Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35980 * 117.00022 * 2 1 4 4 C 1.38657 * 120.09122 * 269.97323 * 3 2 1 5 5 Cl 1.73599 * 119.99871 * 0.04884 * 4 3 2 6 6 C 1.38333 * 119.99784 * 180.02562 * 4 3 2 7 7 C 1.38301 * 120.18336 * 0.02562 * 6 4 3 8 8 C 1.38150 * 120.17866 * 359.74444 * 7 6 4 9 9 C 1.38823 * 120.00467 * 0.50476 * 8 7 6 10 10 N 1.39875 * 120.09400 * 179.77607 * 9 8 7 11 11 C 1.34771 * 120.00462 * 33.24727 * 10 9 8 12 12 O 1.21390 * 119.99505 * 5.44991 * 11 10 9 13 13 C 1.49338 * 120.00582 * 185.44943 * 11 10 9 14 14 O 1.21367 * 119.99566 * 6.28113 * 13 11 10 15 15 N 1.34771 * 120.00337 * 186.28127 * 13 11 10 16 16 C 1.46503 * 119.99662 * 5.53963 * 15 13 11 17 17 C 1.46494 * 120.00095 * 185.54228 * 15 13 11 18 18 H 1.08999 * 109.47385 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.47318 * 119.99904 * 17 15 13 20 20 C 1.50708 * 109.46999 * 240.00082 * 17 15 13 21 21 H 1.07994 * 119.99781 * 3.26968 * 20 17 15 22 22 C 1.37879 * 119.99628 * 183.27568 * 20 17 15 23 23 N 1.31517 * 119.99618 * 155.24378 * 22 20 17 24 24 Si 1.86800 * 120.00300 * 335.51849 * 22 20 17 25 25 H 1.48499 * 109.46852 * 269.72724 * 24 22 20 26 26 H 1.48501 * 109.47085 * 29.72632 * 24 22 20 27 27 H 1.48502 * 109.46983 * 149.72791 * 24 22 20 28 28 H 1.09005 * 109.47270 * 300.00364 * 1 2 3 29 29 H 1.09002 * 109.47058 * 60.00226 * 1 2 3 30 30 H 1.08995 * 109.47455 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.90674 * 179.97438 * 6 4 3 32 32 H 1.08004 * 119.90698 * 180.02562 * 7 6 4 33 33 H 1.08006 * 119.99826 * 180.28178 * 8 7 6 34 34 H 0.97008 * 119.99748 * 213.25200 * 10 9 8 35 35 H 1.08997 * 109.47326 * 275.90566 * 16 15 13 36 36 H 1.08993 * 109.47357 * 35.91369 * 16 15 13 37 37 H 1.09001 * 109.46735 * 155.91072 * 16 15 13 38 38 H 1.09006 * 109.47078 * 174.85955 * 19 17 15 39 39 H 1.08993 * 109.47202 * 294.86175 * 19 17 15 40 40 H 1.08997 * 109.46937 * 54.86479 * 19 17 15 41 41 H 0.96998 * 119.99973 * 355.26787 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3624 1.8308 -1.1997 5 17 1.9689 1.0597 -2.7045 6 6 2.9909 3.0631 -1.1974 7 6 3.3062 3.6806 -0.0008 8 6 2.9904 3.0726 1.1988 9 6 2.3643 1.8336 1.2055 10 7 2.0479 1.2142 2.4190 11 6 1.7052 1.9606 3.4875 12 8 1.5747 3.1619 3.3718 13 6 1.4861 1.3100 4.8137 14 8 1.7265 0.1291 4.9574 15 7 1.0213 2.0342 5.8510 16 6 0.6164 3.4275 5.6486 17 6 0.9211 1.4281 7.1810 18 1 1.2645 0.3945 7.1361 19 6 1.7906 2.2124 8.1658 20 6 -0.5136 1.4607 7.6411 21 1 -1.2824 1.8416 6.9852 22 6 -0.8445 1.0044 8.8994 23 7 -1.9295 1.4484 9.4955 24 14 0.2522 -0.2386 9.7605 25 1 -0.1965 -1.6130 9.4216 26 1 1.6564 -0.0523 9.3149 27 1 0.1683 -0.0386 11.2296 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.2369 3.5438 -2.1328 32 1 3.7965 4.6430 -0.0043 33 1 3.2338 3.5596 2.1316 34 1 2.0753 0.2472 2.4916 35 1 1.4928 4.0728 5.7078 36 1 0.1535 3.5325 4.6675 37 1 -0.0983 3.7139 6.4201 38 1 1.6457 1.8187 9.1718 39 1 2.8388 2.1129 7.8841 40 1 1.5065 3.2645 8.1430 41 1 -2.4596 2.1468 9.0806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131960407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -63.475837 kcal Electronic energy + Delta-G solvation = -27435.588567 eV Core-core repulsion = 23343.083671 eV Total energy + Delta-G solvation = -4092.504896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27152 -39.95939 -38.36843 -37.54211 -36.78482 -36.05646 -34.77774 -32.85674 -30.60965 -30.35748 -29.96183 -27.14480 -26.47447 -25.30065 -24.65212 -23.16543 -22.46559 -20.76816 -19.41753 -18.44891 -17.71269 -17.57067 -17.30291 -16.62690 -16.30936 -15.90863 -15.68703 -15.33293 -14.93527 -14.75140 -14.30448 -14.04202 -13.80039 -13.41242 -13.32350 -12.82219 -12.73136 -12.63890 -12.42984 -12.05287 -11.99297 -11.97921 -11.81786 -11.74598 -11.32928 -11.28929 -11.01159 -10.69364 -10.59580 -10.31595 -10.16941 -9.72849 -9.28731 -9.13517 -8.94447 -8.48947 -8.37077 -7.98987 -6.62075 -4.22708 0.62809 0.72460 1.65983 1.74858 2.46886 2.98575 3.35198 3.40120 3.41292 3.53769 3.57067 3.77766 4.39452 4.49646 4.55669 4.69704 4.91550 4.93493 5.06111 5.06426 5.08569 5.11684 5.42999 5.64809 5.73136 5.83011 5.92728 6.03022 6.03934 6.20969 6.30038 6.32632 6.41572 6.47430 6.78048 6.82931 7.03377 7.06227 7.17343 7.62513 7.73494 8.04973 8.22782 8.36120 8.76306 9.41980 10.73898 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.002691 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.694723 B =10401.115583 C =10943.793586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.076 3.924 4 C -0.036 4.036 5 Cl -0.055 7.055 6 C -0.117 4.117 7 C -0.090 4.090 8 C -0.107 4.107 9 C 0.151 3.849 10 N -0.646 5.646 11 C 0.510 3.490 12 O -0.496 6.496 13 C 0.494 3.506 14 O -0.532 6.532 15 N -0.545 5.545 16 C 0.083 3.917 17 C 0.235 3.765 18 H 0.057 0.943 19 C -0.154 4.154 20 C -0.626 4.626 21 H 0.064 0.936 22 C 0.046 3.954 23 N -0.888 5.888 24 Si 1.034 2.966 25 H -0.283 1.283 26 H -0.271 1.271 27 H -0.284 1.284 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.428 0.572 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.050 0.950 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 3.651 -21.062 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.028 3.972 4 C -0.064 4.064 5 Cl -0.026 7.026 6 C -0.136 4.136 7 C -0.109 4.109 8 C -0.127 4.127 9 C 0.055 3.945 10 N -0.294 5.294 11 C 0.293 3.707 12 O -0.370 6.370 13 C 0.274 3.726 14 O -0.411 6.411 15 N -0.275 5.275 16 C -0.060 4.060 17 C 0.134 3.866 18 H 0.075 0.925 19 C -0.212 4.212 20 C -0.663 4.663 21 H 0.082 0.918 22 C -0.162 4.162 23 N -0.519 5.519 24 Si 0.861 3.139 25 H -0.210 1.210 26 H -0.196 1.196 27 H -0.209 1.209 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.514 2.729 -19.679 22.027 hybrid contribution -0.486 0.654 -1.540 1.742 sum 9.028 3.383 -21.218 23.306 Atomic orbital electron populations 1.23083 0.78142 1.03857 1.00994 1.86080 1.20479 1.23374 1.94115 1.18061 1.00662 0.88745 0.89685 1.21055 1.03926 0.94870 0.86530 1.98372 1.92722 1.81158 1.30397 1.21001 0.99718 0.93303 0.99606 1.21040 0.98947 1.00125 0.90796 1.21279 0.97096 0.94213 1.00123 1.17927 0.98174 0.94069 0.84361 1.43218 1.66127 1.12259 1.07749 1.20914 0.76738 0.87189 0.85830 1.90730 1.47207 1.14281 1.84759 1.19569 0.81297 0.87013 0.84690 1.90737 1.52470 1.14522 1.83359 1.47988 1.57178 1.13012 1.09371 1.21944 1.00291 0.80956 1.02771 1.19425 0.97497 0.93712 0.76000 0.92481 1.22450 0.97297 1.01139 1.00342 1.22026 0.91592 1.49919 1.02763 0.91830 1.25650 0.98396 0.98084 0.94071 1.70831 1.16890 1.26369 1.37832 0.84256 0.76402 0.76907 0.76302 1.20970 1.19628 1.20937 0.93309 0.93175 0.88133 0.84320 0.84169 0.83486 0.73266 0.92968 0.90825 0.90069 0.91888 0.95265 0.93044 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.13 101.05 1.12 1.46 16 2 O -0.32 -3.87 9.41 -19.68 -0.19 -4.05 16 3 C 0.08 0.90 5.74 -39.02 -0.22 0.68 16 4 C -0.04 -0.38 6.33 -39.39 -0.25 -0.63 16 5 Cl -0.06 -0.54 28.50 -51.86 -1.48 -2.02 16 6 C -0.12 -1.02 9.82 -39.52 -0.39 -1.40 16 7 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 8 C -0.11 -1.21 8.65 -39.40 -0.34 -1.55 16 9 C 0.15 1.90 6.29 -83.57 -0.53 1.37 16 10 N -0.65 -8.95 5.18 -10.19 -0.05 -9.00 16 11 C 0.51 8.24 7.43 -11.64 -0.09 8.16 16 12 O -0.50 -8.11 11.09 5.46 0.06 -8.05 16 13 C 0.49 9.68 7.72 -11.64 -0.09 9.59 16 14 O -0.53 -11.50 15.85 5.48 0.09 -11.42 16 15 N -0.55 -11.33 2.75 -175.81 -0.48 -11.81 16 16 C 0.08 1.50 8.07 59.85 0.48 1.99 16 17 C 0.23 5.51 2.18 -69.08 -0.15 5.36 16 18 H 0.06 1.44 5.86 -51.93 -0.30 1.13 16 19 C -0.15 -3.25 8.57 37.16 0.32 -2.94 16 20 C -0.63 -16.73 8.20 -34.44 -0.28 -17.01 16 21 H 0.06 1.83 7.80 -52.49 -0.41 1.42 16 22 C 0.05 1.26 5.17 -17.82 -0.09 1.17 16 23 N -0.89 -25.85 13.70 55.43 0.76 -25.09 16 24 Si 1.03 24.21 26.20 -169.99 -4.45 19.76 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -5.87 5.73 56.52 0.32 -5.54 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.15 1.76 6.41 -52.48 -0.34 1.43 16 34 H 0.43 5.76 8.05 -40.82 -0.33 5.43 16 35 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.07 1.27 6.03 -51.93 -0.31 0.96 16 37 H 0.08 1.56 7.17 -51.93 -0.37 1.19 16 38 H 0.06 1.35 4.74 -51.93 -0.25 1.11 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 41 H 0.27 7.84 8.73 -40.82 -0.36 7.49 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -30.22 357.00 -6.15 -36.38 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.89 Total: 4.87 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.90 Total: 5.06 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.22 Total: -45.91 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.04 Total: -23.52 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.45 Total: 19.76 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.22 -6.15 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131960407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.100 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds