Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35923 * 116.99986 * 2 1 4 4 C 1.38580 * 120.01976 * 359.73096 * 3 2 1 5 5 C 1.38831 * 119.88395 * 179.81013 * 4 3 2 6 6 N 1.39755 * 120.03974 * 180.18359 * 5 4 3 7 7 C 1.34774 * 119.99948 * 213.64944 * 6 5 4 8 8 O 1.21373 * 120.00412 * 5.27509 * 7 6 5 9 9 C 1.49349 * 119.99539 * 185.27602 * 7 6 5 10 10 O 1.21356 * 120.00543 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99857 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00462 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46955 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46856 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00574 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46945 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46834 * 120.00088 * 19 17 15 22 22 H 1.48496 * 109.47536 * 239.99970 * 19 17 15 23 23 C 1.38966 * 119.92188 * 0.46125 * 5 4 3 24 24 C 1.38125 * 120.04357 * 359.76610 * 23 5 4 25 25 C 1.38298 * 120.11449 * 0.02562 * 24 23 5 26 26 Cl 1.73604 * 119.96160 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.47278 * 59.99628 * 1 2 3 28 28 H 1.08998 * 109.46849 * 299.99002 * 1 2 3 29 29 H 1.09007 * 109.46611 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.05931 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99973 * 33.64389 * 6 5 4 32 32 H 0.97002 * 120.00304 * 0.02562 * 11 9 7 33 33 H 1.09001 * 109.46981 * 300.00554 * 12 11 9 34 34 H 1.09005 * 109.46815 * 59.99665 * 12 11 9 35 35 H 1.09000 * 109.47501 * 300.00880 * 13 12 11 36 36 H 1.09005 * 109.46757 * 60.00724 * 13 12 11 37 37 H 1.08997 * 109.47288 * 300.00080 * 14 13 12 38 38 H 1.09000 * 109.47208 * 60.00460 * 14 13 12 39 39 H 0.96997 * 120.00289 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.97722 * 179.74461 * 23 5 4 41 41 H 1.08002 * 119.93545 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3736 -0.0056 5 6 1.9249 3.6091 -0.0016 6 7 1.1674 4.7835 -0.0034 7 6 1.6212 5.8771 -0.6471 8 8 2.6395 5.8155 -1.3046 9 6 0.8710 7.1650 -0.5511 10 8 -0.1474 7.2266 0.1059 11 7 1.3251 8.2589 -1.1944 12 6 0.5890 9.5221 -1.1008 13 6 1.3127 10.5957 -1.9158 14 6 0.5443 11.9151 -1.8175 15 6 1.2568 12.9724 -2.6208 16 1 2.1670 12.7281 -3.1484 17 6 0.7474 14.2522 -2.6815 18 7 -0.3601 14.5503 -2.0380 19 14 1.6310 15.5631 -3.6767 20 1 2.8446 14.9769 -4.3004 21 1 0.7261 16.0724 -4.7384 22 1 2.0244 16.6819 -2.7830 23 6 3.3130 3.6766 -0.0017 24 6 4.0618 2.5160 -0.0008 25 6 3.4328 1.2844 -0.0005 26 17 4.3779 -0.1719 -0.0001 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 0.2132 2.3185 -0.0096 31 1 0.3149 4.8114 0.4585 32 1 2.1389 8.2097 -1.7199 33 1 -0.4187 9.3853 -1.4930 34 1 0.5336 9.8339 -0.0578 35 1 2.3204 10.7324 -1.5232 36 1 1.3684 10.2841 -2.9589 37 1 -0.4634 11.7787 -2.2099 38 1 0.4890 12.2265 -0.7744 39 1 -0.7183 15.4508 -2.0803 40 1 3.8064 4.6373 -0.0027 41 1 5.1405 2.5706 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192884510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -115.227097 kcal Electronic energy + Delta-G solvation = -25330.949506 eV Core-core repulsion = 21236.200506 eV Total energy + Delta-G solvation = -4094.748999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31679 -41.16237 -39.98998 -38.50891 -37.54728 -37.17532 -35.85824 -35.15171 -33.06505 -31.52811 -30.91664 -29.02457 -28.15900 -26.47951 -24.74987 -23.71819 -23.08334 -22.37661 -21.38230 -19.99603 -19.41115 -18.50760 -18.06199 -17.65086 -17.49704 -17.09797 -16.81876 -16.78716 -16.53845 -16.28455 -16.13679 -15.27702 -15.11772 -15.08191 -14.61013 -14.30344 -14.28625 -13.78217 -13.75063 -13.53280 -13.20851 -12.91902 -12.78785 -12.72200 -12.55099 -12.42858 -12.37286 -12.28607 -11.84494 -11.69835 -11.56883 -11.25260 -11.19566 -10.81012 -10.54946 -10.33866 -9.78921 -9.09911 -8.19350 -6.29846 -0.33617 0.17999 0.36719 1.02336 1.18941 1.41829 1.42863 1.55336 1.93108 2.18061 2.39542 2.45793 2.48904 3.14898 3.21930 3.63184 3.88754 3.97492 4.07785 4.15916 4.19181 4.31580 4.40033 4.40724 4.53269 4.65136 4.76210 4.84318 4.92508 4.93653 5.03803 5.11120 5.15921 5.20558 5.47806 5.52878 5.71894 5.76338 5.85403 6.14166 6.20707 6.24832 6.52492 6.77716 6.87603 7.39642 8.92562 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.001599 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.435103 B =17506.788334 C =18248.987758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.153 3.847 4 C -0.214 4.214 5 C 0.180 3.820 6 N -0.634 5.634 7 C 0.520 3.480 8 O -0.508 6.508 9 C 0.508 3.492 10 O -0.541 6.541 11 N -0.682 5.682 12 C 0.127 3.873 13 C -0.107 4.107 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.157 4.157 24 C -0.049 4.049 25 C -0.096 4.096 26 Cl -0.060 7.060 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.434 0.566 32 H 0.421 0.579 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.140 0.860 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -31.878 5.740 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.105 3.895 4 C -0.235 4.235 5 C 0.086 3.914 6 N -0.282 5.282 7 C 0.302 3.698 8 O -0.381 6.381 9 C 0.288 3.712 10 O -0.419 6.419 11 N -0.334 5.334 12 C 0.004 3.996 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.177 4.177 24 C -0.068 4.068 25 C -0.124 4.124 26 Cl -0.031 7.031 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.185 0.815 31 H 0.275 0.725 32 H 0.259 0.741 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.158 0.842 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.527 -31.984 5.767 32.814 hybrid contribution -0.127 1.078 -0.378 1.150 sum 4.400 -30.906 5.389 31.679 Atomic orbital electron populations 1.23466 0.75832 1.06080 1.02703 1.86179 1.23828 1.25139 1.87906 1.18441 0.90319 0.85284 0.95411 1.21032 1.01781 0.89206 1.11489 1.17588 0.90883 0.85028 0.97922 1.43064 1.24516 1.08770 1.51829 1.20122 0.85154 0.84991 0.79557 1.90806 1.24343 1.84524 1.38474 1.19920 0.85242 0.85137 0.80948 1.90784 1.24921 1.85190 1.41027 1.45865 1.29115 1.09217 1.49243 1.21514 0.95602 0.81387 1.01088 1.21644 0.99456 0.93794 0.99563 1.18946 0.94933 0.91887 0.95653 1.21716 1.09997 0.95638 1.30551 0.91772 1.25963 0.95790 1.01283 0.96885 1.70096 1.22192 1.20902 1.44086 0.85415 0.78784 0.78614 0.78317 1.18461 1.20619 1.20605 1.21098 0.92118 0.99639 1.04881 1.20948 1.01598 0.88540 0.95729 1.20370 0.89193 0.89105 1.13738 1.98361 1.71649 1.35920 1.97188 0.91461 0.90983 0.86073 0.81507 0.72530 0.74147 0.91457 0.91464 0.91383 0.91414 0.98452 0.98442 0.92828 0.84222 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.68 9.95 -92.68 -0.92 -5.60 16 3 C 0.15 2.48 6.68 22.50 0.15 2.63 16 4 C -0.21 -2.96 8.95 22.49 0.20 -2.76 16 5 C 0.18 3.07 6.27 38.19 0.24 3.31 16 6 N -0.63 -10.75 5.32 -304.87 -1.62 -12.37 16 7 C 0.52 11.35 7.62 87.24 0.66 12.02 16 8 O -0.51 -12.63 14.16 -3.32 -0.05 -12.67 16 9 C 0.51 12.91 7.89 87.24 0.69 13.60 16 10 O -0.54 -16.03 16.48 -3.26 -0.05 -16.08 16 11 N -0.68 -17.66 5.55 -464.51 -2.58 -20.24 16 12 C 0.13 3.99 5.67 86.38 0.49 4.48 16 13 C -0.11 -3.88 5.27 30.59 0.16 -3.71 16 14 C 0.02 1.17 4.97 29.85 0.15 1.32 16 15 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 19 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.16 -2.85 8.65 22.42 0.19 -2.66 16 24 C -0.05 -0.79 9.82 22.26 0.22 -0.58 16 25 C -0.10 -1.68 6.33 22.43 0.14 -1.53 16 26 Cl -0.06 -1.03 28.49 -2.72 -0.08 -1.11 16 27 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 28 H 0.07 0.29 7.67 -2.39 -0.02 0.27 16 29 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.17 1.38 6.30 -2.91 -0.02 1.36 16 31 H 0.43 5.75 8.30 -92.71 -0.77 4.99 16 32 H 0.42 9.58 7.94 -92.71 -0.74 8.84 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.14 2.73 6.41 -2.91 -0.02 2.72 16 41 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.35 371.98 1.71 -66.64 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.41 Total: 13.07 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.11 Total: -1.60 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -3.92 Total: -87.92 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.02 Total: -34.36 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -68.35 1.71 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192884510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.586 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds