Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57275 * 2 1 4 4 O 1.42099 * 108.58004 * 228.97343 * 2 1 3 5 5 C 1.81403 * 101.92231 * 114.48411 * 2 1 3 6 6 C 1.53000 * 109.46905 * 185.90155 * 5 2 1 7 7 C 1.50696 * 113.00111 * 294.10459 * 6 5 2 8 8 O 1.21272 * 120.00084 * 345.67081 * 7 6 5 9 9 N 1.34779 * 119.99911 * 165.67584 * 7 6 5 10 10 C 1.39266 * 120.00014 * 183.60324 * 9 7 6 11 11 C 1.39676 * 119.57307 * 340.18235 * 10 9 7 12 12 C 1.38653 * 119.49624 * 180.02562 * 11 10 9 13 13 C 1.38356 * 118.66952 * 359.97438 * 12 11 10 14 14 C 1.40579 * 119.12553 * 0.02562 * 13 12 11 15 15 C 1.41333 * 119.78270 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00486 * 5.52060 * 15 14 13 17 17 C 1.40034 * 119.99961 * 185.52813 * 15 14 13 18 18 N 1.30741 * 119.99715 * 5.50400 * 17 15 14 19 19 Si 1.86802 * 119.99936 * 185.51025 * 17 15 14 20 20 H 1.48501 * 109.47303 * 94.99338 * 19 17 15 21 21 H 1.48504 * 109.46622 * 214.99291 * 19 17 15 22 22 H 1.48497 * 109.47034 * 334.99216 * 19 17 15 23 23 N 1.31902 * 119.57847 * 159.91823 * 10 9 7 24 24 C 1.54028 * 113.92608 * 66.04369 * 6 5 2 25 25 O 1.44168 * 85.52192 * 136.81440 * 24 6 5 26 26 C 1.44175 * 93.33835 * 335.80609 * 25 24 6 27 27 H 1.08995 * 109.47092 * 305.50860 * 1 2 3 28 28 H 1.09002 * 109.47205 * 65.51864 * 1 2 3 29 29 H 1.09005 * 109.46677 * 185.51399 * 1 2 3 30 30 H 1.09005 * 109.46815 * 65.90522 * 5 2 1 31 31 H 1.08994 * 109.47083 * 305.90549 * 5 2 1 32 32 H 0.96996 * 119.99998 * 3.59378 * 9 7 6 33 33 H 1.08004 * 120.25272 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.66702 * 180.02562 * 12 11 10 35 35 H 1.07999 * 120.43632 * 179.97438 * 13 12 11 36 36 H 0.96999 * 119.99851 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.86093 * 250.96127 * 24 6 5 38 38 H 1.09001 * 113.86551 * 22.66067 * 24 6 5 39 39 H 1.09006 * 113.86264 * 270.04417 * 26 25 24 40 40 H 1.09000 * 113.86620 * 138.34550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6980 -0.6845 1.8611 7 6 4.4797 -1.5496 0.9063 8 8 3.9077 -2.3826 0.2357 9 7 5.8145 -1.3977 0.7978 10 6 6.5265 -2.1442 -0.1377 11 6 5.9659 -3.3129 -0.6580 12 6 6.6765 -4.0552 -1.5890 13 6 7.9280 -3.6108 -1.9766 14 6 8.4374 -2.4264 -1.4163 15 6 9.7147 -1.9600 -1.8020 16 1 10.2581 -2.4621 -2.5888 17 6 10.2757 -0.8469 -1.1638 18 7 9.6683 -0.3050 -0.1408 19 14 11.8919 -0.1365 -1.7743 20 1 11.6182 0.9828 -2.7111 21 1 12.6793 0.3657 -0.6197 22 1 12.6629 -1.1931 -2.4773 23 7 7.7194 -1.7356 -0.5251 24 6 4.2589 0.7423 2.0092 25 8 5.0229 0.2064 3.1081 26 6 4.0944 -0.8725 3.3376 27 1 -0.3633 0.5969 0.8365 28 1 -0.3634 0.4259 -0.9353 29 1 -0.3633 -1.0230 0.0988 30 1 1.8533 -1.7727 1.6288 31 1 1.6742 -0.1770 2.3971 32 1 6.2791 -0.7683 1.3713 33 1 4.9868 -3.6365 -0.3369 34 1 6.2609 -4.9616 -2.0038 35 1 8.5064 -4.1670 -2.6995 36 1 10.0567 0.4663 0.3011 37 1 4.8679 1.0665 1.1654 38 1 3.5142 1.4801 2.3081 39 1 3.2995 -0.6278 4.0422 40 1 4.5730 -1.8290 3.5475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413470867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -78.919974 kcal Electronic energy + Delta-G solvation = -28309.581247 eV Core-core repulsion = 24218.450349 eV Total energy + Delta-G solvation = -4091.130898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.67226 -40.69156 -39.32231 -37.91233 -36.93790 -36.12004 -35.11811 -33.71306 -32.37175 -31.18322 -30.41435 -27.79980 -27.74188 -27.20483 -24.94938 -23.54734 -22.65653 -20.72482 -19.83556 -19.33925 -18.82380 -18.11564 -17.97188 -17.43877 -16.99099 -16.81665 -16.56183 -16.47718 -16.33580 -16.11194 -15.99631 -15.31338 -15.13208 -14.67706 -14.25938 -14.03093 -13.91122 -13.87330 -13.68561 -13.58903 -13.04299 -12.99343 -12.93794 -12.89878 -12.83773 -12.67371 -12.63201 -12.03956 -11.89816 -11.85139 -11.61468 -11.22902 -11.14763 -11.03570 -10.41018 -10.01774 -9.67518 -9.06449 -8.34796 -6.52964 -0.94256 0.62430 1.04739 1.40501 1.43349 1.54990 1.57961 1.81682 1.90928 2.22868 2.34550 2.65695 2.82914 3.00786 3.13970 3.21226 3.49542 3.87789 3.90388 4.10320 4.15309 4.25065 4.30244 4.34561 4.43969 4.56416 4.59805 4.67705 4.79234 4.84990 4.89252 4.95195 4.96226 4.98138 5.21584 5.57691 5.61744 5.89757 6.01532 6.23391 6.41534 6.74996 6.87964 7.06384 8.05934 8.43238 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003678 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.534962 B = 7611.253953 C = 8128.706929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.378 3.622 3 O -0.978 6.978 4 O -0.980 6.980 5 C -0.580 4.580 6 C -0.150 4.150 7 C 0.505 3.495 8 O -0.507 6.507 9 N -0.640 5.640 10 C 0.340 3.660 11 C -0.328 4.328 12 C -0.050 4.050 13 C -0.305 4.305 14 C 0.244 3.756 15 C -0.468 4.468 16 H 0.093 0.907 17 C 0.026 3.974 18 N -0.757 5.757 19 Si 0.991 3.009 20 H -0.267 1.267 21 H -0.266 1.266 22 H -0.253 1.253 23 N -0.536 5.536 24 C 0.043 3.957 25 O -0.393 6.393 26 C 0.078 3.922 27 H 0.167 0.833 28 H 0.132 0.868 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.205 0.795 32 H 0.415 0.585 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.288 3.711 10.467 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.567 3.433 3 O -0.975 6.975 4 O -0.977 6.977 5 C -0.710 4.710 6 C -0.154 4.154 7 C 0.291 3.709 8 O -0.382 6.382 9 N -0.285 5.285 10 C 0.105 3.895 11 C -0.353 4.353 12 C -0.075 4.075 13 C -0.328 4.328 14 C 0.118 3.882 15 C -0.499 4.499 16 H 0.111 0.889 17 C -0.196 4.196 18 N -0.379 5.379 19 Si 0.811 3.189 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.176 1.176 23 N -0.256 5.256 24 C -0.034 4.034 25 O -0.312 6.312 26 C 0.001 3.999 27 H 0.186 0.814 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.223 0.777 32 H 0.253 0.747 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.522 4.437 9.952 21.490 hybrid contribution 0.246 -0.642 -0.319 0.757 sum -18.276 3.795 9.634 21.006 Atomic orbital electron populations 1.30042 1.20241 1.14075 1.13728 1.08597 0.81311 0.74866 0.78565 1.93550 1.81240 1.35608 1.87101 1.93672 1.80783 1.67233 1.55994 1.30175 0.98932 1.17746 1.24102 1.23705 0.94411 0.97656 0.99657 1.20629 0.81666 0.85035 0.83592 1.90640 1.69188 1.34449 1.43931 1.43238 1.07599 1.41708 1.36003 1.18923 0.90910 0.89088 0.90578 1.22148 1.04813 0.99362 1.08960 1.21229 0.93380 0.98084 0.94760 1.21932 0.99261 1.01812 1.09773 1.18719 0.93051 0.88639 0.87802 1.19959 0.99960 1.12041 1.17960 0.88858 1.27009 1.02666 0.96100 0.93835 1.70168 1.36882 1.16220 1.14617 0.85076 0.76225 0.78849 0.78775 1.19190 1.19018 1.17615 1.68002 1.05678 1.33304 1.18609 1.24491 0.95481 0.93179 0.90275 1.89783 1.43670 1.45354 1.52427 1.24361 0.93121 0.92367 0.90078 0.81450 0.84910 0.82905 0.81464 0.77739 0.74715 0.83626 0.84898 0.86641 0.90956 0.90626 0.83619 0.82750 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.60 10.62 113.37 1.20 -3.39 16 2 S 2.38 49.64 5.14 -56.49 -0.29 49.35 16 3 O -0.98 -26.11 16.60 -127.37 -2.11 -28.23 16 4 O -0.98 -34.90 15.74 -119.41 -1.88 -36.78 16 5 C -0.58 -7.61 4.86 71.98 0.35 -7.26 16 6 C -0.15 -3.55 0.96 -52.23 -0.05 -3.60 16 7 C 0.50 19.15 6.42 87.66 0.56 19.71 16 8 O -0.51 -21.72 10.78 17.16 0.18 -21.53 16 9 N -0.64 -28.88 5.18 -308.37 -1.60 -30.47 16 10 C 0.34 18.57 7.52 133.25 1.00 19.58 16 11 C -0.33 -17.28 8.91 22.72 0.20 -17.08 16 12 C -0.05 -2.52 10.15 22.40 0.23 -2.29 16 13 C -0.31 -16.38 9.83 22.87 0.22 -16.16 16 14 C 0.24 14.54 6.53 40.19 0.26 14.80 16 15 C -0.47 -26.54 9.13 23.47 0.21 -26.32 16 16 H 0.09 4.92 7.85 -2.91 -0.02 4.90 16 17 C 0.03 1.35 5.48 85.29 0.47 1.82 16 18 N -0.76 -42.01 11.52 21.84 0.25 -41.76 16 19 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 N -0.54 -32.10 7.96 -186.36 -1.48 -33.59 16 24 C 0.04 1.03 6.41 72.27 0.46 1.50 16 25 O -0.39 -10.11 11.29 -148.98 -1.68 -11.79 16 26 C 0.08 1.37 8.34 72.27 0.60 1.97 16 27 H 0.17 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.17 1.73 7.94 -2.39 -0.02 1.71 16 31 H 0.21 -0.06 8.06 -2.39 -0.02 -0.08 16 32 H 0.42 18.05 7.08 -92.71 -0.66 17.40 16 33 H 0.15 7.39 5.10 -14.83 -0.08 7.32 16 34 H 0.13 5.59 8.06 -2.91 -0.02 5.56 16 35 H 0.12 5.62 8.06 -2.91 -0.02 5.60 16 36 H 0.28 13.99 8.29 -92.71 -0.77 13.23 16 37 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 38 H 0.15 2.30 7.95 -2.39 -0.02 2.28 16 39 H 0.16 1.00 8.05 -2.38 -0.02 0.98 16 40 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -93.06 347.11 -0.47 -93.53 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.38 Total: 36.52 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.73 Total: -16.73 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -2.83 Total: -105.82 kcal Atomic # 8 Polarization: -92.83 SS G_CDS: -5.49 Total: -98.33 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 49.64 SS G_CDS: -0.29 Total: 49.35 kcal Total: -93.06 -0.47 -93.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413470867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.608 kcal (2) G-P(sol) polarization free energy of solvation -93.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds