Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 110.54303 * 2 1 4 4 O 1.42098 * 110.54277 * 136.75322 * 2 1 3 5 5 C 1.76197 * 104.44851 * 248.37832 * 2 1 3 6 6 C 1.38137 * 120.03790 * 115.00266 * 5 2 1 7 7 C 1.38257 * 120.07166 * 180.02562 * 6 5 2 8 8 C 1.38304 * 120.14127 * 0.02562 * 7 6 5 9 9 C 1.38093 * 120.06999 * 0.02562 * 8 7 6 10 10 C 1.38848 * 120.03410 * 294.72739 * 5 2 1 11 11 N 1.39949 * 120.07187 * 359.97438 * 10 5 2 12 12 C 1.34773 * 119.99904 * 144.89193 * 11 10 5 13 13 O 1.21586 * 120.00192 * 4.55705 * 12 11 10 14 14 N 1.34781 * 119.99772 * 184.55733 * 12 11 10 15 15 C 1.47064 * 136.05758 * 359.63007 * 14 12 11 16 16 C 1.53234 * 88.08259 * 207.20179 * 15 14 12 17 17 O 1.42902 * 114.01450 * 87.72058 * 16 15 14 18 18 C 1.50698 * 114.50891 * 220.45448 * 16 15 14 19 19 H 1.08004 * 119.99877 * 93.84905 * 18 16 15 20 20 C 1.37878 * 120.00091 * 273.85335 * 18 16 15 21 21 N 1.31512 * 120.00124 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99777 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47029 * 89.99540 * 22 20 18 24 24 H 1.48502 * 109.46962 * 209.99579 * 22 20 18 25 25 H 1.48496 * 109.47110 * 329.99885 * 22 20 18 26 26 C 1.47065 * 136.05684 * 180.02562 * 14 12 11 27 27 H 1.08999 * 109.47192 * 51.61980 * 1 2 3 28 28 H 1.08997 * 109.47150 * 171.62428 * 1 2 3 29 29 H 1.09002 * 109.46626 * 291.62575 * 1 2 3 30 30 H 1.08003 * 119.96338 * 359.97438 * 6 5 2 31 31 H 1.08002 * 119.93058 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.96793 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.03795 * 180.02562 * 9 8 7 34 34 H 0.97003 * 119.99592 * 324.89994 * 11 10 5 35 35 H 1.09000 * 113.46802 * 321.94306 * 15 14 12 36 36 H 1.09009 * 113.46350 * 92.37718 * 15 14 12 37 37 H 0.96699 * 114.00629 * 86.38448 * 17 16 15 38 38 H 0.97000 * 119.99867 * 180.02562 * 21 20 18 39 39 H 1.08998 * 113.46438 * 267.62639 * 26 14 12 40 40 H 1.09000 * 113.46914 * 38.06171 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.9156 0.1785 -2.4908 7 6 3.2605 -0.3139 -3.7358 8 6 2.9436 -1.6154 -4.0800 9 6 2.2810 -2.4272 -3.1806 10 6 1.9401 -1.9379 -1.9261 11 7 1.2751 -2.7604 -1.0097 12 6 0.3779 -3.6669 -1.4452 13 8 0.2066 -3.8281 -2.6381 14 7 -0.3294 -4.3947 -0.5584 15 6 -0.4052 -4.4968 0.9068 16 6 -0.8632 -5.9484 0.7305 17 8 0.2083 -6.8904 0.6488 18 6 -1.9615 -6.3758 1.6697 19 1 -2.9938 -6.3092 1.3592 20 6 -1.6486 -6.8518 2.9253 21 7 -0.3916 -6.9333 3.3032 22 14 -3.0102 -7.3809 4.0896 23 1 -3.3019 -8.8229 3.8873 24 1 -2.5776 -7.1554 5.4922 25 1 -4.2335 -6.5852 3.8148 26 6 -1.3601 -5.4413 -0.6301 27 1 -0.3633 0.6380 -0.8056 28 1 -0.3633 -1.0167 -0.1497 29 1 -0.3633 0.3788 0.9554 30 1 3.1634 1.1958 -2.2255 31 1 3.7776 0.3194 -4.4415 32 1 3.2147 -1.9973 -5.0531 33 1 2.0342 -3.4436 -3.4497 34 1 1.4599 -2.6778 -0.0610 35 1 0.5630 -4.4051 1.3990 36 1 -1.1656 -3.8522 1.3480 37 1 0.5193 -7.2080 1.5075 38 1 -0.1715 -7.2685 4.1864 39 1 -2.3775 -5.0512 -0.6027 40 1 -1.2021 -6.1513 -1.4419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649891922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -86.949060 kcal Electronic energy + Delta-G solvation = -27998.675354 eV Core-core repulsion = 23907.196289 eV Total energy + Delta-G solvation = -4091.479065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04803 -40.58733 -39.13770 -38.33557 -37.14458 -35.96545 -35.92868 -34.12269 -32.32889 -31.51866 -30.44988 -29.67318 -27.15355 -26.88270 -24.48094 -23.97553 -22.14267 -20.79744 -20.27546 -19.55719 -19.17522 -18.58952 -18.21046 -17.35734 -17.16689 -17.10859 -16.89377 -16.60484 -16.00728 -15.85778 -15.59050 -15.26343 -15.08471 -14.56814 -14.39352 -14.27236 -14.11165 -14.02102 -13.76070 -13.54372 -13.40897 -13.27309 -13.14467 -12.82742 -12.79199 -12.74191 -12.24713 -12.20917 -12.17264 -11.92729 -11.68957 -11.40106 -11.11071 -10.67624 -10.39511 -10.30983 -9.80200 -9.31979 -8.27285 -6.44831 -1.02171 -0.25489 0.23109 1.19592 1.48728 1.52777 1.61364 1.75252 1.83327 2.39549 2.41175 2.63626 2.78147 2.96611 3.08242 3.67155 3.71043 3.93665 3.95542 4.04899 4.07407 4.20648 4.32400 4.38424 4.41957 4.58682 4.62246 4.77140 4.77710 4.80513 4.88519 4.97834 5.13900 5.20722 5.26158 5.39318 5.73162 5.82208 5.87757 5.94370 6.62393 6.79519 7.20737 7.30035 7.47447 8.78983 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.003435 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.635171 B = 8150.391522 C = 9189.773072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.505 3.495 3 O -0.955 6.955 4 O -0.976 6.976 5 C -0.696 4.696 6 C -0.011 4.011 7 C -0.150 4.150 8 C -0.044 4.044 9 C -0.166 4.166 10 C 0.240 3.760 11 N -0.698 5.698 12 C 0.727 3.273 13 O -0.606 6.606 14 N -0.651 5.651 15 C 0.076 3.924 16 C 0.219 3.781 17 O -0.587 6.587 18 C -0.550 4.550 19 H 0.081 0.919 20 C 0.032 3.968 21 N -0.919 5.919 22 Si 0.972 3.028 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.262 1.262 26 C 0.133 3.867 27 H 0.161 0.839 28 H 0.120 0.880 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.126 0.874 34 H 0.419 0.581 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.389 0.611 38 H 0.276 0.724 39 H 0.113 0.887 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 15.578 -7.976 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.688 3.312 3 O -0.952 6.952 4 O -0.973 6.973 5 C -0.786 4.786 6 C -0.030 4.030 7 C -0.169 4.169 8 C -0.063 4.063 9 C -0.188 4.188 10 C 0.143 3.857 11 N -0.349 5.349 12 C 0.431 3.569 13 O -0.486 6.486 14 N -0.387 5.387 15 C -0.047 4.047 16 C 0.177 3.823 17 O -0.401 6.401 18 C -0.588 4.588 19 H 0.099 0.901 20 C -0.169 4.169 21 N -0.559 5.559 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.186 1.186 26 C 0.010 3.990 27 H 0.180 0.820 28 H 0.139 0.861 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.144 0.856 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.062 15.815 -8.742 18.328 hybrid contribution -0.619 -1.168 1.110 1.726 sum 2.443 14.647 -7.632 16.696 Atomic orbital electron populations 1.30115 1.21188 1.12680 1.14867 1.04846 0.79354 0.73664 0.73369 1.93521 1.79005 1.36531 1.86140 1.93528 1.79227 1.62206 1.62346 1.30198 1.21414 1.01097 1.25917 1.21167 0.90558 0.99429 0.91891 1.21683 1.01974 0.96109 0.97157 1.21729 0.91733 0.93583 0.99212 1.21539 1.01038 1.02010 0.94173 1.17204 0.90341 0.87690 0.90479 1.43191 1.42138 1.38152 1.11456 1.15289 0.79095 0.78480 0.84026 1.90842 1.72031 1.71186 1.14576 1.48830 1.40929 1.40230 1.08692 1.24151 1.01182 1.01391 0.77951 1.19779 0.85969 0.85015 0.91512 1.86034 1.53833 1.62415 1.37770 1.21652 0.93616 1.44710 0.98791 0.90130 1.25792 0.98036 0.93776 0.99287 1.69333 1.18467 1.46395 1.21742 0.85338 0.79156 0.78482 0.77354 1.20561 1.20941 1.18598 1.23312 0.91409 0.86004 0.98255 0.82048 0.86100 0.81864 0.81514 0.81096 0.82190 0.85605 0.73994 0.92463 0.87829 0.75478 0.91389 0.86957 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -10.05 10.72 113.37 1.21 -8.84 16 2 S 2.50 57.15 5.31 -56.49 -0.30 56.85 16 3 O -0.95 -23.91 16.74 -127.65 -2.14 -26.04 16 4 O -0.98 -29.68 15.87 -127.65 -2.03 -31.70 16 5 C -0.70 -17.32 5.60 22.39 0.13 -17.20 16 6 C -0.01 -0.23 9.50 22.25 0.21 -0.02 16 7 C -0.15 -2.56 10.04 22.29 0.22 -2.33 16 8 C -0.04 -0.92 10.04 22.25 0.22 -0.69 16 9 C -0.17 -4.95 8.70 22.39 0.19 -4.75 16 10 C 0.24 7.33 6.25 38.15 0.24 7.57 16 11 N -0.70 -23.72 4.08 -317.17 -1.29 -25.02 16 12 C 0.73 28.89 8.64 179.05 1.55 30.43 16 13 O -0.61 -26.39 14.53 -3.99 -0.06 -26.45 16 14 N -0.65 -26.25 3.69 -877.61 -3.24 -29.50 16 15 C 0.08 3.11 7.70 83.09 0.64 3.75 16 16 C 0.22 10.11 1.57 -11.30 -0.02 10.09 16 17 O -0.59 -30.29 13.53 -148.98 -2.02 -32.30 16 18 C -0.55 -26.04 8.70 25.60 0.22 -25.82 16 19 H 0.08 3.62 7.81 -2.91 -0.02 3.59 16 20 C 0.03 1.50 5.39 84.66 0.46 1.96 16 21 N -0.92 -45.63 11.01 21.45 0.24 -45.40 16 22 Si 0.97 37.97 29.54 68.60 2.03 40.00 16 23 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 C 0.13 5.43 8.03 83.17 0.67 6.10 16 27 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.12 2.31 7.28 -2.39 -0.02 2.29 16 29 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.17 2.61 7.21 -2.91 -0.02 2.59 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 4.37 6.20 -2.91 -0.02 4.35 16 34 H 0.42 13.93 6.11 -92.71 -0.57 13.36 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.10 3.79 8.10 -2.38 -0.02 3.77 16 37 H 0.39 20.52 6.32 -74.06 -0.47 20.05 16 38 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 39 H 0.11 3.98 8.10 -2.39 -0.02 3.96 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -67.84 350.63 -2.79 -70.62 By element: Atomic # 1 Polarization: 48.61 SS G_CDS: 0.07 Total: 48.68 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 5.95 Total: 0.25 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.30 Total: -99.91 kcal Atomic # 8 Polarization: -110.26 SS G_CDS: -6.24 Total: -116.49 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 57.15 SS G_CDS: -0.30 Total: 56.85 kcal Total: -67.84 -2.79 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649891922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.324 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds