Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35978 * 117.00010 * 2 1 4 4 C 1.38542 * 120.07621 * 359.72414 * 3 2 1 5 5 C 1.38239 * 120.03376 * 180.27521 * 4 3 2 6 6 C 1.38412 * 120.17882 * 359.97438 * 5 4 3 7 7 Cl 1.73595 * 119.92162 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.14788 * 0.02562 * 6 5 4 9 9 C 1.38796 * 119.97069 * 359.97438 * 8 6 5 10 10 N 1.39878 * 120.09010 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00081 * 326.51924 * 10 9 8 12 12 O 1.21389 * 120.00315 * 5.18613 * 11 10 9 13 13 C 1.49334 * 119.99845 * 185.18506 * 11 10 9 14 14 O 1.21362 * 120.00112 * 359.70319 * 13 11 10 15 15 N 1.34773 * 119.99837 * 179.70608 * 13 11 10 16 16 C 1.46495 * 120.00461 * 354.33651 * 15 13 11 17 17 C 1.46502 * 119.99865 * 174.33932 * 15 13 11 18 18 H 1.09000 * 109.47127 * 359.97438 * 17 15 13 19 19 C 1.53011 * 109.47052 * 239.99994 * 17 15 13 20 20 C 1.50694 * 109.47492 * 120.00169 * 17 15 13 21 21 H 1.08001 * 120.00091 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00194 * 180.02562 * 20 17 15 23 23 N 1.31516 * 120.00133 * 359.97438 * 22 20 17 24 24 Si 1.86804 * 120.00085 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47120 * 119.99963 * 24 22 20 27 27 H 1.48497 * 109.47382 * 239.99887 * 24 22 20 28 28 H 1.09000 * 109.47123 * 300.00100 * 1 2 3 29 29 H 1.09003 * 109.46984 * 59.99823 * 1 2 3 30 30 H 1.08995 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.98145 * 0.24760 * 4 3 2 32 32 H 1.08000 * 119.90757 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.01579 * 180.02562 * 8 6 5 34 34 H 0.96999 * 119.99847 * 146.52295 * 10 9 8 35 35 H 1.08998 * 109.46978 * 84.06326 * 16 15 13 36 36 H 1.08998 * 109.47458 * 204.06699 * 16 15 13 37 37 H 1.09003 * 109.47034 * 324.06745 * 16 15 13 38 38 H 1.09003 * 109.47012 * 180.02562 * 19 17 15 39 39 H 1.09000 * 109.46974 * 299.99873 * 19 17 15 40 40 H 1.09000 * 109.46927 * 59.99655 * 19 17 15 41 41 H 0.97006 * 120.00353 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3745 -0.0058 5 6 1.9219 3.6057 -0.0115 6 6 3.3039 3.6814 -0.0110 7 17 4.0862 5.2311 -0.0175 8 6 4.0626 2.5257 -0.0052 9 6 3.4380 1.2862 0.0005 10 7 4.2032 0.1153 0.0058 11 6 5.3866 0.0808 -0.6381 12 8 5.8330 1.0907 -1.1423 13 6 6.1489 -1.2000 -0.7312 14 8 5.7052 -2.2086 -0.2224 15 7 7.3295 -1.2358 -1.3802 16 6 7.8062 -0.0521 -2.0997 17 6 8.1362 -2.4587 -1.3662 18 1 7.6237 -3.2255 -0.7853 19 6 9.4976 -2.1644 -0.7327 20 6 8.3342 -2.9461 -2.7784 21 1 7.9020 -2.3999 -3.6038 22 6 9.0662 -4.0899 -3.0166 23 7 9.5921 -4.7553 -2.0115 24 14 9.3111 -4.6945 -4.7671 25 1 8.6240 -3.7747 -5.7090 26 1 10.7623 -4.7296 -5.0802 27 1 8.7421 -6.0593 -4.9036 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2148 2.3191 -0.0062 32 1 1.3329 4.5110 -0.0164 33 1 5.1409 2.5872 -0.0044 34 1 3.8820 -0.6718 0.4729 35 1 8.3116 0.6171 -1.4034 36 1 8.5027 -0.3575 -2.8805 37 1 6.9590 0.4648 -2.5504 38 1 10.0979 -3.0741 -0.7227 39 1 10.0103 -1.3975 -1.3133 40 1 9.3544 -1.8118 0.2887 41 1 10.1075 -5.5599 -2.1791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132322471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -66.122755 kcal Electronic energy + Delta-G solvation = -27163.296582 eV Core-core repulsion = 23070.676906 eV Total energy + Delta-G solvation = -4092.619675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17151 -39.98636 -38.34783 -37.67120 -36.43551 -35.81946 -34.65554 -32.77556 -30.58374 -29.96794 -29.50212 -27.56605 -26.29218 -25.31884 -24.84938 -22.92031 -22.36218 -20.73668 -19.38568 -18.55122 -17.65525 -17.24914 -16.51891 -16.43775 -16.13731 -16.01694 -15.49235 -15.42501 -14.92083 -14.55898 -14.32283 -14.21073 -13.71441 -13.41657 -13.16646 -12.79990 -12.55620 -12.52349 -12.34291 -12.20984 -11.85937 -11.65513 -11.56232 -11.12618 -11.10372 -11.07154 -10.86689 -10.79233 -10.73325 -10.45282 -10.29018 -10.21226 -9.23549 -8.94565 -8.78816 -8.48136 -8.09901 -7.75060 -6.12754 -4.20861 0.80041 0.93369 1.83763 1.95375 2.60556 2.89972 3.24726 3.29207 3.32916 3.36892 3.69356 3.97663 4.36133 4.41103 4.55305 4.75284 4.79590 4.83004 4.89986 5.10203 5.18392 5.19283 5.41251 5.50444 5.78717 5.94421 5.98752 6.10132 6.22261 6.38379 6.58554 6.67610 6.74111 6.93019 6.97370 7.08796 7.25836 7.38070 7.64476 7.82088 7.96681 8.08389 8.32899 8.58615 8.84591 9.45378 10.92795 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.002819 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.403006 B = 9929.262673 C =10956.769372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.110 3.890 4 C -0.180 4.180 5 C -0.087 4.087 6 C -0.052 4.052 7 Cl -0.067 7.067 8 C -0.080 4.080 9 C 0.135 3.865 10 N -0.641 5.641 11 C 0.509 3.491 12 O -0.501 6.501 13 C 0.494 3.506 14 O -0.533 6.533 15 N -0.551 5.551 16 C 0.079 3.921 17 C 0.255 3.745 18 H 0.066 0.934 19 C -0.147 4.147 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.901 3.099 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.428 0.572 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.013 0.987 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 15.688 5.503 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.107 4.107 6 C -0.079 4.079 7 Cl -0.038 7.038 8 C -0.101 4.101 9 C 0.039 3.961 10 N -0.289 5.289 11 C 0.292 3.708 12 O -0.375 6.375 13 C 0.275 3.725 14 O -0.411 6.411 15 N -0.282 5.282 16 C -0.064 4.064 17 C 0.155 3.845 18 H 0.084 0.916 19 C -0.205 4.205 20 C -0.566 4.566 21 H 0.081 0.919 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.728 3.272 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.179 0.821 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.331 15.563 5.399 23.196 hybrid contribution -0.191 -0.396 -0.766 0.883 sum -16.522 15.167 4.633 22.902 Atomic orbital electron populations 1.23120 0.77773 1.04456 1.01388 1.86117 1.21840 1.25834 1.88534 1.18858 0.90400 0.85385 0.99144 1.20963 1.00202 0.90904 1.07928 1.20803 0.92303 0.98022 0.99537 1.20563 0.92504 0.86801 1.08081 1.98367 1.81044 1.27300 1.97094 1.21138 1.02177 0.88358 0.98411 1.16890 0.86786 0.86850 1.05566 1.43068 1.19586 1.14028 1.52170 1.21011 0.81316 0.90653 0.77773 1.90679 1.67025 1.35497 1.44274 1.19530 0.83250 0.87491 0.82249 1.90732 1.67641 1.34449 1.48306 1.48261 1.17702 1.16071 1.46142 1.22006 1.01025 0.86511 0.96907 1.19182 0.87440 0.80145 0.97709 0.91574 1.22106 0.99747 1.02735 0.95952 1.21316 1.33544 1.09991 0.91732 0.91909 1.24885 0.95160 0.96091 0.97543 1.69883 1.34664 1.17603 1.30340 0.86394 0.77847 0.78770 0.84139 1.19712 1.20859 1.20853 0.92447 0.92417 0.87821 0.84089 0.84573 0.82055 0.73364 0.93259 0.90359 0.90331 0.88469 0.94761 0.96823 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.04 -19.67 -0.20 -3.53 16 3 C 0.11 1.24 6.70 -39.05 -0.26 0.98 16 4 C -0.18 -1.59 9.03 -39.47 -0.36 -1.95 16 5 C -0.09 -0.79 9.82 -39.52 -0.39 -1.18 16 6 C -0.05 -0.58 6.32 -39.51 -0.25 -0.83 16 7 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 8 C -0.08 -1.05 8.49 -39.37 -0.33 -1.38 16 9 C 0.13 1.80 6.34 -83.56 -0.53 1.27 16 10 N -0.64 -9.53 5.18 -10.19 -0.05 -9.58 16 11 C 0.51 8.87 7.62 -11.64 -0.09 8.79 16 12 O -0.50 -8.81 10.59 5.46 0.06 -8.75 16 13 C 0.49 10.35 7.72 -11.64 -0.09 10.26 16 14 O -0.53 -12.33 15.83 5.49 0.09 -12.24 16 15 N -0.55 -12.09 2.75 -175.82 -0.48 -12.57 16 16 C 0.08 1.48 8.20 59.84 0.49 1.97 16 17 C 0.25 6.43 2.62 -69.08 -0.18 6.25 16 18 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 19 C -0.15 -3.47 8.97 37.16 0.33 -3.14 16 20 C -0.53 -14.14 7.95 -34.45 -0.27 -14.41 16 21 H 0.06 1.68 7.44 -52.49 -0.39 1.29 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -24.63 11.32 55.43 0.63 -24.01 16 24 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 29 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.16 2.32 6.08 -52.49 -0.32 2.00 16 34 H 0.43 6.06 8.02 -40.82 -0.33 5.73 16 35 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 36 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 37 H 0.08 1.42 5.85 -51.93 -0.30 1.12 16 38 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 39 H 0.03 0.75 7.67 -51.93 -0.40 0.36 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -30.33 357.99 -6.86 -37.18 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.73 Total: 5.02 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.03 Total: 9.46 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.09 Total: -46.16 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.33 -6.86 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132322471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.941 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds