Wall clock time and date at job start Sat Apr 11 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99740 * 2 1 4 4 H 1.48496 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46895 * 300.00170 * 3 2 1 6 6 H 1.48498 * 109.46822 * 60.00344 * 3 2 1 7 7 C 1.37877 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47448 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47158 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54214 * 68.37531 * 11 10 9 13 13 O 1.42098 * 110.54402 * 291.62250 * 11 10 9 14 14 N 1.65603 * 104.44863 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99891 * 65.00295 * 14 11 10 16 16 C 1.52995 * 109.47251 * 165.00002 * 15 14 11 17 17 C 1.50697 * 109.47419 * 180.02562 * 16 15 14 18 18 C 1.34207 * 126.49510 * 265.00301 * 17 16 15 19 19 N 1.36905 * 109.92328 * 179.97438 * 18 17 16 20 20 H 0.96997 * 125.07433 * 179.97438 * 19 18 17 21 21 C 1.37691 * 109.86630 * 0.02562 * 19 18 17 22 22 C 1.39117 * 133.47469 * 179.71345 * 21 19 18 23 23 C 1.37960 * 119.75709 * 179.86758 * 22 21 19 24 24 F 1.35099 * 119.69041 * 180.20129 * 23 22 21 25 25 C 1.39026 * 120.60653 * 0.44945 * 23 22 21 26 26 C 1.36605 * 120.50757 * 359.76974 * 25 23 22 27 27 C 1.39627 * 119.80096 * 0.02562 * 26 25 23 28 28 H 0.97001 * 120.00643 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47374 * 59.99564 * 9 7 2 30 30 H 1.09006 * 109.47013 * 300.00223 * 9 7 2 31 31 H 1.09005 * 109.46707 * 59.99754 * 10 9 7 32 32 H 1.08993 * 109.46806 * 300.00262 * 10 9 7 33 33 H 0.96993 * 120.00182 * 244.99811 * 14 11 10 34 34 H 1.08999 * 109.47039 * 44.99476 * 15 14 11 35 35 H 1.08998 * 109.46880 * 285.00028 * 15 14 11 36 36 H 1.08999 * 109.47528 * 59.99773 * 16 15 14 37 37 H 1.09004 * 109.46902 * 300.00150 * 16 15 14 38 38 H 1.08001 * 125.04237 * 359.97394 * 18 17 16 39 39 H 1.08001 * 120.12261 * 0.31305 * 22 21 19 40 40 H 1.08004 * 119.74479 * 179.75398 * 25 23 22 41 41 H 1.07999 * 120.09873 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2330 0.0002 12 8 0.6641 -5.4200 -1.2365 13 8 0.6650 -5.4194 1.2375 14 7 2.5208 -6.3926 -0.0006 15 6 3.4199 -6.5227 1.1487 16 6 4.1510 -7.8647 1.0750 17 6 5.0755 -7.9988 2.2575 18 6 6.3819 -7.6932 2.2880 19 7 6.8912 -7.9458 3.5334 20 1 7.8135 -7.8036 3.7978 21 6 5.8991 -8.4329 4.3546 22 6 5.8727 -8.8452 5.6830 23 6 4.6915 -9.2929 6.2377 24 9 4.6664 -9.6892 7.5290 25 6 3.5280 -9.3449 5.4785 26 6 3.5346 -8.9486 4.1712 27 6 4.7186 -8.4882 3.5917 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6042 0.8895 32 1 2.8721 -3.6042 -0.8905 33 1 2.6178 -6.9857 -0.7618 34 1 2.8405 -6.4747 2.0707 35 1 4.1476 -5.7113 1.1343 36 1 4.7305 -7.9127 0.1530 37 1 3.4233 -8.6761 1.0893 38 1 6.9477 -7.3055 1.4537 39 1 6.7719 -8.8082 6.2800 40 1 2.6118 -9.7015 5.9257 41 1 2.6269 -8.9914 3.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267300242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:50 Heat of formation + Delta-G solvation = -103.311214 kcal Electronic energy + Delta-G solvation = -26011.908734 eV Core-core repulsion = 21932.092942 eV Total energy + Delta-G solvation = -4079.815792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86804 -42.21213 -38.12632 -37.69566 -37.04569 -36.83879 -35.86550 -33.61554 -33.09191 -31.18472 -30.06515 -28.30140 -27.56167 -24.17285 -23.97928 -23.56038 -22.85249 -20.64666 -20.04963 -19.19025 -18.89043 -18.13393 -18.06481 -17.35733 -17.20613 -16.95730 -16.61169 -16.50287 -16.21636 -15.97877 -15.51843 -15.19748 -14.98492 -14.84986 -14.53449 -14.44242 -14.18710 -13.72682 -13.69826 -13.25491 -13.14475 -13.04214 -12.96642 -12.92371 -12.74577 -12.57085 -12.32646 -12.21619 -12.14873 -12.06172 -11.84141 -11.68627 -11.11383 -10.64143 -10.57656 -10.23777 -9.20444 -8.59625 -8.24501 -6.38271 -0.60741 0.00167 0.46151 1.41888 1.42549 1.55681 1.67030 1.96883 2.16586 2.39216 2.74027 2.87984 3.09172 3.34843 3.41784 3.70150 3.86228 3.99156 4.07262 4.11941 4.18051 4.21981 4.33814 4.41157 4.57809 4.65996 4.74379 4.78100 4.82745 4.93243 5.01498 5.16513 5.29583 5.30631 5.31354 5.34193 5.47910 5.69406 5.70679 5.79070 6.08496 6.11403 6.27181 6.69750 6.76151 7.31937 8.88051 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.002420 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.899749 B =11565.745066 C =12213.828742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.588 4.588 11 S 2.621 3.379 12 O -1.001 7.001 13 O -1.001 7.001 14 N -1.105 6.105 15 C 0.109 3.891 16 C -0.040 4.040 17 C -0.188 4.188 18 C 0.079 3.921 19 N -0.581 5.581 20 H 0.433 0.567 21 C 0.104 3.896 22 C -0.166 4.166 23 C 0.095 3.905 24 F -0.148 7.148 25 C -0.186 4.186 26 C -0.052 4.052 27 C -0.129 4.129 28 H 0.267 0.733 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.427 0.573 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.213 0.787 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.113 -20.434 5.918 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.720 4.720 11 S 2.717 3.283 12 O -0.991 6.991 13 O -0.991 6.991 14 N -0.868 5.868 15 C -0.016 4.016 16 C -0.080 4.080 17 C -0.196 4.196 18 C -0.047 4.047 19 N -0.185 5.185 20 H 0.273 0.727 21 C -0.004 4.004 22 C -0.188 4.188 23 C 0.075 3.925 24 F -0.126 7.126 25 C -0.206 4.206 26 C -0.070 4.070 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.230 0.770 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.157 -20.397 6.136 27.989 hybrid contribution 0.645 0.993 0.375 1.242 sum 18.802 -19.405 6.511 27.793 Atomic orbital electron populations 1.70109 1.08116 1.28215 1.51103 1.26131 0.95844 1.03935 0.94496 0.85264 0.79254 0.78029 0.77697 1.17733 1.20435 1.20556 1.21567 0.94034 0.90777 1.51148 0.90469 1.18831 0.93700 0.93235 0.96293 1.30331 1.12749 1.16533 1.12388 1.04376 0.74769 0.76572 0.72568 1.93501 1.73211 1.85838 1.46545 1.93499 1.72931 1.85470 1.47192 1.55218 1.52304 1.50560 1.28715 1.21564 0.92619 1.00345 0.87113 1.20007 0.96836 0.95292 0.95827 1.20186 0.94883 1.10737 0.93751 1.22326 0.94101 1.00200 0.88095 1.41794 1.11259 1.56086 1.09336 0.72670 1.17877 0.89517 1.01050 0.91984 1.19946 0.98502 1.06699 0.93636 1.17373 0.94916 1.01462 0.78750 1.91467 1.97284 1.88741 1.35141 1.20803 0.98064 1.06569 0.95119 1.20353 0.97451 0.95311 0.93926 1.19499 0.93380 1.05378 0.95195 0.92454 0.97539 0.97687 0.84120 0.83623 0.73612 0.92112 0.89790 0.87462 0.90516 0.77036 0.83306 0.83838 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.29 21.45 0.28 -56.71 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 4 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.02 0.95 4.98 29.85 0.15 1.09 16 10 C -0.59 -21.32 6.01 71.98 0.43 -20.89 16 11 S 2.62 89.83 5.46 -56.49 -0.31 89.53 16 12 O -1.00 -40.67 18.08 -127.65 -2.31 -42.98 16 13 O -1.00 -41.60 17.50 -127.65 -2.23 -43.83 16 14 N -1.11 -23.91 5.89 -187.50 -1.10 -25.01 16 15 C 0.11 2.02 6.11 86.38 0.53 2.55 16 16 C -0.04 -0.52 5.89 29.85 0.18 -0.34 16 17 C -0.19 -2.74 5.57 -18.62 -0.10 -2.85 16 18 C 0.08 0.74 11.74 82.98 0.97 1.72 16 19 N -0.58 -5.90 6.07 -187.58 -1.14 -7.04 16 20 H 0.43 1.64 8.96 -92.71 -0.83 0.81 16 21 C 0.10 1.76 7.28 39.03 0.28 2.04 16 22 C -0.17 -2.88 10.05 22.42 0.23 -2.65 16 23 C 0.10 1.94 7.28 22.39 0.16 2.10 16 24 F -0.15 -3.19 17.25 44.97 0.78 -2.41 16 25 C -0.19 -3.69 9.95 22.08 0.22 -3.47 16 26 C -0.05 -1.03 10.05 22.22 0.22 -0.81 16 27 C -0.13 -2.47 6.35 -20.19 -0.13 -2.60 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 32 H 0.15 4.50 8.14 -2.39 -0.02 4.48 16 33 H 0.43 6.95 8.62 -96.75 -0.83 6.11 16 34 H 0.06 1.39 7.70 -2.39 -0.02 1.38 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.26 370.76 -0.75 -83.01 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.59 Total: 13.63 kcal Atomic # 6 Polarization: -56.99 SS G_CDS: 3.84 Total: -53.15 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -1.96 Total: -88.76 kcal Atomic # 8 Polarization: -82.27 SS G_CDS: -4.54 Total: -86.82 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 89.83 SS G_CDS: -0.31 Total: 89.53 kcal Total: -82.26 -0.75 -83.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267300242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.301 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds