Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 110.54551 * 2 1 4 4 O 1.42101 * 110.54173 * 223.24392 * 2 1 3 5 5 N 1.65605 * 104.44906 * 111.62029 * 2 1 3 6 6 C 1.46496 * 119.99941 * 64.99838 * 5 2 1 7 7 C 1.53001 * 109.47222 * 165.00267 * 6 5 2 8 8 H 1.09002 * 110.64202 * 54.29794 * 7 6 5 9 9 C 1.55162 * 110.71709 * 291.15721 * 7 6 5 10 10 C 1.54912 * 101.57717 * 205.95763 * 9 7 6 11 11 N 1.47422 * 104.83500 * 37.00946 * 10 9 7 12 12 S 1.65597 * 125.64507 * 155.90275 * 11 10 9 13 13 O 1.42102 * 104.27513 * 206.04434 * 12 11 10 14 14 O 1.42096 * 104.28205 * 333.90675 * 12 11 10 15 15 C 1.81410 * 104.44681 * 89.98106 * 12 11 10 16 16 C 1.53001 * 109.47059 * 179.97438 * 15 12 11 17 17 C 1.50693 * 109.47078 * 179.97438 * 16 15 12 18 18 H 1.08003 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00334 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99601 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47321 * 89.99899 * 21 19 17 23 23 H 1.48495 * 109.47042 * 210.00112 * 21 19 17 24 24 H 1.48506 * 109.47105 * 330.00196 * 21 19 17 25 25 C 1.47018 * 108.70074 * 335.87099 * 11 10 9 26 26 H 1.09004 * 109.47596 * 308.38284 * 1 2 3 27 27 H 1.09004 * 109.46929 * 68.37952 * 1 2 3 28 28 H 1.09001 * 109.47638 * 188.38020 * 1 2 3 29 29 H 0.96996 * 119.99826 * 245.00296 * 5 2 1 30 30 H 1.08999 * 109.47219 * 45.00221 * 6 5 2 31 31 H 1.09006 * 109.47416 * 285.00074 * 6 5 2 32 32 H 1.08999 * 111.00577 * 324.02794 * 9 7 6 33 33 H 1.08996 * 111.00139 * 87.88563 * 9 7 6 34 34 H 1.09003 * 110.36123 * 155.85332 * 10 9 7 35 35 H 1.09001 * 110.36394 * 278.16548 * 10 9 7 36 36 H 1.09000 * 109.46839 * 299.99515 * 15 12 11 37 37 H 1.08995 * 109.47101 * 59.99365 * 15 12 11 38 38 H 1.08998 * 109.47274 * 300.00354 * 16 15 12 39 39 H 1.09006 * 109.46873 * 59.99472 * 16 15 12 40 40 H 0.97003 * 120.00004 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.88087 * 241.63802 * 25 11 10 42 42 H 1.09003 * 109.87911 * 120.47955 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9704 1.8510 7 6 2.6874 -2.3828 3.0904 8 1 2.5300 -1.6726 3.9022 9 6 4.1972 -2.5083 2.7557 10 6 4.6694 -3.5245 3.8254 11 7 3.5523 -4.4770 3.9602 12 16 3.6743 -6.0372 4.5017 13 8 2.5741 -6.7045 3.8988 14 8 5.0120 -6.4094 4.1997 15 6 3.4378 -5.9132 6.2961 16 6 3.5289 -7.3073 6.9200 17 6 3.3330 -7.2042 8.4106 18 1 3.1612 -6.2408 8.8674 19 6 3.3742 -8.3398 9.1915 20 7 3.2028 -8.2500 10.4923 21 14 3.6722 -10.0062 8.4016 22 1 5.1310 -10.2813 8.3615 23 1 2.9915 -11.0596 9.1965 24 1 3.1311 -10.0023 7.0186 25 6 2.3119 -3.8121 3.5350 26 1 -0.3634 0.6381 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3634 -1.0167 0.1498 29 1 2.6919 -0.0235 2.1256 30 1 2.1393 -2.6333 1.0222 31 1 0.8241 -2.0404 2.0648 32 1 4.3431 -2.9033 1.7503 33 1 4.7047 -1.5512 2.8752 34 1 5.5688 -4.0398 3.4882 35 1 4.8536 -3.0192 4.7734 36 1 4.2111 -5.2733 6.7211 37 1 2.4571 -5.4856 6.5046 38 1 2.7555 -7.9469 6.4948 39 1 4.5095 -7.7353 6.7114 40 1 3.2314 -9.0490 11.0416 41 1 1.6101 -3.7689 4.3679 42 1 1.8675 -4.3551 2.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664026458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -145.369355 kcal Electronic energy + Delta-G solvation = -25606.713737 eV Core-core repulsion = 21648.145329 eV Total energy + Delta-G solvation = -3958.568408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.15899 -37.52852 -36.77851 -36.39163 -35.66584 -35.54211 -33.97729 -31.51126 -31.12629 -29.97921 -29.59467 -26.02046 -25.36620 -22.64176 -21.20195 -20.97772 -19.82735 -18.77114 -18.06246 -17.73677 -17.18145 -16.95667 -16.64699 -16.19328 -15.63826 -15.37920 -15.03705 -14.57781 -14.36952 -14.01286 -13.93917 -13.74856 -13.65308 -13.55117 -13.10045 -12.84396 -12.69114 -12.53044 -12.49863 -12.39400 -11.93200 -11.81603 -11.73282 -11.57716 -11.50237 -11.38964 -11.30912 -11.27722 -11.22871 -10.98050 -10.47398 -10.18506 -9.94875 -9.77058 -9.45893 -8.89257 -8.69105 -6.19410 -4.20888 -0.20724 0.55927 2.23106 2.87590 3.24609 3.32060 3.33885 3.36021 3.71186 4.04745 4.08949 4.15314 4.27609 4.33339 4.35145 4.47166 4.55218 4.79766 4.97709 5.05270 5.08450 5.12269 5.14588 5.22480 5.37335 5.38731 5.48595 5.50836 5.61024 5.67875 5.73367 5.94691 6.04117 6.24748 6.35396 6.47912 6.78211 6.90593 7.51706 8.33442 8.81345 9.40160 10.92884 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002200 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.045068 B =12722.127603 C =12876.424730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.961 6.961 4 O -0.955 6.955 5 N -1.118 6.118 6 C 0.120 3.880 7 C -0.105 4.105 8 H 0.095 0.905 9 C -0.125 4.125 10 C 0.113 3.887 11 N -1.018 6.018 12 S 2.604 3.396 13 O -0.961 6.961 14 O -0.960 6.960 15 C -0.581 4.581 16 C -0.007 4.007 17 C -0.520 4.520 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.895 5.895 21 Si 0.870 3.130 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.126 3.874 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.419 0.581 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.267 0.733 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 18.846 -18.942 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.707 3.293 3 O -0.951 6.951 4 O -0.945 6.945 5 N -0.878 5.878 6 C -0.006 4.006 7 C -0.126 4.126 8 H 0.113 0.887 9 C -0.164 4.164 10 C -0.012 4.012 11 N -0.855 5.855 12 S 2.703 3.297 13 O -0.951 6.951 14 O -0.951 6.951 15 C -0.715 4.715 16 C -0.047 4.047 17 C -0.559 4.559 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.696 3.304 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.001 4.001 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.254 0.746 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.640 18.041 -20.151 27.443 hybrid contribution -0.532 -0.355 1.065 1.242 sum -5.172 17.686 -19.087 26.530 Atomic orbital electron populations 1.30535 1.28463 1.11771 1.11630 1.04685 0.77534 0.73807 0.73272 1.93629 1.77984 1.37764 1.85722 1.93636 1.76909 1.61745 1.62186 1.55533 1.74345 1.21286 1.36640 1.21382 0.99073 0.81729 0.98459 1.22427 0.95906 0.97020 0.97245 0.88652 1.22872 0.94282 0.99442 0.99774 1.22041 0.89940 0.90319 0.98886 1.58822 1.14268 1.31028 1.81353 1.05320 0.74179 0.71481 0.78682 1.93542 1.55011 1.71313 1.75280 1.93543 1.37216 1.80249 1.84082 1.30336 1.11011 1.09317 1.20792 1.19415 0.97817 0.88239 0.99203 1.20836 1.50653 0.95956 0.88417 0.90444 1.24992 0.94212 0.99180 0.94752 1.69878 1.49385 1.29700 1.04349 0.86919 0.79269 0.83958 0.80272 1.19648 1.20736 1.18611 1.21616 0.86480 0.91787 1.00180 0.85193 0.85367 0.85264 0.74607 0.89476 0.91154 0.90025 0.89852 0.89650 0.91383 0.85693 0.85713 0.94934 0.95385 0.92353 0.91040 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.64 10.89 101.05 1.10 -0.53 16 2 S 2.62 14.82 6.10 -107.50 -0.66 14.16 16 3 O -0.96 -8.87 18.08 -57.54 -1.04 -9.91 16 4 O -0.95 -9.35 17.50 -57.54 -1.01 -10.36 16 5 N -1.12 -4.83 5.75 -10.61 -0.06 -4.89 16 6 C 0.12 0.58 5.44 -4.04 -0.02 0.56 16 7 C -0.10 -0.64 2.99 -88.78 -0.27 -0.91 16 8 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 9 C -0.12 -0.91 6.40 -24.58 -0.16 -1.07 16 10 C 0.11 1.11 7.07 -2.53 -0.02 1.09 16 11 N -1.02 -12.28 3.62 -111.42 -0.40 -12.68 16 12 S 2.60 43.22 5.65 -107.50 -0.61 42.61 16 13 O -0.96 -18.31 17.60 -57.54 -1.01 -19.32 16 14 O -0.96 -18.51 17.28 -57.54 -0.99 -19.50 16 15 C -0.58 -10.33 6.12 37.16 0.23 -10.11 16 16 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 17 C -0.52 -14.33 9.66 -34.44 -0.33 -14.67 16 18 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 21 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 25 C 0.13 1.15 6.50 -3.07 -0.02 1.13 16 26 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 27 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 29 H 0.42 1.30 8.62 -34.47 -0.30 1.00 16 30 H 0.09 0.50 7.61 -51.93 -0.40 0.11 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.66 7.98 -51.93 -0.41 0.24 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.91 7.67 -51.93 -0.40 0.52 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 37 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 38 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.69 7.83 -51.93 -0.41 0.28 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -40.30 370.54 -10.28 -50.58 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.49 Total: -4.02 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 0.30 Total: -22.85 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.31 Total: -43.60 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -4.05 Total: -59.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -1.26 Total: 56.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.30 -10.28 -50.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664026458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.786 kcal (2) G-P(sol) polarization free energy of solvation -40.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds