Wall clock time and date at job start Sat Apr 11 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42895 * 109.46815 * 2 1 4 4 C 1.35958 * 117.00031 * 179.97438 * 3 2 1 5 5 C 1.38549 * 120.07817 * 0.02562 * 4 3 2 6 6 C 1.38336 * 120.00685 * 180.02562 * 5 4 3 7 7 Cl 1.73602 * 119.91591 * 179.97438 * 6 5 4 8 8 C 1.38414 * 120.17363 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.15535 * 359.95716 * 8 6 5 10 10 C 1.38793 * 119.99458 * 0.06519 * 9 8 6 11 11 N 1.39911 * 120.08718 * 180.22979 * 10 9 8 12 12 C 1.34774 * 119.99985 * 325.31489 * 11 10 9 13 13 O 1.21392 * 120.00065 * 4.47862 * 12 11 10 14 14 C 1.49329 * 120.00116 * 184.47828 * 12 11 10 15 15 O 1.21370 * 119.99696 * 359.97438 * 14 12 11 16 16 N 1.34774 * 120.00116 * 179.97438 * 14 12 11 17 17 C 1.46504 * 119.99907 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.46752 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46774 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00448 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47393 * 59.99329 * 23 21 19 25 25 H 1.48503 * 109.47174 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47104 * 299.99613 * 23 21 19 27 27 H 1.09002 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47055 * 300.00072 * 1 2 3 29 29 H 1.09001 * 109.46839 * 60.00354 * 1 2 3 30 30 H 1.08998 * 109.47055 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.46839 * 119.99646 * 2 1 3 32 32 H 1.07995 * 119.99445 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.92712 * 179.97438 * 8 6 5 34 34 H 1.07999 * 120.00071 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99764 * 145.30871 * 11 10 9 36 36 H 0.97003 * 119.99985 * 359.97438 * 16 14 12 37 37 H 1.08989 * 109.47365 * 300.00027 * 17 16 14 38 38 H 1.09000 * 109.46750 * 60.00367 * 17 16 14 39 39 H 1.08997 * 109.47277 * 299.99927 * 18 17 16 40 40 H 1.09000 * 109.47013 * 60.00748 * 18 17 16 41 41 H 0.96998 * 120.00687 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1997 0.4279 0.0005 6 6 5.5709 0.6110 0.0016 7 17 6.6282 -0.7660 0.0023 8 6 6.1022 1.8891 0.0022 9 6 5.2654 2.9885 0.0008 10 6 3.8886 2.8126 0.0002 11 7 3.0395 3.9246 -0.0061 12 6 3.3926 5.0459 0.6530 13 8 4.4818 5.1205 1.1837 14 6 2.4439 6.1965 0.7307 15 8 1.3551 6.1220 0.1997 16 7 2.7968 7.3175 1.3903 17 6 1.8663 8.4466 1.4659 18 6 2.5073 9.5830 2.2650 19 6 1.5498 10.7442 2.3433 20 1 0.5809 10.6780 1.8708 21 6 1.9108 11.8910 3.0182 22 7 3.0908 11.9718 3.5932 23 14 0.7238 13.3300 3.1159 24 1 -0.5264 12.8957 3.7895 25 1 1.3464 14.4336 3.8904 26 1 0.4078 13.8051 1.7448 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7883 -0.5706 0.0005 33 1 7.1732 2.0274 0.0035 34 1 5.6826 3.9847 0.0008 35 1 2.1967 3.8885 -0.4850 36 1 3.6669 7.3769 1.8149 37 1 1.6352 8.7950 0.4594 38 1 0.9483 8.1283 1.9600 39 1 2.7380 9.2343 3.2716 40 1 3.4254 9.9014 1.7713 41 1 3.3446 12.7785 4.0683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273163155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:56 Heat of formation + Delta-G solvation = -95.068907 kcal Electronic energy + Delta-G solvation = -25876.603550 eV Core-core repulsion = 21782.728676 eV Total energy + Delta-G solvation = -4093.874875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33474 -40.16979 -38.63998 -37.92055 -36.73639 -35.49960 -34.65073 -32.88876 -32.26304 -30.68946 -29.90001 -29.40479 -25.87758 -24.75049 -24.04474 -22.48985 -22.14882 -21.04520 -20.24145 -19.13370 -18.38793 -17.49954 -16.72942 -16.66727 -16.44732 -16.05422 -15.68733 -15.67103 -14.92640 -14.63162 -14.52970 -14.46580 -14.00324 -13.89613 -13.58827 -13.07793 -13.04943 -13.00309 -12.81263 -12.42513 -12.33761 -11.92810 -11.76088 -11.50448 -11.31261 -11.24191 -11.10738 -11.06681 -10.70447 -10.48196 -10.42352 -9.84643 -9.51395 -9.27639 -9.08402 -8.76366 -8.44027 -8.22542 -6.11800 -4.15752 0.57629 0.90042 1.51100 1.71946 2.30994 2.66163 3.12034 3.29534 3.33884 3.36358 3.37685 3.69871 4.30335 4.37744 4.47406 4.48096 4.57656 4.66315 4.69998 4.78918 4.95389 5.14694 5.25016 5.33676 5.37296 5.38874 5.64302 5.70440 5.82098 5.98069 6.13153 6.19829 6.28811 6.52092 6.64036 6.80282 6.92207 7.40173 7.54496 7.54826 7.77954 7.84802 8.14387 8.27284 8.89518 9.49240 10.99579 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.001992 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.069708 B =14049.713180 C =15365.643081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.308 6.308 4 C 0.124 3.876 5 C -0.186 4.186 6 C -0.010 4.010 7 Cl -0.068 7.068 8 C -0.126 4.126 9 C -0.072 4.072 10 C 0.122 3.878 11 N -0.639 5.639 12 C 0.510 3.490 13 O -0.502 6.502 14 C 0.501 3.499 15 O -0.527 6.527 16 N -0.683 5.683 17 C 0.118 3.882 18 C 0.011 3.989 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.427 0.573 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -28.169 -8.963 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.222 6.222 4 C 0.076 3.924 5 C -0.206 4.206 6 C -0.037 4.037 7 Cl -0.039 7.039 8 C -0.145 4.145 9 C -0.092 4.092 10 C 0.027 3.973 11 N -0.286 5.286 12 C 0.292 3.708 13 O -0.376 6.376 14 C 0.280 3.720 15 O -0.405 6.405 16 N -0.334 5.334 17 C -0.003 4.003 18 C -0.026 4.026 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.266 0.734 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.825 -27.927 -8.817 29.422 hybrid contribution -0.388 0.381 0.143 0.562 sum 2.438 -27.546 -8.673 28.982 Atomic orbital electron populations 1.21792 0.92249 1.03035 1.03989 1.22877 0.96292 0.81323 1.01607 1.86108 1.17607 1.29980 1.88516 1.18536 0.83097 0.91850 0.98937 1.20855 0.91893 0.98680 1.09161 1.20635 0.90395 0.88618 1.04053 1.98375 1.65729 1.42939 1.96851 1.20910 1.00992 0.89664 1.02961 1.21216 0.90176 1.00698 0.97150 1.17147 0.90183 0.83793 1.06178 1.42987 1.23600 1.11013 1.50980 1.20680 0.87699 0.83974 0.78397 1.90753 1.21822 1.80938 1.44054 1.19671 0.87004 0.83933 0.81421 1.90763 1.22143 1.81569 1.46037 1.46233 1.21271 1.14309 1.51548 1.21977 0.91913 0.84833 1.01586 1.19357 0.96853 0.91227 0.95190 1.20965 1.01650 0.98934 1.34769 0.92195 1.25000 0.95365 0.98722 0.95175 1.69941 1.19815 1.28412 1.34871 0.86551 0.80981 0.81606 0.78256 1.20093 1.21229 1.20093 0.90195 0.91209 0.91246 0.91741 0.91731 0.83963 0.84116 0.82323 0.73407 0.75291 0.91697 0.91733 0.95637 0.95617 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.34 5.46 37.16 0.20 0.54 16 3 O -0.31 -2.97 9.69 -19.61 -0.19 -3.16 16 4 C 0.12 1.26 6.70 -39.04 -0.26 1.00 16 5 C -0.19 -1.63 8.81 -39.43 -0.35 -1.98 16 6 C -0.01 -0.09 6.32 -39.48 -0.25 -0.34 16 7 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 8 C -0.13 -1.19 9.82 -39.54 -0.39 -1.57 16 9 C -0.07 -0.79 8.70 -39.40 -0.34 -1.14 16 10 C 0.12 1.41 6.32 -83.54 -0.53 0.89 16 11 N -0.64 -7.90 5.18 -10.18 -0.05 -7.95 16 12 C 0.51 7.40 7.73 -11.64 -0.09 7.31 16 13 O -0.50 -7.81 13.89 5.46 0.08 -7.74 16 14 C 0.50 8.32 7.88 -11.64 -0.09 8.22 16 15 O -0.53 -9.71 16.48 5.48 0.09 -9.62 16 16 N -0.68 -11.95 5.55 -60.77 -0.34 -12.29 16 17 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 18 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 19 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 23 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.16 1.85 6.18 -52.49 -0.32 1.52 16 35 H 0.43 4.92 8.04 -40.82 -0.33 4.59 16 36 H 0.41 6.79 7.94 -40.82 -0.32 6.46 16 37 H 0.06 1.33 8.14 -51.94 -0.42 0.91 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -30.62 372.07 -7.91 -38.53 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.03 Total: 5.69 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.29 Total: 2.03 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.35 Total: -45.35 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.02 Total: -20.51 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.62 -7.91 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273163155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.539 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds