Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35980 * 117.00022 * 2 1 4 4 C 1.38657 * 120.09122 * 269.97323 * 3 2 1 5 5 Cl 1.73599 * 119.99871 * 0.04884 * 4 3 2 6 6 C 1.38333 * 119.99784 * 180.02562 * 4 3 2 7 7 C 1.38301 * 120.18336 * 0.02562 * 6 4 3 8 8 C 1.38150 * 120.17866 * 359.74444 * 7 6 4 9 9 C 1.38823 * 120.00467 * 0.50476 * 8 7 6 10 10 N 1.39875 * 120.09400 * 179.77607 * 9 8 7 11 11 C 1.34771 * 120.00462 * 33.24727 * 10 9 8 12 12 O 1.21390 * 119.99505 * 5.44991 * 11 10 9 13 13 C 1.49338 * 120.00582 * 185.44943 * 11 10 9 14 14 O 1.21367 * 119.99566 * 6.28113 * 13 11 10 15 15 N 1.34771 * 120.00337 * 186.28127 * 13 11 10 16 16 C 1.46503 * 119.99662 * 5.53963 * 15 13 11 17 17 C 1.46494 * 120.00095 * 185.54228 * 15 13 11 18 18 H 1.08999 * 109.47385 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.47318 * 119.99904 * 17 15 13 20 20 C 1.50708 * 109.46999 * 240.00082 * 17 15 13 21 21 H 1.07994 * 119.99781 * 3.26968 * 20 17 15 22 22 C 1.37879 * 119.99628 * 183.27568 * 20 17 15 23 23 N 1.31517 * 119.99618 * 155.24378 * 22 20 17 24 24 Si 1.86800 * 120.00300 * 335.51849 * 22 20 17 25 25 H 1.48499 * 109.46852 * 269.72724 * 24 22 20 26 26 H 1.48501 * 109.47085 * 29.72632 * 24 22 20 27 27 H 1.48502 * 109.46983 * 149.72791 * 24 22 20 28 28 H 1.09005 * 109.47270 * 300.00364 * 1 2 3 29 29 H 1.09002 * 109.47058 * 60.00226 * 1 2 3 30 30 H 1.08995 * 109.47455 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.90674 * 179.97438 * 6 4 3 32 32 H 1.08004 * 119.90698 * 180.02562 * 7 6 4 33 33 H 1.08006 * 119.99826 * 180.28178 * 8 7 6 34 34 H 0.97008 * 119.99748 * 213.25200 * 10 9 8 35 35 H 1.08997 * 109.47326 * 275.90566 * 16 15 13 36 36 H 1.08993 * 109.47357 * 35.91369 * 16 15 13 37 37 H 1.09001 * 109.46735 * 155.91072 * 16 15 13 38 38 H 1.09006 * 109.47078 * 174.85955 * 19 17 15 39 39 H 1.08993 * 109.47202 * 294.86175 * 19 17 15 40 40 H 1.08997 * 109.46937 * 54.86479 * 19 17 15 41 41 H 0.96998 * 119.99973 * 355.26787 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3624 1.8308 -1.1997 5 17 1.9689 1.0597 -2.7045 6 6 2.9909 3.0631 -1.1974 7 6 3.3062 3.6806 -0.0008 8 6 2.9904 3.0726 1.1988 9 6 2.3643 1.8336 1.2055 10 7 2.0479 1.2142 2.4190 11 6 1.7052 1.9606 3.4875 12 8 1.5747 3.1619 3.3718 13 6 1.4861 1.3100 4.8137 14 8 1.7265 0.1291 4.9574 15 7 1.0213 2.0342 5.8510 16 6 0.6164 3.4275 5.6486 17 6 0.9211 1.4281 7.1810 18 1 1.2645 0.3945 7.1361 19 6 1.7906 2.2124 8.1658 20 6 -0.5136 1.4607 7.6411 21 1 -1.2824 1.8416 6.9852 22 6 -0.8445 1.0044 8.8994 23 7 -1.9295 1.4484 9.4955 24 14 0.2522 -0.2386 9.7605 25 1 -0.1965 -1.6130 9.4216 26 1 1.6564 -0.0523 9.3149 27 1 0.1683 -0.0386 11.2296 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.2369 3.5438 -2.1328 32 1 3.7965 4.6430 -0.0043 33 1 3.2338 3.5596 2.1316 34 1 2.0753 0.2472 2.4916 35 1 1.4928 4.0728 5.7078 36 1 0.1535 3.5325 4.6675 37 1 -0.0983 3.7139 6.4201 38 1 1.6457 1.8187 9.1718 39 1 2.8388 2.1129 7.8841 40 1 1.5065 3.2645 8.1430 41 1 -2.4596 2.1468 9.0806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131960407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -83.353972 kcal Electronic energy + Delta-G solvation = -27436.450548 eV Core-core repulsion = 23343.083671 eV Total energy + Delta-G solvation = -4093.366877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42915 -41.11326 -39.71710 -38.39192 -37.78092 -37.49165 -35.98106 -34.80286 -32.17660 -31.38654 -30.90884 -28.07141 -27.87625 -26.94761 -26.28723 -24.19796 -23.43820 -22.17341 -20.87130 -19.56920 -19.52646 -18.80913 -18.52988 -17.85058 -17.53194 -17.10647 -16.82408 -16.45760 -15.99008 -15.90031 -15.53982 -15.39212 -15.09048 -14.87227 -14.59005 -14.29259 -14.19915 -13.90226 -13.60135 -13.48370 -13.44071 -13.20365 -12.96294 -12.81834 -12.75521 -12.48895 -12.41366 -12.05785 -12.00291 -11.61396 -11.50315 -11.29312 -11.19631 -10.53938 -10.45701 -9.77226 -9.76062 -9.37978 -8.78514 -6.41008 -0.30441 -0.09630 0.41773 0.88605 1.23861 1.48090 1.51903 1.71396 1.95383 2.23094 2.40986 2.44457 2.71189 2.95890 3.12777 3.77449 3.90627 4.08120 4.18175 4.26175 4.29442 4.31274 4.32278 4.46090 4.53631 4.66616 4.67248 4.71151 4.77917 4.92870 4.95307 5.04834 5.11921 5.22161 5.26266 5.44832 5.53283 5.72144 5.81301 6.00146 6.17912 6.29798 6.46373 6.55794 6.83960 7.31091 8.54763 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.002691 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.694723 B =10401.115583 C =10943.793586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.336 6.336 3 C 0.067 3.933 4 C -0.046 4.046 5 Cl -0.050 7.050 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.115 4.115 9 C 0.124 3.876 10 N -0.635 5.635 11 C 0.521 3.479 12 O -0.499 6.499 13 C 0.490 3.510 14 O -0.556 6.556 15 N -0.558 5.558 16 C 0.091 3.909 17 C 0.235 3.765 18 H 0.043 0.957 19 C -0.149 4.149 20 C -0.624 4.624 21 H 0.030 0.970 22 C 0.003 3.997 23 N -0.918 5.918 24 Si 1.070 2.930 25 H -0.281 1.281 26 H -0.243 1.243 27 H -0.278 1.278 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.140 0.860 34 H 0.428 0.572 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 4.388 -22.897 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.253 6.253 3 C 0.020 3.980 4 C -0.074 4.074 5 Cl -0.021 7.021 6 C -0.122 4.122 7 C -0.098 4.098 8 C -0.135 4.135 9 C 0.029 3.971 10 N -0.281 5.281 11 C 0.303 3.697 12 O -0.373 6.373 13 C 0.272 3.728 14 O -0.437 6.437 15 N -0.288 5.288 16 C -0.051 4.051 17 C 0.133 3.867 18 H 0.060 0.940 19 C -0.207 4.207 20 C -0.661 4.661 21 H 0.048 0.952 22 C -0.199 4.199 23 N -0.551 5.551 24 Si 0.892 3.108 25 H -0.207 1.207 26 H -0.166 1.166 27 H -0.203 1.203 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.187 0.813 32 H 0.192 0.808 33 H 0.158 0.842 34 H 0.267 0.733 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.654 3.487 -21.572 24.765 hybrid contribution -1.180 0.452 -1.172 1.724 sum 10.474 3.939 -22.744 25.348 Atomic orbital electron populations 1.23186 0.77386 1.04918 1.00727 1.86057 1.21290 1.23759 1.94187 1.18202 1.00979 0.88822 0.90031 1.21232 1.04305 0.95569 0.86305 1.98375 1.92727 1.81247 1.29774 1.21394 0.97680 0.92254 1.00896 1.21400 0.97793 1.00988 0.89624 1.21383 0.97340 0.93760 1.01028 1.18108 1.00171 0.95081 0.83704 1.43019 1.65282 1.12075 1.07763 1.20077 0.77512 0.87007 0.85092 1.90722 1.47922 1.14058 1.84637 1.20115 0.80290 0.86699 0.85709 1.90710 1.53244 1.15640 1.84058 1.47985 1.57887 1.13975 1.08938 1.21963 1.00808 0.79929 1.02399 1.19195 0.95574 0.93845 0.78109 0.93950 1.22330 0.98133 1.00997 0.99237 1.22129 0.92924 1.48875 1.02184 0.95216 1.26875 0.98830 0.99069 0.95176 1.70941 1.18236 1.27307 1.38637 0.83806 0.76463 0.74777 0.75788 1.20732 1.16628 1.20304 0.94581 0.92363 0.86512 0.81341 0.80825 0.84210 0.73281 0.90734 0.90157 0.91871 0.92254 0.92854 0.92402 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 113.37 1.26 1.87 16 2 O -0.34 -7.78 9.41 -93.32 -0.88 -8.66 16 3 C 0.07 1.51 5.74 22.63 0.13 1.64 16 4 C -0.05 -0.87 6.33 22.39 0.14 -0.73 16 5 Cl -0.05 -0.88 28.50 -2.72 -0.08 -0.96 16 6 C -0.10 -1.44 9.82 22.31 0.22 -1.22 16 7 C -0.08 -1.12 10.04 22.26 0.22 -0.90 16 8 C -0.11 -2.38 8.65 22.39 0.19 -2.19 16 9 C 0.12 2.99 6.29 38.26 0.24 3.24 16 10 N -0.63 -17.34 5.18 -304.51 -1.58 -18.92 16 11 C 0.52 16.58 7.43 87.24 0.65 17.23 16 12 O -0.50 -15.78 11.09 -3.37 -0.04 -15.82 16 13 C 0.49 19.16 7.72 87.24 0.67 19.84 16 14 O -0.56 -24.16 15.85 -3.30 -0.05 -24.21 16 15 N -0.56 -23.10 2.75 -828.51 -2.28 -25.38 16 16 C 0.09 3.25 8.07 127.77 1.03 4.29 16 17 C 0.24 10.99 2.18 44.25 0.10 11.09 16 18 H 0.04 2.12 5.86 -2.39 -0.01 2.11 16 19 C -0.15 -6.05 8.57 71.98 0.62 -5.44 16 20 C -0.62 -34.09 8.20 25.60 0.21 -33.88 16 21 H 0.03 1.79 7.80 -2.91 -0.02 1.76 16 22 C 0.00 0.14 5.17 84.65 0.44 0.58 16 23 N -0.92 -54.82 13.70 21.45 0.29 -54.52 16 24 Si 1.07 48.52 26.20 68.60 1.80 50.32 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.24 -9.82 5.73 99.48 0.57 -9.25 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.14 3.11 6.41 -2.91 -0.02 3.09 16 34 H 0.43 11.56 8.05 -92.70 -0.75 10.81 16 35 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.08 2.75 6.03 -2.39 -0.01 2.74 16 37 H 0.06 2.46 7.17 -2.39 -0.02 2.45 16 38 H 0.06 2.44 4.74 -2.38 -0.01 2.43 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.24 7.50 -2.39 -0.02 2.23 16 41 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 Total: -1.00 -66.23 357.00 3.48 -62.75 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.17 Total: 19.99 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.12 Total: 15.41 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.56 Total: -98.82 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.97 Total: -48.69 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.80 Total: 50.32 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -66.23 3.48 -62.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131960407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds