Wall clock time and date at job start Sat Apr 11 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 110.53844 * 2 1 4 4 O 1.42100 * 110.54049 * 223.25336 * 2 1 3 5 5 C 1.76200 * 104.44930 * 111.62461 * 2 1 3 6 6 C 1.38632 * 120.47171 * 246.34890 * 5 2 1 7 7 C 1.38579 * 118.49107 * 179.72820 * 6 5 2 8 8 C 1.38605 * 119.35065 * 0.27839 * 7 6 5 9 9 N 1.31502 * 120.89791 * 359.97438 * 8 7 6 10 10 C 1.32740 * 121.64373 * 359.97438 * 9 8 7 11 11 C 1.48172 * 119.72011 * 180.02562 * 10 9 8 12 12 O 1.21518 * 119.99789 * 174.24718 * 11 10 9 13 13 N 1.34777 * 120.00016 * 354.25439 * 11 10 9 14 14 C 1.47014 * 125.64779 * 0.02562 * 13 11 10 15 15 C 1.54333 * 107.26935 * 181.01984 * 14 13 11 16 16 C 1.55157 * 102.93906 * 22.19466 * 15 14 13 17 17 O 1.42906 * 111.00310 * 82.56974 * 16 15 14 18 18 C 1.50701 * 111.00051 * 206.38105 * 16 15 14 19 19 H 1.07990 * 120.00037 * 0.02562 * 18 16 15 20 20 C 1.37877 * 119.99525 * 180.02562 * 18 16 15 21 21 N 1.31512 * 120.00343 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99661 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47648 * 59.99300 * 22 20 18 24 24 H 1.48501 * 109.47135 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46889 * 299.99120 * 22 20 18 26 26 C 1.47424 * 125.64457 * 179.71170 * 13 11 10 27 27 H 1.09011 * 109.47219 * 313.95022 * 1 2 3 28 28 H 1.08998 * 109.47585 * 73.94906 * 1 2 3 29 29 H 1.08998 * 109.47337 * 193.95540 * 1 2 3 30 30 H 1.08007 * 120.75342 * 0.02562 * 6 5 2 31 31 H 1.07996 * 120.32688 * 180.25607 * 7 6 5 32 32 H 1.07994 * 119.55145 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.88607 * 300.43665 * 14 13 11 34 34 H 1.09008 * 109.88396 * 61.45534 * 14 13 11 35 35 H 1.09007 * 110.71565 * 140.55595 * 15 14 13 36 36 H 1.08995 * 110.72145 * 263.83131 * 15 14 13 37 37 H 0.96703 * 113.99803 * 179.97438 * 17 16 15 38 38 H 0.96997 * 120.00124 * 180.02562 * 21 20 18 39 39 H 1.08998 * 110.36751 * 274.74463 * 26 13 11 40 40 H 1.08996 * 110.37005 * 37.07126 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5862 6 6 2.8932 0.1818 2.5112 7 6 3.2151 -0.3533 3.7483 8 6 2.8962 -1.6743 4.0209 9 7 2.2937 -2.4227 3.1229 10 6 1.9674 -1.9485 1.9268 11 6 1.2887 -2.8294 0.9476 12 8 0.8941 -2.3741 -0.1077 13 7 1.1090 -4.1355 1.2273 14 6 1.5342 -4.8140 2.4603 15 6 1.1424 -6.3005 2.3236 16 6 1.0274 -6.4897 0.7879 17 8 2.3108 -6.7186 0.2025 18 6 0.0760 -7.6089 0.4513 19 1 -0.4176 -8.1541 1.2421 20 6 -0.1642 -7.9367 -0.8662 21 7 0.4365 -7.2723 -1.8292 22 14 -1.3440 -9.3235 -1.2834 23 1 -2.6900 -9.0085 -0.7409 24 1 -1.4283 -9.4749 -2.7583 25 1 -0.8520 -10.5894 -0.6828 26 6 0.4478 -5.1189 0.3503 27 1 -0.3634 0.7133 0.7399 28 1 -0.3634 0.2841 -0.9876 29 1 -0.3634 -0.9973 0.2478 30 1 3.1309 1.2086 2.2748 31 1 3.7099 0.2529 4.4927 32 1 3.1451 -2.0945 4.9841 33 1 2.6140 -4.7247 2.5792 34 1 1.0289 -4.3727 3.3195 35 1 1.9208 -6.9437 2.7342 36 1 0.1856 -6.4933 2.8086 37 1 2.2892 -6.8430 -0.7563 38 1 0.2673 -7.5027 -2.7561 39 1 -0.6316 -5.0955 0.5003 40 1 0.6910 -4.9204 -0.6934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434123920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:30 Heat of formation + Delta-G solvation = -82.007030 kcal Electronic energy + Delta-G solvation = -28647.703876 eV Core-core repulsion = 24556.439113 eV Total energy + Delta-G solvation = -4091.264763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.82334 -39.09415 -37.56510 -36.59867 -35.63622 -34.46112 -32.93953 -32.16023 -31.88077 -30.23011 -29.21915 -27.88175 -25.87564 -24.41705 -24.10245 -22.44730 -19.99307 -19.59529 -18.96858 -17.68323 -17.45346 -17.13857 -16.70638 -15.93727 -15.80458 -15.56642 -15.36323 -15.08332 -14.71995 -14.41296 -14.01404 -13.76695 -13.52678 -13.29906 -13.05592 -12.88902 -12.87318 -12.44904 -12.09192 -11.85785 -11.68122 -11.64742 -11.49600 -11.22567 -11.04762 -10.84285 -10.69895 -10.58466 -10.51567 -10.39222 -10.19834 -10.00044 -9.66191 -9.51932 -9.36256 -8.69434 -8.41660 -7.85582 -6.30107 -4.40527 0.06024 0.36771 0.74169 2.72543 2.96180 3.17339 3.22712 3.27322 3.29078 3.58689 3.93590 3.99883 4.24618 4.30678 4.48926 4.59229 4.69968 4.94606 4.96608 4.99805 5.06970 5.30983 5.47085 5.51647 5.61798 5.78857 5.87324 5.94290 6.06270 6.13776 6.34033 6.51616 6.71831 6.80192 6.85809 7.20476 7.31116 7.39523 7.72780 7.96116 8.00357 8.35857 8.62990 9.29605 9.46472 10.77001 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.003830 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.904478 B = 7308.757779 C = 8379.414819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.516 3.484 3 O -0.961 6.961 4 O -0.900 6.900 5 C -0.672 4.672 6 C 0.012 3.988 7 C -0.180 4.180 8 C 0.142 3.858 9 N -0.462 5.462 10 C 0.188 3.812 11 C 0.548 3.452 12 O -0.526 6.526 13 N -0.569 5.569 14 C 0.117 3.883 15 C -0.124 4.124 16 C 0.250 3.750 17 O -0.583 6.583 18 C -0.540 4.540 19 H 0.067 0.933 20 C 0.072 3.928 21 N -0.893 5.893 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.087 3.913 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.387 0.613 38 H 0.273 0.727 39 H 0.068 0.932 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 14.274 11.328 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.692 3.308 3 O -0.958 6.958 4 O -0.897 6.897 5 C -0.757 4.757 6 C -0.014 4.014 7 C -0.201 4.201 8 C -0.015 4.015 9 N -0.174 5.174 10 C 0.047 3.953 11 C 0.333 3.667 12 O -0.407 6.407 13 N -0.297 5.297 14 C -0.006 4.006 15 C -0.162 4.162 16 C 0.209 3.791 17 O -0.393 6.393 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.034 4.034 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.166 0.834 32 H 0.187 0.813 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.874 13.969 10.755 17.729 hybrid contribution -0.940 -0.161 -0.125 0.962 sum 0.934 13.808 10.630 17.451 Atomic orbital electron populations 1.30345 1.24561 1.12979 1.10939 1.04949 0.78463 0.73656 0.73779 1.93521 1.78653 1.37664 1.86005 1.93677 1.77160 1.59840 1.59057 1.31867 1.14279 1.03631 1.25968 1.21451 0.88995 0.99794 0.91147 1.22452 1.02019 0.97451 0.98134 1.23249 0.89880 0.90411 0.98009 1.68067 1.10913 1.36963 1.01409 1.21086 0.92274 0.90065 0.91836 1.17574 0.81447 0.82225 0.85447 1.90771 1.52299 1.73425 1.24181 1.48523 1.53860 1.06790 1.20566 1.22144 0.99860 0.92814 0.85734 1.22741 1.01468 0.93438 0.98518 1.19618 0.82391 0.89612 0.87457 1.86081 1.30654 1.94406 1.28196 1.21458 1.26439 1.17320 0.92582 0.91442 1.25089 0.95599 0.96309 0.96188 1.69556 1.42830 1.40395 1.00465 0.86442 0.80986 0.82005 0.77346 1.20030 1.21043 1.19986 1.23591 0.96088 0.88316 0.95405 0.86689 0.85209 0.83097 0.82184 0.83424 0.81316 0.91495 0.91394 0.90639 0.90512 0.76075 0.91692 0.91371 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.49 10.07 101.05 1.02 -6.47 16 2 S 2.52 36.92 5.14 -107.50 -0.55 36.37 16 3 O -0.96 -14.40 16.83 -57.54 -0.97 -15.36 16 4 O -0.90 -17.75 14.88 -67.46 -1.00 -18.76 16 5 C -0.67 -9.45 5.63 -39.05 -0.22 -9.67 16 6 C 0.01 0.13 9.61 -39.31 -0.38 -0.25 16 7 C -0.18 -1.54 10.11 -39.32 -0.40 -1.94 16 8 C 0.14 1.41 11.18 -17.56 -0.20 1.22 16 9 N -0.46 -6.54 6.89 -9.80 -0.07 -6.61 16 10 C 0.19 3.06 6.70 -83.01 -0.56 2.50 16 11 C 0.55 10.80 7.45 -12.18 -0.09 10.71 16 12 O -0.53 -10.98 9.31 -19.67 -0.18 -11.16 16 13 N -0.57 -11.73 3.32 -171.37 -0.57 -12.30 16 14 C 0.12 2.12 5.40 -3.06 -0.02 2.11 16 15 C -0.12 -2.43 6.12 -24.89 -0.15 -2.59 16 16 C 0.25 5.99 0.89 -89.50 -0.08 5.91 16 17 O -0.58 -15.12 13.19 -35.23 -0.46 -15.59 16 18 C -0.54 -13.75 8.25 -34.44 -0.28 -14.04 16 19 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 21 N -0.89 -23.60 10.72 55.43 0.59 -23.01 16 22 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.09 2.03 5.65 -2.41 -0.01 2.02 16 27 H 0.11 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.15 2.07 5.54 -51.92 -0.29 1.78 16 30 H 0.16 1.38 7.32 -52.48 -0.38 0.99 16 31 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.07 1.22 7.57 -51.93 -0.39 0.83 16 34 H 0.07 1.07 7.39 -51.92 -0.38 0.69 16 35 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 36 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 37 H 0.39 10.40 6.93 45.56 0.32 10.72 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 1.58 8.04 -51.93 -0.42 1.16 16 40 H 0.09 2.38 7.64 -51.93 -0.40 1.98 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -33.32 338.57 -8.62 -41.94 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.02 Total: 13.16 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.46 Total: -8.75 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.04 Total: -41.92 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -2.62 Total: -60.87 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 36.92 SS G_CDS: -0.55 Total: 36.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.32 -8.62 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434123920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.070 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds