Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99740 * 2 1 4 4 H 1.48496 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46895 * 300.00170 * 3 2 1 6 6 H 1.48498 * 109.46822 * 60.00344 * 3 2 1 7 7 C 1.37877 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47448 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47158 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54214 * 68.37531 * 11 10 9 13 13 O 1.42098 * 110.54402 * 291.62250 * 11 10 9 14 14 N 1.65603 * 104.44863 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99891 * 65.00295 * 14 11 10 16 16 C 1.52995 * 109.47251 * 165.00002 * 15 14 11 17 17 C 1.50697 * 109.47419 * 180.02562 * 16 15 14 18 18 C 1.34207 * 126.49510 * 265.00301 * 17 16 15 19 19 N 1.36905 * 109.92328 * 179.97438 * 18 17 16 20 20 H 0.96997 * 125.07433 * 179.97438 * 19 18 17 21 21 C 1.37691 * 109.86630 * 0.02562 * 19 18 17 22 22 C 1.39117 * 133.47469 * 179.71345 * 21 19 18 23 23 C 1.37960 * 119.75709 * 179.86758 * 22 21 19 24 24 F 1.35099 * 119.69041 * 180.20129 * 23 22 21 25 25 C 1.39026 * 120.60653 * 0.44945 * 23 22 21 26 26 C 1.36605 * 120.50757 * 359.76974 * 25 23 22 27 27 C 1.39627 * 119.80096 * 0.02562 * 26 25 23 28 28 H 0.97001 * 120.00643 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47374 * 59.99564 * 9 7 2 30 30 H 1.09006 * 109.47013 * 300.00223 * 9 7 2 31 31 H 1.09005 * 109.46707 * 59.99754 * 10 9 7 32 32 H 1.08993 * 109.46806 * 300.00262 * 10 9 7 33 33 H 0.96993 * 120.00182 * 244.99811 * 14 11 10 34 34 H 1.08999 * 109.47039 * 44.99476 * 15 14 11 35 35 H 1.08998 * 109.46880 * 285.00028 * 15 14 11 36 36 H 1.08999 * 109.47528 * 59.99773 * 16 15 14 37 37 H 1.09004 * 109.46902 * 300.00150 * 16 15 14 38 38 H 1.08001 * 125.04237 * 359.97394 * 18 17 16 39 39 H 1.08001 * 120.12261 * 0.31305 * 22 21 19 40 40 H 1.08004 * 119.74479 * 179.75398 * 25 23 22 41 41 H 1.07999 * 120.09873 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2330 0.0002 12 8 0.6641 -5.4200 -1.2365 13 8 0.6650 -5.4194 1.2375 14 7 2.5208 -6.3926 -0.0006 15 6 3.4199 -6.5227 1.1487 16 6 4.1510 -7.8647 1.0750 17 6 5.0755 -7.9988 2.2575 18 6 6.3819 -7.6932 2.2880 19 7 6.8912 -7.9458 3.5334 20 1 7.8135 -7.8036 3.7978 21 6 5.8991 -8.4329 4.3546 22 6 5.8727 -8.8452 5.6830 23 6 4.6915 -9.2929 6.2377 24 9 4.6664 -9.6892 7.5290 25 6 3.5280 -9.3449 5.4785 26 6 3.5346 -8.9486 4.1712 27 6 4.7186 -8.4882 3.5917 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6042 0.8895 32 1 2.8721 -3.6042 -0.8905 33 1 2.6178 -6.9857 -0.7618 34 1 2.8405 -6.4747 2.0707 35 1 4.1476 -5.7113 1.1343 36 1 4.7305 -7.9127 0.1530 37 1 3.4233 -8.6761 1.0893 38 1 6.9477 -7.3055 1.4537 39 1 6.7719 -8.8082 6.2800 40 1 2.6118 -9.7015 5.9257 41 1 2.6269 -8.9914 3.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267300242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -77.008993 kcal Electronic energy + Delta-G solvation = -26010.768184 eV Core-core repulsion = 21932.092942 eV Total energy + Delta-G solvation = -4078.675242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.10191 -41.61416 -37.05002 -36.61309 -36.05785 -35.38235 -33.88150 -32.87819 -31.15020 -30.47844 -29.39432 -27.61063 -25.59151 -23.48185 -23.23474 -22.18473 -21.66319 -19.86933 -18.89119 -18.37555 -17.44938 -17.33042 -16.54117 -16.50316 -16.06838 -15.83424 -15.53616 -15.44725 -14.79977 -14.70508 -14.54575 -14.43677 -14.23005 -13.84939 -13.40147 -13.36157 -12.96388 -12.56089 -12.38981 -12.28660 -11.74361 -11.66154 -11.59596 -11.52892 -11.46999 -11.34957 -11.16166 -11.09328 -10.94821 -10.39640 -10.37539 -9.89682 -9.77782 -9.45107 -8.99695 -8.53639 -8.50432 -7.98715 -6.12245 -4.17657 0.66703 0.82982 1.16723 2.26873 2.68011 3.19557 3.25049 3.32249 3.35425 3.44784 4.09120 4.27287 4.33579 4.38511 4.41405 4.66681 4.73358 4.78150 4.88400 4.94332 5.08090 5.16068 5.23070 5.31010 5.44210 5.48193 5.57157 5.69928 5.70207 5.79795 5.84727 5.96262 6.08184 6.14792 6.34150 6.40882 6.50635 6.76205 7.12120 7.13888 7.31573 7.37868 7.80929 8.18233 8.86005 9.47080 10.98865 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.002420 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.899749 B =11565.745066 C =12213.828742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.594 3.406 12 O -0.969 6.969 13 O -0.967 6.967 14 N -1.129 6.129 15 C 0.119 3.881 16 C -0.050 4.050 17 C -0.160 4.160 18 C 0.058 3.942 19 N -0.592 5.592 20 H 0.418 0.582 21 C 0.120 3.880 22 C -0.170 4.170 23 C 0.119 3.881 24 F -0.140 7.140 25 C -0.178 4.178 26 C -0.035 4.035 27 C -0.111 4.111 28 H 0.264 0.736 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.175 0.825 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.598 -20.467 6.719 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.691 3.309 12 O -0.959 6.959 13 O -0.956 6.956 14 N -0.887 5.887 15 C -0.008 4.008 16 C -0.089 4.089 17 C -0.168 4.168 18 C -0.068 4.068 19 N -0.195 5.195 20 H 0.255 0.745 21 C 0.012 3.988 22 C -0.192 4.192 23 C 0.099 3.901 24 F -0.118 7.118 25 C -0.198 4.198 26 C -0.054 4.054 27 C -0.116 4.116 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.245 0.755 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.192 0.808 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.611 -20.423 6.941 26.053 hybrid contribution 1.679 1.080 0.123 2.000 sum 16.291 -19.343 7.064 26.257 Atomic orbital electron populations 1.69960 1.06107 1.27078 1.49689 1.25071 0.94965 0.99537 0.94951 0.86423 0.79904 0.83245 0.77762 1.19683 1.20805 1.20807 1.21042 0.93069 0.89802 1.51964 0.92035 1.18967 0.92723 0.90595 0.98908 1.30441 1.13710 1.18192 1.09989 1.05492 0.74666 0.76611 0.74092 1.93551 1.71685 1.85364 1.45318 1.93540 1.71436 1.84970 1.45694 1.55803 1.53113 1.52260 1.27474 1.21288 0.92826 0.97786 0.88879 1.20077 0.96867 0.97273 0.94701 1.20080 0.93788 1.08759 0.94154 1.21715 0.94559 1.02844 0.87651 1.41718 1.10868 1.57217 1.09658 0.74495 1.17765 0.88846 1.00379 0.91779 1.19748 0.98275 1.07853 0.93332 1.17181 0.94147 0.99979 0.78793 1.91495 1.97204 1.88463 1.34676 1.20648 0.97662 1.06553 0.94933 1.20214 0.96896 0.94553 0.93715 1.19131 0.93090 1.05414 0.93954 0.92582 0.94820 0.94810 0.86377 0.86141 0.75534 0.90123 0.91719 0.90308 0.90183 0.80814 0.85077 0.84568 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.02 6.01 37.16 0.22 -10.80 16 11 S 2.59 45.00 5.46 -107.50 -0.59 44.41 16 12 O -0.97 -19.69 18.08 -57.54 -1.04 -20.73 16 13 O -0.97 -19.78 17.50 -57.54 -1.01 -20.79 16 14 N -1.13 -13.44 5.89 -10.62 -0.06 -13.51 16 15 C 0.12 1.24 6.11 -4.04 -0.02 1.22 16 16 C -0.05 -0.40 5.89 -27.89 -0.16 -0.56 16 17 C -0.16 -1.38 5.57 -102.71 -0.57 -1.96 16 18 C 0.06 0.39 11.74 -16.71 -0.20 0.19 16 19 N -0.59 -3.93 6.07 -10.64 -0.06 -4.00 16 20 H 0.42 1.52 8.96 -40.82 -0.37 1.15 16 21 C 0.12 1.11 7.28 -83.99 -0.61 0.50 16 22 C -0.17 -1.54 10.05 -39.36 -0.40 -1.94 16 23 C 0.12 1.20 7.28 -39.39 -0.29 0.91 16 24 F -0.14 -1.48 17.25 2.25 0.04 -1.44 16 25 C -0.18 -1.71 9.95 -39.88 -0.40 -2.11 16 26 C -0.04 -0.35 10.05 -39.65 -0.40 -0.74 16 27 C -0.11 -1.12 6.35 -105.12 -0.67 -1.79 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 32 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.41 3.93 8.62 -34.47 -0.30 3.63 16 34 H 0.08 0.96 7.70 -51.93 -0.40 0.56 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -36.89 370.76 -10.71 -47.60 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.25 Total: 2.10 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -4.04 Total: -29.60 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.61 Total: -43.24 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.05 Total: -41.52 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.00 SS G_CDS: -0.59 Total: 44.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.89 -10.71 -47.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267300242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.410 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds