Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35986 * 116.99765 * 2 1 4 4 C 1.38539 * 120.06975 * 359.72173 * 3 2 1 5 5 C 1.38241 * 120.02803 * 180.25724 * 4 3 2 6 6 C 1.38407 * 120.18342 * 0.03939 * 5 4 3 7 7 Cl 1.73600 * 119.92670 * 179.97438 * 6 5 4 8 8 C 1.38266 * 120.14494 * 359.95937 * 6 5 4 9 9 C 1.38793 * 119.96820 * 0.02562 * 8 6 5 10 10 N 1.39869 * 120.09223 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99737 * 24.82725 * 10 9 8 12 12 O 1.21387 * 120.00170 * 5.52755 * 11 10 9 13 13 C 1.49337 * 119.99511 * 185.53373 * 11 10 9 14 14 O 1.21351 * 120.00446 * 359.97438 * 13 11 10 15 15 N 1.34783 * 119.99511 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99813 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.46929 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46849 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46884 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00614 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00135 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00252 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47003 * 119.99647 * 23 21 19 26 26 H 1.48496 * 109.47436 * 239.99901 * 23 21 19 27 27 H 1.09005 * 109.46397 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47091 * 300.00086 * 1 2 3 29 29 H 1.09000 * 109.46998 * 60.00733 * 1 2 3 30 30 H 1.07996 * 119.98759 * 0.25516 * 4 3 2 31 31 H 1.08005 * 119.91021 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.01249 * 180.02562 * 8 6 5 33 33 H 0.97000 * 120.00367 * 204.82740 * 10 9 8 34 34 H 0.97002 * 120.00176 * 359.97438 * 15 13 11 35 35 H 1.08992 * 109.47173 * 299.99766 * 16 15 13 36 36 H 1.08995 * 109.46970 * 60.00164 * 16 15 13 37 37 H 1.08997 * 109.47093 * 300.00386 * 17 16 15 38 38 H 1.09000 * 109.47092 * 59.99850 * 17 16 15 39 39 H 1.09006 * 109.47254 * 299.99742 * 18 17 16 40 40 H 1.09000 * 109.47541 * 59.99948 * 18 17 16 41 41 H 0.96997 * 120.00465 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3744 -0.0058 5 6 1.9217 3.6057 -0.0112 6 6 3.3036 3.6816 -0.0116 7 17 4.0859 5.2314 -0.0190 8 6 4.0625 2.5258 -0.0058 9 6 3.4380 1.2864 -0.0001 10 7 4.2031 0.1156 0.0053 11 6 5.4586 0.1333 0.4953 12 8 5.8901 1.1377 1.0229 13 6 6.3187 -1.0829 0.3889 14 8 5.8872 -2.0871 -0.1383 15 7 7.5740 -1.0653 0.8793 16 6 8.4177 -2.2585 0.7755 17 6 9.7834 -1.9737 1.4039 18 6 10.6646 -3.2196 1.2949 19 6 12.0095 -2.9393 1.9144 20 1 12.2150 -1.9697 2.3434 21 6 12.9774 -3.9211 1.9346 22 7 12.7268 -5.1023 1.4135 23 14 14.6447 -3.5734 2.7018 24 1 14.6729 -2.1799 3.2142 25 1 14.8798 -4.5176 3.8237 26 1 15.7065 -3.7466 1.6783 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.2147 2.3190 -0.0062 31 1 1.3326 4.5110 -0.0153 32 1 5.1408 2.5876 -0.0057 33 1 3.8302 -0.7091 -0.3436 34 1 7.9189 -0.2627 1.3011 35 1 7.9417 -3.0869 1.3000 36 1 8.5488 -2.5205 -0.2743 37 1 10.2592 -1.1454 0.8791 38 1 9.6526 -1.7114 2.4538 39 1 10.1889 -4.0482 1.8196 40 1 10.7954 -3.4815 0.2450 41 1 13.4078 -5.7929 1.4273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171475290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -114.155804 kcal Electronic energy + Delta-G solvation = -25626.440876 eV Core-core repulsion = 21531.738331 eV Total energy + Delta-G solvation = -4094.702545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.39429 -41.15166 -39.85249 -38.61694 -37.41676 -37.14676 -36.05627 -35.17505 -33.07165 -31.51192 -30.86200 -29.00713 -28.14708 -26.53374 -24.81611 -23.58916 -23.12738 -22.38615 -21.34859 -20.08769 -19.15883 -18.63916 -18.39545 -17.79664 -17.42791 -17.08602 -16.79660 -16.57965 -16.39110 -16.21310 -16.06844 -15.47478 -15.14512 -15.06889 -14.68846 -14.36917 -14.29001 -13.77985 -13.54839 -13.50718 -13.44638 -13.02569 -12.79016 -12.73719 -12.54696 -12.37714 -12.34015 -12.00661 -11.94140 -11.70666 -11.56450 -11.48765 -11.21717 -10.76996 -10.55417 -10.35112 -9.78106 -8.97966 -8.19651 -6.30213 -0.28340 0.07188 0.41727 1.00844 1.17096 1.41571 1.42265 1.55125 1.92631 2.13611 2.40195 2.46810 2.50609 3.14388 3.21928 3.66167 3.82782 4.02968 4.07084 4.14694 4.18137 4.36235 4.44978 4.51436 4.52432 4.57659 4.79545 4.83389 4.91533 5.01391 5.03334 5.13626 5.15139 5.19737 5.43781 5.52048 5.71112 5.72740 5.84831 6.15651 6.21044 6.24292 6.53105 6.77023 6.87061 7.39087 8.92414 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.001891 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.995653 B =14807.248536 C =16288.690891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.167 4.167 5 C -0.076 4.076 6 C -0.063 4.063 7 Cl -0.067 7.067 8 C -0.101 4.101 9 C 0.105 3.895 10 N -0.624 5.624 11 C 0.514 3.486 12 O -0.512 6.512 13 C 0.508 3.492 14 O -0.542 6.542 15 N -0.682 5.682 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.540 4.540 20 H 0.064 0.936 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.433 0.567 34 H 0.421 0.579 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.346 18.536 -4.018 35.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.063 3.937 4 C -0.186 4.186 5 C -0.095 4.095 6 C -0.090 4.090 7 Cl -0.038 7.038 8 C -0.122 4.122 9 C 0.010 3.990 10 N -0.270 5.270 11 C 0.296 3.704 12 O -0.388 6.388 13 C 0.288 3.712 14 O -0.420 6.420 15 N -0.334 5.334 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.578 4.578 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.196 0.804 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.272 0.728 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.063 18.249 -4.053 35.401 hybrid contribution 1.092 -0.217 0.280 1.149 sum -28.971 18.032 -3.773 34.332 Atomic orbital electron populations 1.23472 0.75310 1.05989 1.03037 1.86062 1.24375 1.25629 1.88397 1.18847 0.89530 0.86587 0.98731 1.21377 1.01910 0.89667 1.05631 1.21204 0.91490 0.99534 0.97241 1.20700 0.93450 0.86349 1.08504 1.98374 1.81279 1.27061 1.97099 1.21059 1.01769 0.89273 1.00120 1.17035 0.87843 0.86045 1.08086 1.42865 1.12644 1.12545 1.58977 1.20151 0.82924 0.88412 0.78872 1.90749 1.73041 1.33546 1.41421 1.19909 0.83345 0.87843 0.80120 1.90776 1.73410 1.33968 1.43823 1.45854 1.12324 1.17778 1.57431 1.21522 0.90330 0.86238 1.01513 1.21644 0.92499 0.99611 1.00656 1.18940 0.93788 0.93032 0.95585 1.21707 0.99173 0.98966 1.37993 0.91782 1.25984 1.03096 0.94900 0.96063 1.70098 1.35749 1.04754 1.46720 0.85395 0.78898 0.78678 0.78046 1.18464 1.20565 1.20561 0.86557 0.90949 0.90581 0.80388 0.81681 0.83648 0.72780 0.74159 0.91485 0.91489 0.91390 0.91403 0.98475 0.98466 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -4.66 9.91 -93.39 -0.93 -5.59 16 3 C 0.11 1.75 6.70 22.61 0.15 1.90 16 4 C -0.17 -1.72 9.03 22.34 0.20 -1.52 16 5 C -0.08 -0.90 9.82 22.31 0.22 -0.68 16 6 C -0.06 -1.11 6.32 22.32 0.14 -0.97 16 7 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 8 C -0.10 -2.21 8.50 22.41 0.19 -2.02 16 9 C 0.10 2.18 6.44 38.26 0.25 2.43 16 10 N -0.62 -13.95 5.27 -304.50 -1.60 -15.56 16 11 C 0.51 13.35 7.69 87.23 0.67 14.02 16 12 O -0.51 -14.49 13.64 -3.36 -0.05 -14.54 16 13 C 0.51 14.67 7.89 87.23 0.69 15.36 16 14 O -0.54 -17.99 16.48 -3.25 -0.05 -18.04 16 15 N -0.68 -19.42 5.55 -464.54 -2.58 -21.99 16 16 C 0.13 4.24 5.67 86.38 0.49 4.73 16 17 C -0.11 -4.03 5.27 30.59 0.16 -3.86 16 18 C 0.02 1.23 4.97 29.85 0.15 1.38 16 19 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 22 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 23 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.07 0.18 7.67 -2.39 -0.02 0.16 16 29 H 0.08 0.13 7.65 -2.39 -0.02 0.11 16 30 H 0.18 0.52 6.30 -2.91 -0.02 0.51 16 31 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.15 3.67 5.79 -2.91 -0.02 3.65 16 33 H 0.43 8.92 7.82 -92.71 -0.72 8.19 16 34 H 0.42 10.63 7.94 -92.71 -0.74 9.89 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -70.11 370.90 1.78 -68.33 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.36 Total: 16.35 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.12 Total: 2.48 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -3.90 Total: -93.69 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.02 Total: -38.17 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -70.11 1.78 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.825 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds