Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34508 * 124.44729 * 2 1 4 4 O 1.21428 * 125.71956 * 0.06224 * 3 2 1 5 5 C 1.48025 * 108.55771 * 180.02562 * 3 2 1 6 6 C 1.38602 * 134.10678 * 180.02562 * 5 3 2 7 7 C 1.38431 * 119.90040 * 179.71573 * 6 5 3 8 8 C 1.39488 * 120.30778 * 0.25908 * 7 6 5 9 9 C 1.47976 * 119.92458 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99909 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99939 * 0.02562 * 9 8 7 12 12 C 1.40495 * 119.99904 * 179.97438 * 11 9 8 13 13 C 1.40671 * 126.08702 * 359.68509 * 12 11 9 14 14 N 1.30904 * 108.38304 * 179.85255 * 13 12 11 15 15 N 1.40057 * 108.41707 * 0.41029 * 14 13 12 16 16 C 1.37311 * 126.06866 * 179.71684 * 15 14 13 17 17 H 1.07997 * 120.00607 * 180.02562 * 16 15 14 18 18 C 1.38998 * 119.99675 * 0.02562 * 16 15 14 19 19 N 1.31292 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99812 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46968 * 90.00752 * 20 18 16 22 22 H 1.48508 * 109.47177 * 210.00145 * 20 18 16 23 23 H 1.48497 * 109.47614 * 330.00327 * 20 18 16 24 24 C 1.35716 * 126.08504 * 180.02562 * 12 11 9 25 25 C 1.39789 * 120.15037 * 0.03991 * 8 7 6 26 26 C 1.38418 * 119.61584 * 359.97438 * 25 8 7 27 27 C 1.34519 * 124.44333 * 180.74283 * 2 1 3 28 28 O 1.21447 * 125.68756 * 359.30028 * 27 2 1 29 29 H 1.09000 * 109.47064 * 359.97053 * 1 2 3 30 30 H 1.09001 * 109.47416 * 119.97205 * 1 2 3 31 31 H 1.08999 * 109.46901 * 239.97106 * 1 2 3 32 32 H 1.08002 * 120.05373 * 359.97438 * 6 5 3 33 33 H 1.07995 * 119.84765 * 180.28005 * 7 6 5 34 34 H 0.97004 * 120.00146 * 359.97438 * 11 9 8 35 35 H 1.08001 * 125.80598 * 0.02784 * 13 12 11 36 36 H 0.96989 * 120.00236 * 179.97438 * 19 18 16 37 37 H 1.07998 * 126.25271 * 359.95459 * 24 12 11 38 38 H 1.07997 * 120.19025 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1092 0.0000 4 8 1.8139 2.2515 0.0011 5 6 3.6496 0.7039 -0.0006 6 6 4.8499 1.3970 -0.0004 7 6 6.0475 0.7029 0.0047 8 6 6.0527 -0.6920 0.0043 9 6 7.3379 -1.4254 0.0105 10 8 7.3440 -2.6410 0.0106 11 7 8.5017 -0.7457 0.0170 12 6 9.7219 -1.4420 0.0233 13 6 9.8780 -2.8400 0.0300 14 7 11.1584 -3.1124 0.0315 15 7 11.8677 -1.9047 0.0353 16 6 13.2342 -1.7698 0.0433 17 1 13.6797 -0.7860 0.0461 18 6 14.0440 -2.8994 0.0478 19 7 13.5025 -4.0954 0.0439 20 14 15.9029 -2.7158 0.0579 21 1 16.3879 -2.6673 1.4607 22 1 16.5186 -3.8739 -0.6387 23 1 16.2803 -1.4606 -0.6400 24 6 10.9597 -0.8857 0.0307 25 6 4.8466 -1.3986 -0.0021 26 6 3.6481 -0.7060 -0.0076 27 6 2.2259 -1.1093 -0.0144 28 8 1.8132 -2.2515 -0.0171 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3633 -0.5143 0.8897 32 1 4.8508 2.4770 -0.0001 33 1 6.9823 1.2438 0.0094 34 1 8.4968 0.2244 0.0172 35 1 9.0777 -3.5652 0.0307 36 1 14.0676 -4.8837 0.0467 37 1 11.1852 0.1705 0.0320 38 1 4.8498 -2.4785 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139501174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = 46.427689 kcal Electronic energy + Delta-G solvation = -27160.623748 eV Core-core repulsion = 22971.777132 eV Total energy + Delta-G solvation = -4188.846616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66314 -40.28255 -39.26793 -39.00878 -37.90872 -36.19458 -34.49669 -33.39699 -32.56227 -31.55144 -30.33217 -28.62861 -27.53321 -25.75665 -25.01881 -23.70592 -23.03478 -21.28176 -20.74531 -20.22773 -19.58658 -18.30287 -17.76599 -17.36332 -17.19041 -17.08759 -15.89574 -15.63595 -15.55925 -15.37782 -14.86074 -14.71774 -14.41142 -14.37361 -14.26072 -13.84263 -13.77875 -13.39596 -13.32776 -13.08136 -12.91116 -12.73439 -12.16069 -11.74748 -11.53544 -11.31963 -11.04169 -10.95165 -10.75917 -10.58318 -10.34255 -10.27706 -9.65555 -9.57100 -9.50304 -9.25638 -8.90210 -8.15254 -6.81752 -6.63108 -4.30511 -0.48882 0.50970 1.39946 1.89591 2.52367 2.69944 2.93899 2.99770 3.05945 3.07508 3.36761 3.40855 3.69369 3.79802 3.86651 4.16657 4.34542 4.44218 4.54203 4.63658 4.75456 4.81998 4.83333 4.95184 4.95558 5.02379 5.15408 5.36269 5.49693 5.59301 5.73687 6.06372 6.15287 6.20712 6.34806 6.76331 6.77321 6.85626 6.96625 7.13872 7.23689 7.77047 7.98998 8.16052 8.47990 8.67580 9.28348 9.57434 10.32610 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.001965 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.740235 B =14243.187493 C =14981.740678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.578 3.422 4 O -0.464 6.464 5 C -0.130 4.130 6 C -0.046 4.046 7 C -0.069 4.069 8 C -0.087 4.087 9 C 0.533 3.467 10 O -0.522 6.522 11 N -0.608 5.608 12 C -0.066 4.066 13 C -0.028 4.028 14 N -0.260 5.260 15 N -0.139 5.139 16 C -0.322 4.322 17 H 0.118 0.882 18 C 0.046 3.954 19 N -0.767 5.767 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.082 4.082 25 C 0.010 3.990 26 C -0.148 4.148 27 C 0.577 3.423 28 O -0.456 6.456 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.397 0.603 35 H 0.177 0.823 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.117 12.251 -0.080 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.324 5.324 3 C 0.367 3.633 4 O -0.336 6.336 5 C -0.134 4.134 6 C -0.065 4.065 7 C -0.088 4.088 8 C -0.091 4.091 9 C 0.319 3.681 10 O -0.400 6.400 11 N -0.250 5.250 12 C -0.171 4.171 13 C -0.203 4.203 14 N -0.091 5.091 15 N 0.094 4.906 16 C -0.454 4.454 17 H 0.135 0.865 18 C -0.172 4.172 19 N -0.393 5.393 20 Si 0.759 3.241 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.234 4.234 25 C -0.010 4.010 26 C -0.152 4.152 27 C 0.366 3.634 28 O -0.326 6.326 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.231 0.769 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.698 10.181 -0.079 20.418 hybrid contribution 0.074 1.377 0.000 1.379 sum -17.624 11.558 -0.079 21.076 Atomic orbital electron populations 1.21926 0.75130 1.04978 1.03991 1.46400 1.09418 1.08371 1.68188 1.18393 0.86473 0.84033 0.74409 1.90806 1.79321 1.19277 1.44160 1.20628 0.93857 0.94421 1.04526 1.20683 0.89155 1.01004 0.95617 1.21674 0.98692 0.93112 0.95339 1.20333 0.94182 0.93616 1.00963 1.17820 0.82823 0.87324 0.80140 1.90715 1.86445 1.12942 1.49881 1.42352 1.03873 1.08889 1.69879 1.17214 0.83237 0.91982 1.24707 1.24156 0.95419 0.93368 1.07367 1.78288 1.01837 1.03251 1.25747 1.44583 1.04891 1.02577 1.38541 1.19907 0.76741 0.95477 1.53286 0.86477 1.25668 1.01542 0.94565 0.95422 1.70204 1.36485 0.97868 1.34740 0.85809 0.80339 0.78881 0.79031 1.19535 1.20031 1.18759 1.21255 0.88158 0.93990 1.19950 1.20810 0.88019 1.01883 0.90245 1.20360 0.93708 0.94276 1.06820 1.18302 0.86320 0.84028 0.74710 1.90836 1.79239 1.19265 1.43272 0.88548 0.90140 0.90116 0.83355 0.83490 0.76868 0.80580 0.91316 0.83548 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.87 59.85 0.65 1.14 16 2 N -0.58 -5.37 3.02 -124.95 -0.38 -5.74 16 3 C 0.58 5.72 8.03 -12.37 -0.10 5.62 16 4 O -0.46 -5.38 17.43 5.43 0.09 -5.29 16 5 C -0.13 -1.22 6.41 -104.70 -0.67 -1.89 16 6 C -0.05 -0.34 10.08 -39.38 -0.40 -0.74 16 7 C -0.07 -0.55 9.54 -39.04 -0.37 -0.93 16 8 C -0.09 -1.00 5.88 -104.86 -0.62 -1.62 16 9 C 0.53 8.49 7.75 -12.27 -0.10 8.39 16 10 O -0.52 -10.43 13.48 5.32 0.07 -10.35 16 11 N -0.61 -9.66 5.41 -10.82 -0.06 -9.72 16 12 C -0.07 -1.42 6.90 -83.87 -0.58 -2.00 16 13 C -0.03 -0.69 10.85 -17.03 -0.18 -0.88 16 14 N -0.26 -7.33 10.39 30.80 0.32 -7.01 16 15 N -0.14 -3.67 3.74 -11.40 -0.04 -3.71 16 16 C -0.32 -8.20 10.25 -14.82 -0.15 -8.35 16 17 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 18 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 19 N -0.77 -20.89 11.81 55.50 0.66 -20.23 16 20 Si 0.94 18.33 29.55 -169.99 -5.02 13.31 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 25 C 0.01 0.12 9.63 -38.94 -0.37 -0.26 16 26 C -0.15 -1.56 6.39 -104.86 -0.67 -2.23 16 27 C 0.58 6.35 8.02 -12.45 -0.10 6.25 16 28 O -0.46 -6.11 17.80 5.41 0.10 -6.02 16 29 H 0.10 0.50 7.58 -51.93 -0.39 0.11 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.15 0.78 6.36 -52.49 -0.33 0.44 16 34 H 0.40 4.48 6.83 -40.82 -0.28 4.20 16 35 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 36 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.16 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -34.71 344.41 -5.97 -40.69 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -2.96 Total: 7.33 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.94 Total: 1.56 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.50 Total: -46.41 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.26 Total: -21.66 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.71 -5.97 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139501174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.114 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds