Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 110.54551 * 2 1 4 4 O 1.42101 * 110.54173 * 223.24392 * 2 1 3 5 5 N 1.65605 * 104.44906 * 111.62029 * 2 1 3 6 6 C 1.46496 * 119.99941 * 64.99838 * 5 2 1 7 7 C 1.53001 * 109.47222 * 165.00267 * 6 5 2 8 8 H 1.09002 * 110.64202 * 54.29794 * 7 6 5 9 9 C 1.55162 * 110.71709 * 291.15721 * 7 6 5 10 10 C 1.54912 * 101.57717 * 205.95763 * 9 7 6 11 11 N 1.47422 * 104.83500 * 37.00946 * 10 9 7 12 12 S 1.65597 * 125.64507 * 155.90275 * 11 10 9 13 13 O 1.42102 * 104.27513 * 206.04434 * 12 11 10 14 14 O 1.42096 * 104.28205 * 333.90675 * 12 11 10 15 15 C 1.81410 * 104.44681 * 89.98106 * 12 11 10 16 16 C 1.53001 * 109.47059 * 179.97438 * 15 12 11 17 17 C 1.50693 * 109.47078 * 179.97438 * 16 15 12 18 18 H 1.08003 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00334 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99601 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47321 * 89.99899 * 21 19 17 23 23 H 1.48495 * 109.47042 * 210.00112 * 21 19 17 24 24 H 1.48506 * 109.47105 * 330.00196 * 21 19 17 25 25 C 1.47018 * 108.70074 * 335.87099 * 11 10 9 26 26 H 1.09004 * 109.47596 * 308.38284 * 1 2 3 27 27 H 1.09004 * 109.46929 * 68.37952 * 1 2 3 28 28 H 1.09001 * 109.47638 * 188.38020 * 1 2 3 29 29 H 0.96996 * 119.99826 * 245.00296 * 5 2 1 30 30 H 1.08999 * 109.47219 * 45.00221 * 6 5 2 31 31 H 1.09006 * 109.47416 * 285.00074 * 6 5 2 32 32 H 1.08999 * 111.00577 * 324.02794 * 9 7 6 33 33 H 1.08996 * 111.00139 * 87.88563 * 9 7 6 34 34 H 1.09003 * 110.36123 * 155.85332 * 10 9 7 35 35 H 1.09001 * 110.36394 * 278.16548 * 10 9 7 36 36 H 1.09000 * 109.46839 * 299.99515 * 15 12 11 37 37 H 1.08995 * 109.47101 * 59.99365 * 15 12 11 38 38 H 1.08998 * 109.47274 * 300.00354 * 16 15 12 39 39 H 1.09006 * 109.46873 * 59.99472 * 16 15 12 40 40 H 0.97003 * 120.00004 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.88087 * 241.63802 * 25 11 10 42 42 H 1.09003 * 109.87911 * 120.47955 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9704 1.8510 7 6 2.6874 -2.3828 3.0904 8 1 2.5300 -1.6726 3.9022 9 6 4.1972 -2.5083 2.7557 10 6 4.6694 -3.5245 3.8254 11 7 3.5523 -4.4770 3.9602 12 16 3.6743 -6.0372 4.5017 13 8 2.5741 -6.7045 3.8988 14 8 5.0120 -6.4094 4.1997 15 6 3.4378 -5.9132 6.2961 16 6 3.5289 -7.3073 6.9200 17 6 3.3330 -7.2042 8.4106 18 1 3.1612 -6.2408 8.8674 19 6 3.3742 -8.3398 9.1915 20 7 3.2028 -8.2500 10.4923 21 14 3.6722 -10.0062 8.4016 22 1 5.1310 -10.2813 8.3615 23 1 2.9915 -11.0596 9.1965 24 1 3.1311 -10.0023 7.0186 25 6 2.3119 -3.8121 3.5350 26 1 -0.3634 0.6381 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3634 -1.0167 0.1498 29 1 2.6919 -0.0235 2.1256 30 1 2.1393 -2.6333 1.0222 31 1 0.8241 -2.0404 2.0648 32 1 4.3431 -2.9033 1.7503 33 1 4.7047 -1.5512 2.8752 34 1 5.5688 -4.0398 3.4882 35 1 4.8536 -3.0192 4.7734 36 1 4.2111 -5.2733 6.7211 37 1 2.4571 -5.4856 6.5046 38 1 2.7555 -7.9469 6.4948 39 1 4.5095 -7.7353 6.7114 40 1 3.2314 -9.0490 11.0416 41 1 1.6101 -3.7689 4.3679 42 1 1.8675 -4.3551 2.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664026458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -180.573689 kcal Electronic energy + Delta-G solvation = -25608.240311 eV Core-core repulsion = 21648.145329 eV Total energy + Delta-G solvation = -3960.094983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81134 -38.20642 -38.09818 -37.04995 -36.95950 -36.09710 -35.89164 -33.47246 -31.79773 -30.26992 -30.19299 -27.88263 -25.92216 -23.58288 -22.87075 -21.52655 -20.30005 -19.95366 -19.37092 -18.61633 -18.34989 -17.77464 -17.18242 -17.03691 -17.01686 -16.40729 -16.34302 -15.46826 -15.39373 -15.11802 -14.85725 -14.68641 -14.57748 -13.99645 -13.87040 -13.81821 -13.79439 -13.36451 -13.25839 -13.18992 -13.14288 -13.10878 -13.07390 -12.98404 -12.94858 -12.51227 -12.23712 -12.06154 -11.95176 -11.92048 -11.85504 -11.71282 -11.52571 -11.28308 -10.84927 -10.27172 -9.87852 -8.37048 -6.42690 -0.77409 -0.59193 1.31810 1.33791 1.43670 1.70746 1.87476 2.29113 2.81496 2.96044 2.96887 3.07324 3.34986 3.52297 3.71840 3.82245 3.92808 4.08561 4.09978 4.26690 4.36227 4.41967 4.52519 4.56226 4.60488 4.66166 4.77701 4.89423 4.99584 5.02596 5.06132 5.08542 5.11464 5.15943 5.21237 5.39800 5.47077 5.55415 6.16207 6.22213 6.63272 7.21729 8.78327 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002200 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.045068 B =12722.127603 C =12876.424730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.623 3.377 3 O -1.002 7.002 4 O -1.005 7.005 5 N -1.112 6.112 6 C 0.115 3.885 7 C -0.094 4.094 8 H 0.121 0.879 9 C -0.123 4.123 10 C 0.102 3.898 11 N -1.015 6.015 12 S 2.633 3.367 13 O -0.986 6.986 14 O -0.990 6.990 15 C -0.586 4.586 16 C -0.018 4.018 17 C -0.526 4.526 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.939 5.939 21 Si 0.924 3.076 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.249 1.249 25 C 0.110 3.890 26 H 0.151 0.849 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.426 0.574 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 19.950 -20.013 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.719 3.281 3 O -0.993 6.993 4 O -0.995 6.995 5 N -0.873 5.873 6 C -0.011 4.011 7 C -0.115 4.115 8 H 0.139 0.861 9 C -0.162 4.162 10 C -0.022 4.022 11 N -0.854 5.854 12 S 2.731 3.269 13 O -0.977 6.977 14 O -0.981 6.981 15 C -0.717 4.717 16 C -0.057 4.057 17 C -0.565 4.565 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.579 5.579 21 Si 0.747 3.253 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.173 1.173 25 C -0.016 4.016 26 H 0.169 0.831 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.262 0.738 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.867 19.146 -21.214 29.172 hybrid contribution -0.199 -0.567 1.397 1.521 sum -6.066 18.580 -19.816 27.833 Atomic orbital electron populations 1.30351 1.23535 1.13664 1.13298 1.04144 0.79056 0.72129 0.72735 1.93571 1.79986 1.39483 1.86248 1.93575 1.79174 1.62725 1.64006 1.55250 1.74911 1.21180 1.35988 1.21477 1.00790 0.81471 0.97388 1.22422 0.94856 0.95648 0.98554 0.86129 1.22900 0.95555 0.99567 0.98195 1.22333 0.88771 0.90314 1.00811 1.58434 1.16442 1.30140 1.80414 1.04128 0.72867 0.72283 0.77615 1.93502 1.55764 1.73025 1.75381 1.93501 1.38708 1.81679 1.84168 1.30323 1.12619 1.06377 1.22380 1.19378 0.97716 0.91783 0.96836 1.21164 1.49627 0.94851 0.90863 0.93150 1.25871 0.94245 1.03199 0.95228 1.70002 1.51121 1.30923 1.05840 0.86033 0.79751 0.79512 0.79990 1.18662 1.19878 1.17298 1.21995 0.85438 0.93231 1.00909 0.83061 0.84213 0.83437 0.73785 0.90769 0.87935 0.91230 0.87549 0.91117 0.89412 0.84387 0.84074 0.94932 0.95291 0.92114 0.89386 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.90 10.89 113.37 1.23 0.33 16 2 S 2.62 26.18 6.10 -56.49 -0.34 25.83 16 3 O -1.00 -17.91 18.08 -127.65 -2.31 -20.22 16 4 O -1.00 -19.46 17.50 -127.65 -2.23 -21.69 16 5 N -1.11 -6.90 5.75 -187.49 -1.08 -7.98 16 6 C 0.12 0.77 5.44 86.38 0.47 1.24 16 7 C -0.09 -0.85 2.99 -9.60 -0.03 -0.88 16 8 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 9 C -0.12 -1.52 6.40 31.99 0.20 -1.32 16 10 C 0.10 1.82 7.07 86.86 0.61 2.44 16 11 N -1.01 -22.73 3.62 -506.43 -1.83 -24.56 16 12 S 2.63 84.82 5.65 -56.49 -0.32 84.50 16 13 O -0.99 -36.64 17.60 -127.65 -2.25 -38.89 16 14 O -0.99 -37.73 17.28 -127.65 -2.21 -39.94 16 15 C -0.59 -20.23 6.12 71.98 0.44 -19.79 16 16 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 17 C -0.53 -29.34 9.66 25.60 0.25 -29.09 16 18 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 19 C 0.01 0.76 5.47 84.66 0.46 1.22 16 20 N -0.94 -57.21 13.96 21.45 0.30 -56.91 16 21 Si 0.92 43.54 27.47 68.60 1.88 45.42 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 25 C 0.11 1.71 6.50 86.73 0.56 2.28 16 26 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.15 -0.23 8.14 -2.39 -0.02 -0.24 16 29 H 0.43 1.53 8.62 -96.75 -0.83 0.70 16 30 H 0.07 0.73 7.61 -2.39 -0.02 0.71 16 31 H 0.10 0.06 8.14 -2.38 -0.02 0.04 16 32 H 0.07 1.04 7.98 -2.39 -0.02 1.03 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.47 7.67 -2.39 -0.02 1.45 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 37 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 38 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 39 H 0.03 1.32 7.57 -2.38 -0.02 1.30 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.18 7.83 -2.39 -0.02 1.16 16 Total: -1.00 -89.13 370.54 -5.92 -95.05 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.13 Total: 3.66 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 4.33 Total: -44.28 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.61 Total: -89.45 kcal Atomic # 8 Polarization: -111.74 SS G_CDS: -8.99 Total: -120.74 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 16 Polarization: 110.99 SS G_CDS: -0.66 Total: 110.33 kcal Total: -89.13 -5.92 -95.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664026458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.521 kcal (2) G-P(sol) polarization free energy of solvation -89.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds