Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.57688 * 2 1 4 4 O 1.42099 * 108.58175 * 228.97725 * 2 1 3 5 5 C 1.81404 * 101.92000 * 114.48823 * 2 1 3 6 6 C 1.50699 * 109.46969 * 180.02562 * 5 2 1 7 7 O 1.21284 * 120.00321 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99903 * 180.02562 * 6 5 2 9 9 N 1.40099 * 119.99929 * 179.97438 * 8 6 5 10 10 C 1.34783 * 120.00093 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99858 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00304 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.47197 * 310.21351 * 12 10 9 14 14 C 1.50699 * 109.46904 * 70.20771 * 12 10 9 15 15 H 1.08001 * 120.00018 * 54.88218 * 14 12 10 16 16 C 1.37876 * 119.99907 * 234.60761 * 14 12 10 17 17 N 1.31516 * 119.99806 * 176.90575 * 16 14 12 18 18 Si 1.86796 * 120.00265 * 356.90577 * 16 14 12 19 19 H 1.48493 * 109.47284 * 84.47010 * 18 16 14 20 20 H 1.48504 * 109.47278 * 204.47095 * 18 16 14 21 21 H 1.48503 * 109.46787 * 324.46981 * 18 16 14 22 22 C 1.50700 * 109.47337 * 190.20811 * 12 10 9 23 23 C 1.38237 * 119.99910 * 291.60348 * 22 12 10 24 24 C 1.38229 * 119.99632 * 179.80836 * 23 22 12 25 25 C 1.38232 * 120.00449 * 0.39777 * 24 23 22 26 26 C 1.38241 * 119.99673 * 359.85603 * 25 24 23 27 27 C 1.38231 * 120.00111 * 359.95081 * 26 25 24 28 28 H 1.08996 * 109.47648 * 305.51489 * 1 2 3 29 29 H 1.09004 * 109.47113 * 65.51311 * 1 2 3 30 30 H 1.09002 * 109.47313 * 185.50891 * 1 2 3 31 31 H 1.09001 * 109.46999 * 60.00142 * 5 2 1 32 32 H 1.08996 * 109.46829 * 300.00196 * 5 2 1 33 33 H 0.96999 * 120.00137 * 359.97438 * 8 6 5 34 34 H 0.96998 * 120.00482 * 359.97438 * 9 8 6 35 35 H 0.97005 * 120.00379 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.99999 * 359.97438 * 23 22 12 37 37 H 1.08001 * 120.00107 * 180.22929 * 24 23 22 38 38 H 1.08000 * 120.00401 * 179.83340 * 25 24 23 39 39 H 1.08001 * 119.99608 * 179.97438 * 26 25 24 40 40 H 1.08001 * 120.00212 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 6 3.6826 -0.8172 1.7957 7 8 4.4218 -0.4187 0.9206 8 7 4.1973 -1.3339 2.9291 9 7 5.5861 -1.4102 3.0966 10 6 6.1008 -1.9264 4.2303 11 8 5.3617 -2.3253 5.1052 12 6 7.5947 -2.0090 4.4103 13 1 8.0418 -2.4707 3.5299 14 6 8.1564 -0.6222 4.5901 15 1 7.7683 0.0213 5.3658 16 6 9.1696 -0.1768 3.7678 17 7 9.6180 1.0540 3.8845 18 14 9.9053 -1.3216 2.4882 19 1 9.0724 -1.2910 1.2593 20 1 11.2848 -0.8786 2.1624 21 1 9.9438 -2.7054 3.0258 22 6 7.9089 -2.8399 5.6277 23 6 7.5965 -2.3652 6.8879 24 6 7.8811 -3.1291 8.0042 25 6 8.4855 -4.3641 7.8610 26 6 8.8026 -4.8364 6.6011 27 6 8.5145 -4.0742 5.4845 28 1 -0.3634 0.5969 0.8364 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7370 1.6664 32 1 1.7609 -0.1171 2.4042 33 1 3.6061 -1.6530 3.6288 34 1 6.1773 -1.0914 2.3968 35 1 10.3312 1.3673 3.3062 36 1 7.1277 -1.3988 7.0000 37 1 7.6337 -2.7600 8.9886 38 1 8.7103 -4.9597 8.7334 39 1 9.2752 -5.8010 6.4893 40 1 8.7626 -4.4431 4.5002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470661058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -108.650440 kcal Electronic energy + Delta-G solvation = -26940.840114 eV Core-core repulsion = 22848.420006 eV Total energy + Delta-G solvation = -4092.420108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62894 -40.60843 -39.39066 -37.99436 -37.00244 -36.51490 -35.63012 -33.58528 -33.05989 -31.63005 -30.94092 -30.06037 -29.17468 -25.63766 -23.40620 -23.11057 -22.80265 -21.32602 -19.79974 -19.30562 -19.06458 -18.93756 -17.58956 -17.57126 -17.40308 -17.22040 -16.72785 -16.54516 -16.29319 -15.93088 -15.68085 -15.35060 -15.18403 -14.87102 -14.59200 -14.14866 -13.93661 -13.86866 -13.82203 -13.75103 -13.47431 -13.06185 -13.00438 -12.98264 -12.83353 -12.51883 -12.17234 -12.07487 -11.98025 -11.82443 -11.73014 -11.65529 -11.46295 -11.05164 -10.79544 -9.64312 -9.53836 -9.41134 -8.42219 -6.52157 -1.06346 0.53384 0.68044 0.88105 1.05447 1.32256 1.33677 1.41570 1.69612 1.82782 2.23641 2.55780 2.89375 3.08764 3.11444 3.16450 3.50692 3.94689 4.01842 4.11774 4.16763 4.18785 4.29083 4.33602 4.34818 4.40868 4.43367 4.82205 4.87904 5.03329 5.12853 5.31402 5.33035 5.49769 5.52498 5.70417 5.74640 5.90984 6.13328 6.27580 6.36172 6.51929 6.70953 7.12707 7.26199 8.72406 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003130 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.659136 B = 8943.654071 C =10108.487533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.436 3.564 3 O -0.985 6.985 4 O -0.981 6.981 5 C -0.636 4.636 6 C 0.522 3.478 7 O -0.582 6.582 8 N -0.502 5.502 9 N -0.531 5.531 10 C 0.534 3.466 11 O -0.568 6.568 12 C 0.042 3.958 13 H 0.078 0.922 14 C -0.510 4.510 15 H 0.042 0.958 16 C 0.035 3.965 17 N -0.925 5.925 18 Si 0.917 3.083 19 H -0.258 1.258 20 H -0.281 1.281 21 H -0.234 1.234 22 C -0.059 4.059 23 C -0.101 4.101 24 C -0.133 4.133 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.145 4.145 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.167 0.833 31 H 0.216 0.784 32 H 0.210 0.790 33 H 0.444 0.556 34 H 0.430 0.570 35 H 0.273 0.727 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 -10.049 -1.322 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.620 3.380 3 O -0.982 6.982 4 O -0.978 6.978 5 C -0.764 4.764 6 C 0.309 3.691 7 O -0.462 6.462 8 N -0.249 5.249 9 N -0.278 5.278 10 C 0.323 3.677 11 O -0.446 6.446 12 C 0.019 3.981 13 H 0.096 0.904 14 C -0.548 4.548 15 H 0.060 0.940 16 C -0.166 4.166 17 N -0.562 5.562 18 Si 0.739 3.261 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.157 1.157 22 C -0.060 4.060 23 C -0.119 4.119 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.163 4.163 28 H 0.182 0.818 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.233 0.767 32 H 0.228 0.772 33 H 0.288 0.712 34 H 0.272 0.728 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.100 -9.620 -1.996 20.594 hybrid contribution 0.351 0.317 0.001 0.473 sum -17.749 -9.303 -1.994 20.138 Atomic orbital electron populations 1.30059 1.18001 1.15043 1.14254 1.07292 0.80764 0.73986 0.75951 1.93544 1.81828 1.36667 1.86134 1.93531 1.81793 1.67823 1.54629 1.30882 0.95936 1.20821 1.28772 1.20447 0.90818 0.77081 0.80769 1.90905 1.62426 1.50148 1.42676 1.44781 0.96259 1.63171 1.20734 1.45255 0.95671 1.65299 1.21594 1.21833 0.92267 0.74378 0.79186 1.90568 1.61843 1.50479 1.41739 1.18245 0.87693 0.96569 0.95611 0.90421 1.20507 1.20035 0.96292 1.17924 0.94007 1.25828 0.96077 0.96119 0.98584 1.69973 1.28347 1.17693 1.40196 0.86160 0.78893 0.81139 0.79867 1.18249 1.20678 1.15676 1.19829 0.97569 0.93817 0.94746 1.20851 0.99209 0.98862 0.92969 1.21350 0.99872 0.95557 0.98282 1.21386 0.99379 0.95980 0.98195 1.21363 1.00213 1.00422 0.92105 1.21259 1.00938 0.94043 1.00034 0.81768 0.83908 0.81503 0.76701 0.77239 0.71196 0.72831 0.91811 0.89088 0.84691 0.83136 0.83269 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.14 10.62 113.37 1.20 0.07 16 2 S 2.44 42.20 4.60 -56.49 -0.26 41.94 16 3 O -0.98 -28.70 17.95 -125.74 -2.26 -30.96 16 4 O -0.98 -27.13 17.95 -125.76 -2.26 -29.38 16 5 C -0.64 -7.47 6.29 71.24 0.45 -7.02 16 6 C 0.52 15.01 7.97 87.66 0.70 15.71 16 7 O -0.58 -23.31 15.46 -0.18 0.00 -23.31 16 8 N -0.50 -15.19 6.26 -173.53 -1.09 -16.27 16 9 N -0.53 -20.90 6.26 -173.53 -1.09 -21.99 16 10 C 0.53 22.94 7.11 87.66 0.62 23.57 16 11 O -0.57 -24.91 15.20 -3.03 -0.05 -24.95 16 12 C 0.04 1.90 2.22 -13.03 -0.03 1.87 16 13 H 0.08 3.33 4.52 -2.39 -0.01 3.32 16 14 C -0.51 -27.49 8.23 25.60 0.21 -27.28 16 15 H 0.04 2.56 7.66 -2.91 -0.02 2.54 16 16 C 0.04 1.93 5.47 84.65 0.46 2.39 16 17 N -0.93 -55.17 13.96 21.45 0.30 -54.88 16 18 Si 0.92 40.78 26.97 68.60 1.85 42.63 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.23 -9.35 6.74 99.48 0.67 -8.68 16 22 C -0.06 -2.51 4.38 -19.87 -0.09 -2.59 16 23 C -0.10 -4.24 8.22 22.27 0.18 -4.06 16 24 C -0.13 -4.49 10.05 22.27 0.22 -4.27 16 25 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 26 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 27 C -0.14 -5.25 9.67 22.27 0.22 -5.04 16 28 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.17 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.22 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.21 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.44 10.59 8.00 -213.32 -1.71 8.88 16 34 H 0.43 18.00 8.00 -213.32 -1.71 16.29 16 35 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 36 H 0.09 4.21 7.51 -2.91 -0.02 4.19 16 37 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.12 4.07 7.96 -2.91 -0.02 4.04 16 Total: -1.00 -95.75 362.72 -2.59 -98.34 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -2.35 Total: 32.50 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.60 Total: -13.67 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -1.87 Total: -93.14 kcal Atomic # 8 Polarization: -104.04 SS G_CDS: -4.56 Total: -108.60 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.85 Total: 42.63 kcal Atomic # 16 Polarization: 42.20 SS G_CDS: -0.26 Total: 41.94 kcal Total: -95.75 -2.59 -98.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470661058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.313 kcal (2) G-P(sol) polarization free energy of solvation -95.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds