Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 110.54303 * 2 1 4 4 O 1.42098 * 110.54277 * 136.75322 * 2 1 3 5 5 C 1.76197 * 104.44851 * 248.37832 * 2 1 3 6 6 C 1.38137 * 120.03790 * 115.00266 * 5 2 1 7 7 C 1.38257 * 120.07166 * 180.02562 * 6 5 2 8 8 C 1.38304 * 120.14127 * 0.02562 * 7 6 5 9 9 C 1.38093 * 120.06999 * 0.02562 * 8 7 6 10 10 C 1.38848 * 120.03410 * 294.72739 * 5 2 1 11 11 N 1.39949 * 120.07187 * 359.97438 * 10 5 2 12 12 C 1.34773 * 119.99904 * 144.89193 * 11 10 5 13 13 O 1.21586 * 120.00192 * 4.55705 * 12 11 10 14 14 N 1.34781 * 119.99772 * 184.55733 * 12 11 10 15 15 C 1.47064 * 136.05758 * 359.63007 * 14 12 11 16 16 C 1.53234 * 88.08259 * 207.20179 * 15 14 12 17 17 O 1.42902 * 114.01450 * 87.72058 * 16 15 14 18 18 C 1.50698 * 114.50891 * 220.45448 * 16 15 14 19 19 H 1.08004 * 119.99877 * 93.84905 * 18 16 15 20 20 C 1.37878 * 120.00091 * 273.85335 * 18 16 15 21 21 N 1.31512 * 120.00124 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99777 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47029 * 89.99540 * 22 20 18 24 24 H 1.48502 * 109.46962 * 209.99579 * 22 20 18 25 25 H 1.48496 * 109.47110 * 329.99885 * 22 20 18 26 26 C 1.47065 * 136.05684 * 180.02562 * 14 12 11 27 27 H 1.08999 * 109.47192 * 51.61980 * 1 2 3 28 28 H 1.08997 * 109.47150 * 171.62428 * 1 2 3 29 29 H 1.09002 * 109.46626 * 291.62575 * 1 2 3 30 30 H 1.08003 * 119.96338 * 359.97438 * 6 5 2 31 31 H 1.08002 * 119.93058 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.96793 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.03795 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99592 * 324.89994 * 11 10 5 35 35 H 1.09000 * 113.46802 * 321.94306 * 15 14 12 36 36 H 1.09009 * 113.46350 * 92.37718 * 15 14 12 37 37 H 0.96699 * 114.00629 * 86.38448 * 17 16 15 38 38 H 0.97000 * 119.99867 * 180.02562 * 21 20 18 39 39 H 1.08998 * 113.46438 * 267.62639 * 26 14 12 40 40 H 1.09000 * 113.46914 * 38.06171 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.9156 0.1785 -2.4908 7 6 3.2605 -0.3139 -3.7358 8 6 2.9436 -1.6154 -4.0800 9 6 2.2810 -2.4272 -3.1806 10 6 1.9401 -1.9379 -1.9261 11 7 1.2751 -2.7604 -1.0097 12 6 0.3779 -3.6669 -1.4452 13 8 0.2066 -3.8281 -2.6381 14 7 -0.3294 -4.3947 -0.5584 15 6 -0.4052 -4.4968 0.9068 16 6 -0.8632 -5.9484 0.7305 17 8 0.2083 -6.8904 0.6488 18 6 -1.9615 -6.3758 1.6697 19 1 -2.9938 -6.3092 1.3592 20 6 -1.6486 -6.8518 2.9253 21 7 -0.3916 -6.9333 3.3032 22 14 -3.0102 -7.3809 4.0896 23 1 -3.3019 -8.8229 3.8873 24 1 -2.5776 -7.1554 5.4922 25 1 -4.2335 -6.5852 3.8148 26 6 -1.3601 -5.4413 -0.6301 27 1 -0.3633 0.6380 -0.8056 28 1 -0.3633 -1.0167 -0.1497 29 1 -0.3633 0.3788 0.9554 30 1 3.1634 1.1958 -2.2255 31 1 3.7776 0.3194 -4.4415 32 1 3.2147 -1.9973 -5.0531 33 1 2.0342 -3.4436 -3.4497 34 1 1.4599 -2.6778 -0.0610 35 1 0.5630 -4.4051 1.3990 36 1 -1.1656 -3.8522 1.3480 37 1 0.5193 -7.2080 1.5075 38 1 -0.1715 -7.2685 4.1864 39 1 -2.3775 -5.0512 -0.6027 40 1 -1.2021 -6.1513 -1.4419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649891922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -63.269716 kcal Electronic energy + Delta-G solvation = -27997.648541 eV Core-core repulsion = 23907.196289 eV Total energy + Delta-G solvation = -4090.452252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67574 -39.22226 -37.77529 -37.26368 -36.12591 -34.66904 -34.14563 -32.26264 -31.36377 -30.23812 -29.68465 -28.20161 -25.45022 -25.25300 -23.49103 -22.83163 -20.64117 -19.46729 -19.05135 -18.17708 -17.76746 -17.25139 -16.91929 -16.38690 -16.07992 -15.49968 -15.41792 -15.18005 -14.89482 -14.51998 -14.17126 -14.01653 -13.73052 -13.47894 -13.37366 -13.00936 -12.78471 -12.74515 -12.58925 -12.24509 -12.14373 -12.12362 -11.79375 -11.63366 -11.29041 -11.13315 -11.09713 -10.89524 -10.54863 -10.44876 -10.34442 -9.99359 -9.47127 -9.36984 -8.85979 -8.58830 -8.39078 -7.95381 -6.47273 -4.58574 -0.12570 0.72186 1.23398 2.54594 2.71335 3.10647 3.19193 3.20473 3.22503 3.43838 3.71807 3.98564 4.05272 4.14991 4.58867 4.59352 4.76241 4.84911 4.85511 5.08271 5.29613 5.39276 5.43378 5.48124 5.65318 5.76925 5.94098 6.01552 6.04620 6.22460 6.28502 6.30502 6.37503 6.40526 6.56854 6.85690 6.96766 7.28090 7.55930 7.71152 8.33788 8.45572 8.71376 9.13372 9.41235 10.59588 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.003435 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.635171 B = 8150.391522 C = 9189.773072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.499 3.501 3 O -0.940 6.940 4 O -0.937 6.937 5 C -0.696 4.696 6 C -0.007 4.007 7 C -0.165 4.165 8 C -0.048 4.048 9 C -0.142 4.142 10 C 0.274 3.726 11 N -0.705 5.705 12 C 0.728 3.272 13 O -0.584 6.584 14 N -0.648 5.648 15 C 0.063 3.937 16 C 0.243 3.757 17 O -0.571 6.571 18 C -0.536 4.536 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.910 3.090 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.129 3.871 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.419 0.581 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.088 0.912 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 13.368 -7.344 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.679 3.321 3 O -0.937 6.937 4 O -0.934 6.934 5 C -0.787 4.787 6 C -0.026 4.026 7 C -0.184 4.184 8 C -0.067 4.067 9 C -0.163 4.163 10 C 0.174 3.826 11 N -0.356 5.356 12 C 0.432 3.568 13 O -0.463 6.463 14 N -0.384 5.384 15 C -0.060 4.060 16 C 0.201 3.799 17 O -0.384 6.384 18 C -0.574 4.574 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.195 1.195 26 C 0.006 3.994 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.667 13.573 -8.085 16.219 hybrid contribution -0.877 -0.555 1.017 1.454 sum 2.790 13.018 -7.068 15.073 Atomic orbital electron populations 1.30211 1.25186 1.12424 1.12134 1.05127 0.77987 0.74720 0.74266 1.93547 1.77637 1.36356 1.86139 1.93576 1.77363 1.61266 1.61209 1.30065 1.21459 1.01873 1.25269 1.20725 0.91474 0.98665 0.91728 1.21202 1.03686 0.96485 0.97075 1.21389 0.93127 0.93382 0.98762 1.21565 0.99149 1.02372 0.93188 1.16986 0.88486 0.86820 0.90270 1.43368 1.42582 1.38489 1.11168 1.15207 0.78911 0.78229 0.84466 1.90863 1.71281 1.70359 1.13785 1.48904 1.40639 1.39920 1.08895 1.24332 1.01324 1.02669 0.77651 1.19454 0.86249 0.84296 0.89926 1.86048 1.52907 1.61465 1.38002 1.21387 0.93130 1.44490 0.98432 0.90794 1.25088 0.96239 0.93740 0.97938 1.69255 1.17045 1.45814 1.21454 0.86290 0.81348 0.79234 0.79406 1.20195 1.20863 1.19529 1.23316 0.90114 0.85927 1.00012 0.84671 0.85152 0.84546 0.83632 0.85161 0.85048 0.82979 0.74049 0.91374 0.89768 0.74810 0.91414 0.89425 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.86 10.72 101.05 1.08 -4.78 16 2 S 2.50 29.74 5.31 -107.50 -0.57 29.17 16 3 O -0.94 -12.50 16.74 -57.54 -0.96 -13.47 16 4 O -0.94 -14.11 15.87 -57.54 -0.91 -15.02 16 5 C -0.70 -9.02 5.60 -39.39 -0.22 -9.24 16 6 C -0.01 -0.07 9.50 -39.61 -0.38 -0.45 16 7 C -0.16 -1.68 10.04 -39.55 -0.40 -2.08 16 8 C -0.05 -0.54 10.04 -39.61 -0.40 -0.94 16 9 C -0.14 -2.10 8.70 -39.39 -0.34 -2.44 16 10 C 0.27 4.16 6.25 -83.68 -0.52 3.64 16 11 N -0.70 -11.73 4.08 -14.22 -0.06 -11.79 16 12 C 0.73 14.18 8.64 -86.92 -0.75 13.42 16 13 O -0.58 -12.41 14.53 5.29 0.08 -12.34 16 14 N -0.65 -12.94 3.69 -191.21 -0.71 -13.64 16 15 C 0.06 1.28 7.70 -8.65 -0.07 1.22 16 16 C 0.24 5.55 1.57 -91.41 -0.14 5.41 16 17 O -0.57 -14.27 13.53 -35.23 -0.48 -14.75 16 18 C -0.54 -12.77 8.70 -34.44 -0.30 -13.07 16 19 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 21 N -0.90 -22.02 11.01 55.43 0.61 -21.41 16 22 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C 0.13 2.62 8.03 -8.53 -0.07 2.56 16 27 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.13 1.34 7.28 -51.93 -0.38 0.96 16 29 H 0.14 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.15 1.38 7.21 -52.48 -0.38 1.00 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 2.52 6.20 -52.49 -0.33 2.19 16 34 H 0.42 6.76 6.11 -40.82 -0.25 6.51 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.57 8.10 -51.92 -0.42 1.15 16 37 H 0.40 10.04 6.32 45.56 0.29 10.33 16 38 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -30.94 350.63 -9.30 -40.24 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -3.97 Total: 19.13 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.60 Total: -5.11 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.15 Total: -46.84 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -2.28 Total: -55.57 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 29.74 SS G_CDS: -0.57 Total: 29.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.94 -9.30 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649891922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.028 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds