Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 N 1.46503 * 109.46043 * 178.61144 * 8 7 6 10 10 S 1.65597 * 119.99998 * 265.07029 * 9 8 7 11 11 O 1.42099 * 104.27308 * 181.07569 * 10 9 8 12 12 O 1.42100 * 104.27828 * 308.92732 * 10 9 8 13 13 C 1.81398 * 104.45048 * 65.00302 * 10 9 8 14 14 C 1.53000 * 109.47097 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47164 * 179.97438 * 14 13 10 16 16 H 1.07997 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99880 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00167 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99810 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46969 * 89.99467 * 19 17 15 21 21 H 1.48495 * 109.46866 * 209.99796 * 19 17 15 22 22 H 1.48497 * 109.46821 * 329.99678 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 24 24 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 25 25 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 26 26 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 27 27 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 28 28 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 29 29 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 30 30 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 31 31 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 32 32 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 33 33 H 0.97004 * 119.99229 * 85.06857 * 9 8 7 34 34 H 1.09005 * 109.46956 * 299.99258 * 13 10 9 35 35 H 1.08999 * 109.47388 * 59.99715 * 13 10 9 36 36 H 1.08997 * 109.47006 * 299.99773 * 14 13 10 37 37 H 1.09007 * 109.47029 * 60.00048 * 14 13 10 38 38 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.49677 * 301.40907 * 23 8 7 40 40 H 1.09001 * 109.52131 * 181.33314 * 23 8 7 41 41 H 1.09002 * 109.58798 * 353.11753 * 24 5 2 42 42 H 1.08996 * 109.58781 * 113.40224 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 7 1.0405 -2.0683 5.2314 10 16 1.6620 -2.0244 6.7657 11 8 0.6205 -2.5446 7.5805 12 8 2.9108 -2.6935 6.6572 13 6 1.9124 -0.2596 7.1023 14 6 2.4899 -0.0855 8.5084 15 6 2.6985 1.3806 8.7878 16 1 2.4450 2.1147 8.0374 17 6 3.2141 1.7846 10.0011 18 7 3.5232 0.8906 10.9146 19 14 3.4720 3.6020 10.3477 20 1 2.2442 4.1678 10.9621 21 1 4.6152 3.7706 11.2803 22 1 3.7616 4.3121 9.0761 23 6 1.5361 -2.4802 2.8718 24 6 2.4141 -2.0334 1.6987 25 1 -0.3633 0.6379 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3632 -1.0168 0.1497 28 1 3.4667 0.3056 2.9332 29 1 2.1323 1.3291 2.3421 30 1 0.4915 -0.0571 3.5180 31 1 1.7470 0.4520 4.6733 32 1 2.9110 -1.7232 4.3478 33 1 0.1373 -2.3895 5.0828 34 1 2.6058 0.1551 6.3705 35 1 0.9578 0.2623 7.0348 36 1 1.7963 -0.5000 9.2399 37 1 3.4445 -0.6074 8.5763 38 1 3.8856 1.1748 11.7683 39 1 0.4857 -2.3600 2.6066 40 1 1.7366 -3.5274 3.0981 41 1 2.1225 -2.5733 0.7978 42 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318888098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -184.871926 kcal Electronic energy + Delta-G solvation = -26457.792789 eV Core-core repulsion = 22497.511420 eV Total energy + Delta-G solvation = -3960.281368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82393 -38.18709 -38.10122 -36.99252 -36.96889 -35.87593 -35.82315 -33.13758 -32.01565 -31.08520 -30.21224 -27.57818 -24.87592 -24.40093 -23.42519 -21.63989 -20.31807 -19.82317 -19.06268 -18.80623 -18.14047 -17.38168 -17.15883 -17.08973 -16.95968 -16.50927 -16.08491 -15.53991 -15.32654 -15.11884 -14.88463 -14.61065 -14.44184 -14.10474 -13.88995 -13.74405 -13.69553 -13.51125 -13.18322 -13.13344 -13.10682 -12.92787 -12.86675 -12.85306 -12.70521 -12.49801 -12.22923 -12.18899 -12.12154 -11.97422 -11.87302 -11.72901 -11.34371 -11.09413 -10.62442 -10.29724 -9.95623 -8.23835 -6.37235 -0.64981 -0.63644 1.42911 1.44144 1.55151 1.68893 1.88299 2.39715 2.84802 3.01568 3.10216 3.20701 3.30630 3.62013 3.85980 3.95296 3.99731 4.12509 4.15056 4.16611 4.24050 4.30020 4.37860 4.49243 4.72852 4.79887 4.86734 4.93521 4.98105 5.01461 5.09572 5.22946 5.27819 5.31747 5.33600 5.45486 5.67313 5.71601 6.08838 6.23422 6.77167 7.33102 8.88428 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003119 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.338011 B = 8974.615417 C =10435.520779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.614 3.386 3 O -0.997 6.997 4 O -0.994 6.994 5 N -1.000 6.000 6 C 0.119 3.881 7 C -0.165 4.165 8 C 0.137 3.863 9 N -1.099 6.099 10 S 2.615 3.385 11 O -1.002 7.002 12 O -1.000 7.000 13 C -0.589 4.589 14 C 0.020 3.980 15 C -0.535 4.535 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.256 1.256 23 C -0.132 4.132 24 C 0.119 3.881 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.427 0.573 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 -2.877 -24.238 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.712 3.288 3 O -0.988 6.988 4 O -0.985 6.985 5 N -0.838 5.838 6 C -0.007 4.007 7 C -0.205 4.205 8 C 0.030 3.970 9 N -0.860 5.860 10 S 2.712 3.288 11 O -0.992 6.992 12 O -0.990 6.990 13 C -0.721 4.721 14 C -0.019 4.019 15 C -0.574 4.574 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.180 1.180 23 C -0.172 4.172 24 C -0.007 4.007 25 H 0.165 0.835 26 H 0.158 0.842 27 H 0.169 0.831 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.704 -3.377 -24.185 25.924 hybrid contribution -0.497 1.005 0.943 1.464 sum -9.201 -2.372 -23.242 25.109 Atomic orbital electron populations 1.30384 1.23401 1.13713 1.13052 1.04565 0.79413 0.72475 0.72340 1.93565 1.79634 1.39532 1.86027 1.93556 1.79596 1.62345 1.62981 1.57631 1.84839 1.14553 1.26744 1.21480 1.00789 0.93233 0.85223 1.22709 1.02888 0.95540 0.99412 1.21023 0.94964 0.94568 0.86478 1.55322 1.27506 1.81255 1.21889 1.04538 0.73006 0.78122 0.73127 1.93503 1.57907 1.79053 1.68774 1.93505 1.46768 1.72746 1.85938 1.30459 1.11770 1.22850 1.06976 1.18814 0.95056 0.98815 0.89213 1.21532 1.42661 0.92266 1.00895 0.90303 1.26096 0.95001 1.03068 0.96102 1.70099 1.44389 1.36047 1.07016 0.85349 0.77801 0.78721 0.78614 1.19708 1.21188 1.17992 1.22207 1.02318 1.00030 0.92679 1.21526 1.00878 0.78776 0.99471 0.83487 0.84150 0.83146 0.90981 0.87753 0.87828 0.89829 0.90005 0.73599 0.83752 0.83499 0.97726 0.97698 0.92511 0.88096 0.89371 0.87293 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.24 10.99 113.37 1.25 -1.00 16 2 S 2.61 34.11 6.05 -56.49 -0.34 33.77 16 3 O -1.00 -21.11 16.72 -127.65 -2.13 -23.25 16 4 O -0.99 -19.78 16.73 -127.65 -2.14 -21.91 16 5 N -1.00 -12.17 3.22 -513.09 -1.65 -13.82 16 6 C 0.12 1.59 6.31 86.36 0.55 2.13 16 7 C -0.16 -2.12 5.65 30.67 0.17 -1.94 16 8 C 0.14 2.20 2.65 45.02 0.12 2.32 16 9 N -1.10 -21.40 5.36 -169.27 -0.91 -22.30 16 10 S 2.62 85.30 5.44 -56.49 -0.31 84.99 16 11 O -1.00 -39.51 18.08 -127.65 -2.31 -41.82 16 12 O -1.00 -39.60 17.39 -127.65 -2.22 -41.82 16 13 C -0.59 -20.23 5.13 71.98 0.37 -19.86 16 14 C 0.02 1.00 4.98 29.85 0.15 1.15 16 15 C -0.53 -28.57 9.11 25.60 0.23 -28.34 16 16 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 18 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 19 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C -0.13 -1.35 5.61 30.67 0.17 -1.18 16 24 C 0.12 1.32 6.31 86.36 0.55 1.86 16 25 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.15 -0.05 8.14 -2.39 -0.02 -0.06 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.25 7.10 -2.39 -0.02 1.23 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.22 5.75 -2.39 -0.01 1.20 16 32 H 0.08 1.60 7.48 -2.38 -0.02 1.59 16 33 H 0.43 6.04 8.80 -96.74 -0.85 5.19 16 34 H 0.14 4.21 6.79 -2.39 -0.02 4.19 16 35 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.92 7.11 -2.39 -0.02 0.91 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -87.66 363.97 -5.50 -93.16 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.18 Total: 9.15 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 4.01 Total: -44.64 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -2.27 Total: -92.12 kcal Atomic # 8 Polarization: -120.00 SS G_CDS: -8.80 Total: -128.80 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 119.41 SS G_CDS: -0.65 Total: 118.76 kcal Total: -87.66 -5.50 -93.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318888098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.708 kcal (2) G-P(sol) polarization free energy of solvation -87.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds