 -0.96 -11.43 16 4 O -0.96 -10.00 16.73 -57.54 -0.96 -10.96 16 5 N -1.00 -7.09 3.22 -113.53 -0.37 -7.45 16 6 C 0.12 0.92 6.31 -3.71 -0.02 0.90 16 7 C -0.17 -1.31 5.65 -26.61 -0.15 -1.46 16 8 C 0.15 1.37 2.65 -67.89 -0.18 1.19 16 9 N -1.12 -12.20 5.36 -4.85 -0.03 -12.22 16 10 S 2.59 42.64 5.44 -107.50 -0.58 42.06 16 11 O -0.97 -19.08 18.08 -57.54 -1.04 -20.12 16 12 O -0.97 -18.84 17.39 -57.54 -1.00 -19.84 16 13 C -0.59 -10.35 5.13 37.16 0.19 -10.16 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 15 C -0.52 -13.88 9.11 -34.44 -0.31 -14.19 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.14 -0.91 5.61 -26.62 -0.15 -1.06 16 24 C 0.12 0.80 6.31 -3.71 -0.02 0.77 16 25 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.67 7.10 -51.93 -0.37 0.30 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.78 5.75 -51.93 -0.30 0.49 16 32 H 0.10 1.00 7.48 -51.92 -0.39 0.61 16 33 H 0.41 3.57 8.80 -34.48 -0.30 3.27 16 34 H 0.12 1.83 6.79 -51.92 -0.35 1.48 16 35 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.51 7.11 -51.93 -0.37 0.14 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -39.13 363.97 -10.44 -49.57 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.27 Total: -0.80 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 0.22 Total: -23.48 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.34 Total: -44.94 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -3.97 Total: -62.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 62.02 SS G_CDS: -1.24 Total: 60.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.13 -10.44 -49.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318888098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.679 kcal (2) G-P(sol) polarization free energy of solvation -39.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds