Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42108 * 110.54106 * 2 1 4 4 O 1.42096 * 110.54450 * 223.25081 * 2 1 3 5 5 N 1.65602 * 104.45274 * 111.62303 * 2 1 3 6 6 C 1.46495 * 119.99648 * 64.99844 * 5 2 1 7 7 C 1.52998 * 109.46754 * 165.00003 * 6 5 2 8 8 H 1.08997 * 110.89377 * 308.88224 * 7 6 5 9 9 C 1.55155 * 111.03647 * 72.79060 * 7 6 5 10 10 C 1.54327 * 102.94571 * 153.58896 * 9 7 6 11 11 N 1.47024 * 107.26774 * 337.80617 * 10 9 7 12 12 S 1.65601 * 125.64411 * 179.20663 * 11 10 9 13 13 O 1.42095 * 104.28103 * 25.75937 * 12 11 10 14 14 O 1.42101 * 104.27389 * 153.62174 * 12 11 10 15 15 C 1.81401 * 104.45005 * 269.68722 * 12 11 10 16 16 C 1.53000 * 109.47241 * 180.02562 * 15 12 11 17 17 C 1.50702 * 109.47070 * 180.02562 * 16 15 12 18 18 H 1.07999 * 120.00229 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00287 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47331 * 89.99753 * 21 19 17 23 23 H 1.48500 * 109.47072 * 209.99419 * 21 19 17 24 24 H 1.48497 * 109.47000 * 329.99537 * 21 19 17 25 25 C 1.47426 * 108.70449 * 358.94057 * 11 10 9 26 26 H 1.08998 * 109.46851 * 308.37369 * 1 2 3 27 27 H 1.08994 * 109.47326 * 68.37979 * 1 2 3 28 28 H 1.09001 * 109.46603 * 188.37260 * 1 2 3 29 29 H 0.96999 * 119.99623 * 245.00259 * 5 2 1 30 30 H 1.09002 * 109.47074 * 45.00967 * 6 5 2 31 31 H 1.08993 * 109.47727 * 285.00245 * 6 5 2 32 32 H 1.08999 * 110.71965 * 271.94862 * 9 7 6 33 33 H 1.09000 * 110.72417 * 35.04883 * 9 7 6 34 34 H 1.08995 * 109.88184 * 218.39040 * 10 9 7 35 35 H 1.09002 * 109.88385 * 97.22047 * 10 9 7 36 36 H 1.08999 * 109.47415 * 300.00510 * 15 12 11 37 37 H 1.08996 * 109.46936 * 60.00193 * 15 12 11 38 38 H 1.08995 * 109.47198 * 299.99915 * 16 15 12 39 39 H 1.08996 * 109.47267 * 60.00066 * 16 15 12 40 40 H 0.96997 * 120.00295 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.36518 * 142.96440 * 25 11 10 42 42 H 1.08997 * 110.36787 * 265.28818 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.8909 -1.9705 1.8508 7 6 2.6877 -2.3829 3.0901 8 1 3.7492 -2.1741 2.9569 9 6 2.1390 -1.6852 4.3626 10 6 2.5320 -2.6632 5.4899 11 7 2.7294 -3.9832 4.8733 12 16 3.1797 -5.3631 5.6705 13 8 2.7363 -5.1576 7.0047 14 8 2.6497 -6.4154 4.8761 15 6 4.9921 -5.3590 5.5942 16 6 5.5353 -6.6002 6.3049 17 6 7.0410 -6.5965 6.2421 18 1 7.5587 -5.7897 5.7447 19 6 7.7576 -7.6235 6.8188 20 7 7.1272 -8.6063 7.4242 21 14 9.6239 -7.6192 6.7404 22 1 10.1676 -6.9072 7.9247 23 1 10.1222 -9.0181 6.7322 24 1 10.0657 -6.9291 5.5019 25 6 2.4539 -3.8763 3.4290 26 1 -0.3633 0.6380 0.8057 27 1 -0.3633 0.3786 -0.9553 28 1 -0.3632 -1.0167 0.1496 29 1 2.6921 -0.0235 2.1255 30 1 2.1396 -2.6333 1.0219 31 1 0.8244 -2.0405 2.0646 32 1 2.6176 -0.7167 4.5081 33 1 1.0562 -1.5739 4.3051 34 1 1.7339 -2.7155 6.2303 35 1 3.4573 -2.3324 5.9618 36 1 5.3120 -5.3681 4.5523 37 1 5.3742 -4.4632 6.0837 38 1 5.2155 -6.5915 7.3469 39 1 5.1531 -7.4958 5.8151 40 1 7.6313 -9.3286 7.8302 41 1 3.1415 -4.5057 2.8640 42 1 1.4218 -4.1561 3.2179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664026461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -149.718853 kcal Electronic energy + Delta-G solvation = -25564.915479 eV Core-core repulsion = 21606.158462 eV Total energy + Delta-G solvation = -3958.757017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.12804 -37.51316 -36.65074 -36.37320 -35.60840 -35.45148 -33.90953 -31.17940 -31.09452 -29.97495 -29.58542 -25.66052 -25.33933 -22.65945 -21.47631 -20.93820 -19.82300 -18.67727 -18.04037 -17.59027 -17.21928 -16.72863 -16.55867 -16.02945 -15.54588 -15.31033 -14.82248 -14.62767 -14.55790 -14.02913 -13.78541 -13.68063 -13.66029 -13.39080 -13.29302 -12.75520 -12.53516 -12.50934 -12.45609 -12.40238 -11.78102 -11.69928 -11.61395 -11.55530 -11.41568 -11.31676 -11.19345 -11.09619 -11.01576 -10.98196 -10.44618 -10.39940 -9.96114 -9.79487 -9.36378 -8.80562 -8.51992 -6.14099 -4.19823 -0.19180 0.68044 2.25007 2.99204 3.25206 3.31604 3.34381 3.35988 3.72904 4.06952 4.10762 4.23560 4.26998 4.35656 4.42550 4.51400 4.61137 4.80985 4.94277 5.01086 5.12270 5.15160 5.21103 5.28003 5.37879 5.42958 5.54001 5.60207 5.64939 5.67228 5.78710 5.94882 6.09468 6.40839 6.46312 6.50014 7.27504 7.33439 7.78847 8.15513 8.83582 9.45117 10.96904 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002383 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.301285 B =11746.321388 C =12724.944979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.961 6.961 4 O -0.955 6.955 5 N -1.118 6.118 6 C 0.122 3.878 7 C -0.110 4.110 8 H 0.099 0.901 9 C -0.125 4.125 10 C 0.120 3.880 11 N -1.019 6.019 12 S 2.606 3.394 13 O -0.961 6.961 14 O -0.961 6.961 15 C -0.588 4.588 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.129 3.871 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.419 0.581 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 19.182 -12.380 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.707 3.293 3 O -0.951 6.951 4 O -0.945 6.945 5 N -0.878 5.878 6 C -0.005 4.005 7 C -0.132 4.132 8 H 0.117 0.883 9 C -0.164 4.164 10 C -0.006 4.006 11 N -0.856 5.856 12 S 2.705 3.295 13 O -0.952 6.952 14 O -0.951 6.951 15 C -0.721 4.721 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.002 3.998 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.254 0.746 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.420 18.462 -12.660 27.183 hybrid contribution 1.117 0.354 0.465 1.260 sum -14.303 18.816 -12.195 26.596 Atomic orbital electron populations 1.30532 1.28522 1.11709 1.11599 1.04685 0.77506 0.73819 0.73269 1.93630 1.77960 1.37776 1.85720 1.93635 1.76883 1.61768 1.62186 1.55542 1.74350 1.21371 1.36580 1.21305 0.98997 0.81729 0.98429 1.22631 1.01352 0.95614 0.93581 0.88294 1.22744 1.01630 0.98403 0.93595 1.21651 1.01431 0.81817 0.95674 1.58940 1.84793 1.24702 1.17136 1.05343 0.79000 0.71815 0.73319 1.93536 1.80705 1.84561 1.36385 1.93542 1.78006 1.53264 1.70326 1.30482 1.21118 1.10337 1.10207 1.18968 0.98154 0.88530 0.95477 1.20996 0.90078 1.08074 1.36825 0.92047 1.25072 0.99125 0.95306 0.94996 1.69952 1.35922 1.10912 1.36067 0.86461 0.84817 0.77420 0.78541 1.20467 1.20987 1.19745 1.21871 1.01753 0.95336 0.80812 0.85234 0.85379 0.85307 0.74593 0.89395 0.91233 0.90048 0.90351 0.91022 0.91489 0.86249 0.86293 0.94868 0.94827 0.92504 0.90038 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.58 10.89 101.05 1.10 -0.48 16 2 S 2.62 15.14 6.10 -107.50 -0.66 14.49 16 3 O -0.96 -9.11 18.08 -57.54 -1.04 -10.15 16 4 O -0.95 -9.49 17.50 -57.54 -1.01 -10.50 16 5 N -1.12 -5.12 5.84 -10.62 -0.06 -5.18 16 6 C 0.12 0.59 5.59 -4.05 -0.02 0.57 16 7 C -0.11 -0.73 3.09 -88.47 -0.27 -1.00 16 8 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 9 C -0.12 -0.76 6.26 -24.90 -0.16 -0.91 16 10 C 0.12 1.17 6.89 -3.06 -0.02 1.15 16 11 N -1.02 -12.66 3.62 -111.42 -0.40 -13.06 16 12 S 2.61 45.52 5.65 -107.50 -0.61 44.92 16 13 O -0.96 -19.51 17.60 -57.54 -1.01 -20.52 16 14 O -0.96 -19.39 17.60 -57.54 -1.01 -20.40 16 15 C -0.59 -11.01 6.12 37.16 0.23 -10.78 16 16 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 17 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.13 1.23 6.36 -2.53 -0.02 1.22 16 26 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.13 0.16 8.14 -51.92 -0.42 -0.27 16 29 H 0.42 1.51 8.51 -34.47 -0.29 1.21 16 30 H 0.09 0.46 7.69 -51.93 -0.40 0.06 16 31 H 0.07 0.18 7.97 -51.93 -0.41 -0.23 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 37 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -40.69 374.76 -10.70 -51.39 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.55 Total: -4.33 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 0.29 Total: -22.78 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.27 Total: -43.90 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -4.07 Total: -61.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -1.26 Total: 59.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.69 -10.70 -51.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664026461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.333 kcal (2) G-P(sol) polarization free energy of solvation -40.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds