Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35981 * 116.99933 * 2 1 4 4 C 1.38727 * 119.98475 * 359.71631 * 3 2 1 5 5 C 1.38059 * 120.03613 * 180.28410 * 4 3 2 6 6 C 1.38934 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.39868 * 120.01640 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99793 * 213.34107 * 7 6 5 9 9 O 1.21389 * 120.00285 * 5.27676 * 8 7 6 10 10 C 1.49338 * 119.99684 * 185.27714 * 8 7 6 11 11 O 1.21359 * 120.00002 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99468 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99478 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47356 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47059 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00268 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99926 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46969 * 90.00551 * 20 18 16 22 22 H 1.48502 * 109.47309 * 210.00065 * 20 18 16 23 23 H 1.48498 * 109.47014 * 330.00342 * 20 18 16 24 24 C 1.38894 * 119.96877 * 0.02562 * 6 5 4 25 25 C 1.38167 * 119.96927 * 359.97438 * 24 6 5 26 26 Cl 1.73598 * 120.00552 * 179.97438 * 25 24 6 27 27 H 1.09005 * 109.47407 * 300.00875 * 1 2 3 28 28 H 1.09002 * 109.46988 * 60.00332 * 1 2 3 29 29 H 1.09000 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.98109 * 0.28618 * 4 3 2 31 31 H 1.07996 * 120.00608 * 179.97438 * 5 4 3 32 32 H 0.96993 * 120.00338 * 33.34089 * 7 6 5 33 33 H 0.96997 * 120.00411 * 0.02562 * 12 10 8 34 34 H 1.08997 * 109.47491 * 299.99935 * 13 12 10 35 35 H 1.09000 * 109.47467 * 60.00024 * 13 12 10 36 36 H 1.08997 * 109.46845 * 300.00315 * 14 13 12 37 37 H 1.09000 * 109.47330 * 60.00014 * 14 13 12 38 38 H 1.08996 * 109.46901 * 300.00212 * 15 14 13 39 39 H 1.09000 * 109.46932 * 59.99718 * 15 14 13 40 40 H 0.96998 * 119.99899 * 179.97438 * 19 18 16 41 41 H 1.08008 * 120.01835 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2904 2.3749 -0.0059 5 6 1.9161 3.6055 -0.0119 6 6 3.3034 3.6794 -0.0114 7 7 3.9377 4.9260 -0.0168 8 6 5.1128 5.0814 -0.6584 9 8 5.5735 4.1675 -1.3111 10 6 5.8481 6.3780 -0.5661 11 8 5.3873 7.2918 0.0861 12 7 7.0234 6.5331 -1.2072 13 6 7.7444 7.8052 -1.1172 14 6 9.0378 7.7170 -1.9299 15 6 9.7911 9.0453 -1.8353 16 6 11.0653 8.9582 -2.6353 17 1 11.3128 8.0468 -3.1591 18 6 11.9146 10.0424 -2.6993 19 7 11.6130 11.1526 -2.0619 20 14 13.4944 9.9342 -3.6903 21 1 13.2342 10.3704 -5.0857 22 1 14.5228 10.8147 -3.0801 23 1 13.9819 8.5315 -3.6928 24 6 4.0603 2.5148 -0.0054 25 6 3.4328 1.2839 0.0005 26 17 4.3778 -0.1723 0.0073 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2119 2.3177 -0.0059 31 1 1.3272 4.5108 -0.0169 32 1 3.5319 5.6787 0.4410 33 1 7.3915 5.8028 -1.7288 34 1 7.1202 8.6056 -1.5143 35 1 7.9836 8.0143 -0.0745 36 1 9.6622 6.9165 -1.5332 37 1 8.7982 7.5082 -2.9725 38 1 9.1668 9.8460 -2.2317 39 1 10.0307 9.2537 -0.7926 40 1 12.2106 11.9152 -2.1066 41 1 5.1389 2.5714 -0.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171475079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -92.730734 kcal Electronic energy + Delta-G solvation = -25319.408225 eV Core-core repulsion = 21225.634741 eV Total energy + Delta-G solvation = -4093.773484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37539 -40.38949 -39.02640 -37.76122 -36.78361 -35.83780 -34.71388 -33.36262 -31.44176 -31.29656 -29.87351 -27.87351 -27.18160 -25.01666 -23.50358 -23.10023 -21.98137 -20.85576 -20.27140 -18.96237 -18.62744 -17.82566 -16.87781 -16.53316 -16.37645 -16.25790 -16.08771 -15.30839 -15.24288 -14.94233 -14.51138 -14.47199 -14.26963 -13.98088 -13.80012 -13.50328 -13.46007 -12.68664 -12.33942 -12.09006 -11.93893 -11.89567 -11.85282 -11.81955 -11.60593 -11.18367 -10.93159 -10.80296 -10.62543 -10.41130 -9.94211 -9.92514 -9.45966 -9.30032 -9.16353 -9.08809 -8.39881 -8.25448 -6.04736 -4.07848 0.56335 0.67182 1.33346 1.78906 2.11517 2.72418 2.93257 3.21013 3.29972 3.36491 3.39305 3.45268 4.20142 4.29182 4.35228 4.43017 4.59009 4.65459 4.66482 4.88623 4.98282 5.11342 5.25998 5.31369 5.52301 5.58188 5.63321 5.64535 5.73821 6.02373 6.15403 6.19325 6.49198 6.58654 6.72661 6.75092 6.91014 7.22423 7.50652 7.58934 7.70094 7.88850 7.93642 8.34376 8.98588 9.56731 11.06457 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.001689 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.264915 B =16572.777238 C =17486.915746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.124 3.876 4 C -0.177 4.177 5 C -0.095 4.095 6 C 0.122 3.878 7 N -0.645 5.645 8 C 0.508 3.492 9 O -0.497 6.497 10 C 0.504 3.496 11 O -0.522 6.522 12 N -0.687 5.687 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.074 4.074 25 C -0.049 4.049 26 Cl -0.049 7.049 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.426 0.574 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.848 -20.924 6.288 33.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.077 3.923 4 C -0.197 4.197 5 C -0.115 4.115 6 C 0.027 3.973 7 N -0.293 5.293 8 C 0.291 3.709 9 O -0.370 6.370 10 C 0.283 3.717 11 O -0.399 6.399 12 N -0.339 5.339 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.095 4.095 25 C -0.077 4.077 26 Cl -0.020 7.020 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.264 0.736 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.529 -21.006 6.319 33.659 hybrid contribution 0.679 0.141 -0.579 0.904 sum -24.850 -20.865 5.740 32.952 Atomic orbital electron populations 1.23134 0.77963 1.04391 1.01509 1.86184 1.21581 1.25660 1.88347 1.18678 0.90411 0.85318 0.97911 1.20980 1.00328 0.90851 1.07532 1.20816 0.92184 0.98383 1.00113 1.17405 0.91194 0.84640 1.04022 1.43101 1.21854 1.11389 1.52913 1.20589 0.81723 0.89295 0.79333 1.90805 1.66173 1.42070 1.37961 1.19705 0.82947 0.87410 0.81670 1.90785 1.67166 1.41493 1.40447 1.46078 1.20343 1.18294 1.49193 1.21893 0.93912 0.83045 1.02012 1.21939 0.93238 1.02537 0.98407 1.19034 0.94520 0.90097 0.97686 1.21196 1.05223 0.98999 1.30773 0.92551 1.25023 0.98274 0.95421 0.95695 1.69963 1.37530 1.03205 1.42558 0.86570 0.83113 0.77994 0.80180 1.20647 1.21198 1.19863 1.20909 1.01657 0.88566 0.98361 1.19919 0.88646 0.88889 1.10213 1.98381 1.71636 1.35014 1.96953 0.92390 0.92378 0.87897 0.83925 0.84290 0.73588 0.75170 0.90925 0.90902 0.92356 0.92369 0.96177 0.96158 0.92910 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.51 9.95 -19.68 -0.20 -2.70 16 3 C 0.12 1.10 6.68 -39.18 -0.26 0.83 16 4 C -0.18 -1.18 9.03 -39.47 -0.36 -1.54 16 5 C -0.09 -0.66 9.96 -39.39 -0.39 -1.05 16 6 C 0.12 1.14 6.28 -83.69 -0.53 0.62 16 7 N -0.64 -6.13 5.33 -10.27 -0.05 -6.19 16 8 C 0.51 6.13 7.62 -11.64 -0.09 6.04 16 9 O -0.50 -6.83 14.16 5.46 0.08 -6.75 16 10 C 0.50 6.91 7.88 -11.64 -0.09 6.81 16 11 O -0.52 -8.16 16.48 5.49 0.09 -8.07 16 12 N -0.69 -9.60 5.55 -60.77 -0.34 -9.94 16 13 C 0.11 1.85 5.67 -4.04 -0.02 1.82 16 14 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 C -0.07 -0.79 8.43 -39.36 -0.33 -1.13 16 25 C -0.05 -0.51 6.33 -39.39 -0.25 -0.76 16 26 Cl -0.05 -0.52 28.50 -51.86 -1.48 -2.00 16 27 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 28 H 0.06 0.17 7.65 -51.93 -0.40 -0.23 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.14 0.54 6.29 -52.49 -0.33 0.21 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.43 3.25 8.30 -40.82 -0.34 2.91 16 33 H 0.41 5.22 7.94 -40.82 -0.32 4.90 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.15 1.80 6.41 -52.48 -0.34 1.46 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -32.67 371.98 -7.64 -40.32 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.05 Total: 1.54 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.02 Total: -2.46 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.34 Total: -41.79 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.03 Total: -17.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.67 -7.64 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.415 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds