Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35923 * 116.99986 * 2 1 4 4 C 1.38580 * 120.01976 * 359.73096 * 3 2 1 5 5 C 1.38831 * 119.88395 * 179.81013 * 4 3 2 6 6 N 1.39755 * 120.03974 * 180.18359 * 5 4 3 7 7 C 1.34774 * 119.99948 * 213.64944 * 6 5 4 8 8 O 1.21373 * 120.00412 * 5.27509 * 7 6 5 9 9 C 1.49349 * 119.99539 * 185.27602 * 7 6 5 10 10 O 1.21356 * 120.00543 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99857 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00462 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46955 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46856 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00574 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46945 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46834 * 120.00088 * 19 17 15 22 22 H 1.48496 * 109.47536 * 239.99970 * 19 17 15 23 23 C 1.38966 * 119.92188 * 0.46125 * 5 4 3 24 24 C 1.38125 * 120.04357 * 359.76610 * 23 5 4 25 25 C 1.38298 * 120.11449 * 0.02562 * 24 23 5 26 26 Cl 1.73604 * 119.96160 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.47278 * 59.99628 * 1 2 3 28 28 H 1.08998 * 109.46849 * 299.99002 * 1 2 3 29 29 H 1.09007 * 109.46611 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.05931 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99973 * 33.64389 * 6 5 4 32 32 H 0.97002 * 120.00304 * 0.02562 * 11 9 7 33 33 H 1.09001 * 109.46981 * 300.00554 * 12 11 9 34 34 H 1.09005 * 109.46815 * 59.99665 * 12 11 9 35 35 H 1.09000 * 109.47501 * 300.00880 * 13 12 11 36 36 H 1.09005 * 109.46757 * 60.00724 * 13 12 11 37 37 H 1.08997 * 109.47288 * 300.00080 * 14 13 12 38 38 H 1.09000 * 109.47208 * 60.00460 * 14 13 12 39 39 H 0.96997 * 120.00289 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.97722 * 179.74461 * 23 5 4 41 41 H 1.08002 * 119.93545 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3736 -0.0056 5 6 1.9249 3.6091 -0.0016 6 7 1.1674 4.7835 -0.0034 7 6 1.6212 5.8771 -0.6471 8 8 2.6395 5.8155 -1.3046 9 6 0.8710 7.1650 -0.5511 10 8 -0.1474 7.2266 0.1059 11 7 1.3251 8.2589 -1.1944 12 6 0.5890 9.5221 -1.1008 13 6 1.3127 10.5957 -1.9158 14 6 0.5443 11.9151 -1.8175 15 6 1.2568 12.9724 -2.6208 16 1 2.1670 12.7281 -3.1484 17 6 0.7474 14.2522 -2.6815 18 7 -0.3601 14.5503 -2.0380 19 14 1.6310 15.5631 -3.6767 20 1 2.8446 14.9769 -4.3004 21 1 0.7261 16.0724 -4.7384 22 1 2.0244 16.6819 -2.7830 23 6 3.3130 3.6766 -0.0017 24 6 4.0618 2.5160 -0.0008 25 6 3.4328 1.2844 -0.0005 26 17 4.3779 -0.1719 -0.0001 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 0.2132 2.3185 -0.0096 31 1 0.3149 4.8114 0.4585 32 1 2.1389 8.2097 -1.7199 33 1 -0.4187 9.3853 -1.4930 34 1 0.5336 9.8339 -0.0578 35 1 2.3204 10.7324 -1.5232 36 1 1.3684 10.2841 -2.9589 37 1 -0.4634 11.7787 -2.2099 38 1 0.4890 12.2265 -0.7744 39 1 -0.7183 15.4508 -2.0803 40 1 3.8064 4.6373 -0.0027 41 1 5.1405 2.5706 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192884510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -93.657507 kcal Electronic energy + Delta-G solvation = -25330.014178 eV Core-core repulsion = 21236.200506 eV Total energy + Delta-G solvation = -4093.813672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45965 -40.40970 -39.03835 -37.79761 -36.81584 -35.89850 -34.91920 -33.40228 -31.34270 -30.87896 -30.24206 -27.84989 -27.25237 -25.23418 -23.34926 -23.06181 -22.11379 -20.90082 -20.32859 -19.13343 -18.55216 -17.24307 -16.95974 -16.67918 -16.42799 -16.29145 -16.09355 -15.97059 -15.29985 -14.97125 -14.60164 -14.48593 -14.20192 -14.00738 -13.80066 -13.56416 -13.07095 -12.59170 -12.37113 -12.11737 -11.99765 -11.95070 -11.89529 -11.80323 -11.79837 -11.16659 -10.96774 -10.83529 -10.62376 -10.49554 -9.97485 -9.96362 -9.48690 -9.17775 -9.15875 -9.12582 -8.42422 -8.40340 -6.06948 -4.10090 0.43455 0.83508 1.26784 1.80993 2.02051 2.69070 2.89574 3.19703 3.27364 3.34596 3.35885 3.39403 4.18364 4.26057 4.40934 4.43455 4.63545 4.67041 4.69289 4.87800 4.97259 5.03490 5.27979 5.29271 5.48550 5.59750 5.62803 5.70272 5.81058 5.98867 6.10569 6.16720 6.45899 6.53730 6.66745 6.72233 6.88016 7.15454 7.43243 7.56686 7.67444 7.83241 7.91326 8.32004 8.96587 9.54667 11.04282 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.001599 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.435103 B =17506.788334 C =18248.987758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.158 3.842 4 C -0.223 4.223 5 C 0.193 3.807 6 N -0.649 5.649 7 C 0.511 3.489 8 O -0.492 6.492 9 C 0.503 3.497 10 O -0.521 6.521 11 N -0.687 5.687 12 C 0.113 3.887 13 C -0.123 4.123 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.146 4.146 24 C -0.050 4.050 25 C -0.084 4.084 26 Cl -0.058 7.058 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.426 0.574 32 H 0.412 0.588 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.147 0.853 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -30.728 6.192 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.111 3.889 4 C -0.244 4.244 5 C 0.098 3.902 6 N -0.296 5.296 7 C 0.293 3.707 8 O -0.365 6.365 9 C 0.282 3.718 10 O -0.398 6.398 11 N -0.338 5.338 12 C -0.009 4.009 13 C -0.161 4.161 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.166 4.166 24 C -0.069 4.069 25 C -0.112 4.112 26 Cl -0.029 7.029 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.264 0.736 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.165 0.835 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.947 -30.792 6.214 31.660 hybrid contribution 0.100 0.830 -0.560 1.006 sum 4.047 -29.962 5.654 30.758 Atomic orbital electron populations 1.23168 0.77736 1.04517 1.01723 1.86186 1.21797 1.25428 1.88098 1.18306 0.90260 0.84681 0.95669 1.20865 1.00603 0.90185 1.12793 1.17472 0.90875 0.84818 0.97024 1.43212 1.24363 1.09372 1.52656 1.20595 0.85579 0.85217 0.79270 1.90801 1.23775 1.84408 1.37478 1.19690 0.85596 0.84725 0.81773 1.90790 1.23982 1.84774 1.40260 1.46084 1.28966 1.09900 1.48890 1.21906 0.96025 0.80904 1.02044 1.21939 0.99794 0.95983 0.98392 1.19040 0.95429 0.89215 0.97693 1.21230 1.09682 0.94713 1.30510 0.92492 1.25029 0.95021 0.98696 0.95709 1.69967 1.20549 1.20248 1.42481 0.86517 0.79724 0.81686 0.79954 1.19718 1.20986 1.20977 1.21072 0.91736 0.99641 1.04178 1.20809 1.00797 0.89015 0.96303 1.20167 0.88685 0.88990 1.13351 1.98366 1.71572 1.35794 1.97162 0.92253 0.92240 0.87746 0.83912 0.73585 0.75164 0.90894 0.90875 0.92345 0.92356 0.96168 0.96154 0.92945 0.83494 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.48 9.95 -19.50 -0.19 -2.67 16 3 C 0.16 1.40 6.68 -39.22 -0.26 1.14 16 4 C -0.22 -1.76 8.95 -39.24 -0.35 -2.11 16 5 C 0.19 1.79 6.27 -83.76 -0.53 1.26 16 6 N -0.65 -5.99 5.32 -10.31 -0.05 -6.05 16 7 C 0.51 5.90 7.62 -11.63 -0.09 5.81 16 8 O -0.49 -6.40 14.16 5.48 0.08 -6.33 16 9 C 0.50 6.67 7.89 -11.63 -0.09 6.58 16 10 O -0.52 -7.96 16.48 5.49 0.09 -7.87 16 11 N -0.69 -9.27 5.55 -60.76 -0.34 -9.61 16 12 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 13 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.15 -1.39 8.65 -39.35 -0.34 -1.73 16 24 C -0.05 -0.43 9.82 -39.60 -0.39 -0.82 16 25 C -0.08 -0.78 6.33 -39.33 -0.25 -1.02 16 26 Cl -0.06 -0.52 28.49 -51.86 -1.48 -2.00 16 27 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 28 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.14 0.79 6.30 -52.49 -0.33 0.46 16 31 H 0.43 3.19 8.30 -40.82 -0.34 2.85 16 32 H 0.41 5.00 7.94 -40.82 -0.32 4.67 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.15 1.48 6.41 -52.49 -0.34 1.14 16 41 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -32.04 371.98 -7.64 -39.68 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.05 Total: 1.66 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.02 Total: -3.07 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.34 Total: -41.15 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.03 Total: -16.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.04 -7.64 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192884510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.979 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds