Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42098 * 110.54510 * 2 1 4 4 O 1.42098 * 110.54401 * 223.24642 * 2 1 3 5 5 C 1.76204 * 104.44979 * 111.62424 * 2 1 3 6 6 C 1.38347 * 119.45775 * 89.99600 * 5 2 1 7 7 C 1.38364 * 119.30109 * 180.02562 * 6 5 2 8 8 C 1.40018 * 118.28889 * 359.97438 * 7 6 5 9 9 C 1.47834 * 120.56131 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00528 * 205.75558 * 9 8 7 11 11 N 1.34782 * 120.00047 * 25.74817 * 9 8 7 12 12 C 1.47423 * 125.64747 * 356.38622 * 11 9 8 13 13 C 1.54906 * 104.83286 * 155.90459 * 12 11 9 14 14 C 1.55155 * 101.58256 * 37.00601 * 13 12 11 15 15 O 1.42899 * 110.71956 * 83.03811 * 14 13 12 16 16 C 1.50702 * 110.72041 * 206.13349 * 14 13 12 17 17 H 1.08002 * 119.99899 * 357.56312 * 16 14 13 18 18 C 1.37874 * 120.00303 * 177.28141 * 16 14 13 19 19 N 1.31520 * 119.99588 * 0.27941 * 18 16 14 20 20 Si 1.86798 * 120.00288 * 180.27492 * 18 16 14 21 21 H 1.48497 * 109.46956 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46958 * 120.00114 * 20 18 16 23 23 H 1.48501 * 109.47131 * 240.00222 * 20 18 16 24 24 C 1.47318 * 125.61574 * 176.59856 * 11 9 8 25 25 C 1.39520 * 118.88221 * 0.27717 * 8 7 6 26 26 N 1.31701 * 120.56688 * 359.44992 * 25 8 7 27 27 H 1.08998 * 109.47144 * 308.37527 * 1 2 3 28 28 H 1.09001 * 109.46681 * 68.37396 * 1 2 3 29 29 H 1.08992 * 109.47215 * 188.37062 * 1 2 3 30 30 H 1.07998 * 120.35565 * 359.97438 * 6 5 2 31 31 H 1.08002 * 120.85402 * 180.02562 * 7 6 5 32 32 H 1.08996 * 110.36772 * 37.06095 * 12 11 9 33 33 H 1.09004 * 110.35856 * 274.74237 * 12 11 9 34 34 H 1.08998 * 111.00438 * 278.92570 * 13 12 11 35 35 H 1.09005 * 111.03470 * 155.09718 * 13 12 11 36 36 H 0.96699 * 113.99909 * 182.43406 * 15 14 13 37 37 H 0.96994 * 119.99640 * 179.97438 * 19 18 16 38 38 H 1.08999 * 110.05995 * 61.68793 * 24 11 9 39 39 H 1.08998 * 109.85519 * 300.42529 * 24 11 9 40 40 H 1.08003 * 119.71910 * 179.72736 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4234 -1.9914 1.7548 7 6 2.7681 -2.4817 3.0019 8 6 2.9329 -1.5695 4.0512 9 6 3.3015 -2.0383 5.4039 10 8 3.0002 -1.3782 6.3791 11 7 3.9716 -3.1978 5.5560 12 6 4.3322 -4.1302 4.4725 13 6 5.5551 -4.9125 5.0131 14 6 5.1874 -5.0679 6.5124 15 8 4.3156 -6.1835 6.7062 16 6 6.4294 -5.2118 7.3538 17 1 7.4009 -5.2365 6.8827 18 6 6.3258 -5.3060 8.7254 19 7 5.1427 -5.2759 9.2991 20 14 7.8658 -5.4767 9.7689 21 1 9.0617 -5.4846 8.8886 22 1 7.9536 -4.3333 10.7122 23 1 7.8061 -6.7473 10.5352 24 6 4.4608 -3.7449 6.8334 25 6 2.7383 -0.2109 3.7999 26 7 2.4157 0.2075 2.5936 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9554 29 1 -0.3633 -1.0166 0.1496 30 1 2.2874 -2.6655 0.9220 31 1 2.9073 -3.5408 3.1616 32 1 4.6024 -3.5789 3.5719 33 1 3.5063 -4.8115 4.2678 34 1 6.4720 -4.3355 4.8933 35 1 5.6422 -5.8854 4.5292 36 1 4.0261 -6.3020 7.6212 37 1 5.0699 -5.3425 10.2640 38 1 3.6228 -3.9354 7.5038 39 1 5.1553 -3.0430 7.2949 40 1 2.8576 0.5041 4.6005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452241944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -94.848999 kcal Electronic energy + Delta-G solvation = -27276.437712 eV Core-core repulsion = 23184.616080 eV Total energy + Delta-G solvation = -4091.821632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87526 -39.19951 -37.45194 -37.39526 -36.28323 -34.71350 -32.99639 -32.31810 -31.97043 -30.23953 -29.94265 -28.12146 -26.00388 -24.84590 -23.82835 -22.76837 -20.08957 -19.66014 -19.58932 -18.19272 -17.47280 -17.23764 -16.87063 -16.62704 -15.85126 -15.70388 -15.31475 -15.08382 -15.05732 -14.44867 -14.22497 -14.01413 -13.68089 -13.62558 -13.41894 -13.25998 -13.07636 -12.93022 -12.42651 -12.31649 -12.28250 -11.76830 -11.67273 -11.63403 -11.34749 -11.16875 -10.96162 -10.86972 -10.56279 -10.39688 -10.22929 -10.18883 -9.82088 -9.58086 -9.46636 -8.78814 -8.46817 -8.19386 -6.40318 -4.49101 -0.42523 0.04241 0.81248 2.34746 2.65074 3.12068 3.18066 3.23264 3.26286 3.35938 3.58782 3.63337 4.13235 4.18231 4.33619 4.37413 4.45835 4.54350 4.69521 4.78150 4.87959 5.11228 5.18762 5.20434 5.41624 5.45150 5.56911 5.65768 5.75622 5.91862 6.11217 6.29394 6.56982 6.64961 6.68246 7.08292 7.19184 7.23772 7.62023 7.82178 7.89756 8.31627 8.55051 9.17596 9.27249 10.67615 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028233 B = 0.002507 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.514511 B =11167.293686 C =11464.233094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.510 3.490 3 O -0.914 6.914 4 O -0.930 6.930 5 C -0.425 4.425 6 C -0.093 4.093 7 C -0.075 4.075 8 C -0.114 4.114 9 C 0.558 3.442 10 O -0.534 6.534 11 N -0.598 5.598 12 C 0.087 3.913 13 C -0.118 4.118 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.539 4.539 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.102 3.898 25 C 0.134 3.866 26 N -0.397 5.397 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.385 0.615 37 H 0.271 0.729 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 5.701 -16.483 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.685 3.315 3 O -0.911 6.911 4 O -0.927 6.927 5 C -0.644 4.644 6 C -0.114 4.114 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.344 3.656 10 O -0.413 6.413 11 N -0.329 5.329 12 C -0.036 4.036 13 C -0.156 4.156 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.019 4.019 25 C -0.028 4.028 26 N -0.105 5.105 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.286 7.160 -17.196 20.814 hybrid contribution 0.354 -1.265 2.276 2.628 sum -8.931 5.896 -14.920 18.362 Atomic orbital electron populations 1.30172 1.24835 1.12302 1.12313 1.05372 0.78232 0.74794 0.73102 1.93610 1.76939 1.35641 1.84949 1.93622 1.77745 1.62223 1.59079 1.33377 1.11555 0.99460 1.19985 1.21989 0.95564 0.95040 0.98851 1.22627 0.93740 1.02125 0.91663 1.21517 0.98997 0.96080 0.95334 1.17638 0.79418 0.81017 0.87543 1.90803 1.54725 1.55839 1.39915 1.48842 1.53311 1.19026 1.11760 1.22783 0.98775 0.91803 0.90201 1.22796 0.95769 0.99642 0.97395 1.19498 0.87805 0.81757 0.90152 1.86087 1.68108 1.50566 1.34702 1.21532 0.92820 1.51860 0.91466 0.91347 1.25084 0.96858 0.93287 0.98069 1.69639 1.22747 1.49475 1.11514 0.86318 0.82557 0.77899 0.79989 1.19544 1.20713 1.20660 1.23245 0.98645 0.97620 0.82419 1.23259 0.92158 0.93317 0.94089 1.67867 1.07527 1.36323 0.98816 0.84538 0.84550 0.84870 0.82166 0.81702 0.91213 0.90850 0.90210 0.90078 0.76332 0.91886 0.91065 0.91006 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.50 10.80 101.05 1.09 -1.41 16 2 S 2.51 21.18 5.86 -107.50 -0.63 20.55 16 3 O -0.91 -11.33 17.72 -57.54 -1.02 -12.35 16 4 O -0.93 -9.69 17.09 -57.54 -0.98 -10.68 16 5 C -0.43 -4.63 6.53 -17.47 -0.11 -4.74 16 6 C -0.09 -0.92 9.49 -39.49 -0.37 -1.30 16 7 C -0.07 -0.87 8.07 -38.87 -0.31 -1.18 16 8 C -0.11 -1.65 5.73 -104.83 -0.60 -2.25 16 9 C 0.56 10.23 7.67 -12.33 -0.09 10.14 16 10 O -0.53 -11.54 16.98 5.32 0.09 -11.45 16 11 N -0.60 -11.21 3.33 -171.40 -0.57 -11.78 16 12 C 0.09 1.34 5.02 -2.53 -0.01 1.33 16 13 C -0.12 -2.14 6.23 -24.59 -0.15 -2.29 16 14 C 0.25 5.59 0.85 -89.94 -0.08 5.51 16 15 O -0.59 -13.73 13.08 -35.23 -0.46 -14.19 16 16 C -0.54 -13.37 8.11 -34.44 -0.28 -13.65 16 17 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 18 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 19 N -0.89 -22.80 10.96 55.43 0.61 -22.20 16 20 Si 0.91 19.79 29.54 -169.99 -5.02 14.76 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.10 2.28 5.39 -2.90 -0.02 2.27 16 25 C 0.13 1.85 10.76 -17.13 -0.18 1.67 16 26 N -0.40 -5.20 10.02 -12.11 -0.12 -5.32 16 27 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 29 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.16 1.08 7.55 -52.49 -0.40 0.68 16 31 H 0.17 1.68 4.55 -52.49 -0.24 1.44 16 32 H 0.07 0.88 6.08 -51.93 -0.32 0.57 16 33 H 0.07 1.04 7.34 -51.93 -0.38 0.66 16 34 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.39 9.38 7.24 45.56 0.33 9.71 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.07 1.75 8.00 -51.93 -0.42 1.34 16 39 H 0.07 1.77 7.81 -51.93 -0.41 1.36 16 40 H 0.18 2.32 7.87 -52.48 -0.41 1.91 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -33.76 348.95 -7.96 -41.72 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.89 Total: 9.92 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.22 Total: -4.24 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.08 Total: -39.30 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.37 Total: -48.67 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -0.63 Total: 20.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.76 -7.96 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452241944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.129 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds