Wall clock time and date at job start Sat Apr 11 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42895 * 109.46815 * 2 1 4 4 C 1.35958 * 117.00031 * 179.97438 * 3 2 1 5 5 C 1.38549 * 120.07817 * 0.02562 * 4 3 2 6 6 C 1.38336 * 120.00685 * 180.02562 * 5 4 3 7 7 Cl 1.73602 * 119.91591 * 179.97438 * 6 5 4 8 8 C 1.38414 * 120.17363 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.15535 * 359.95716 * 8 6 5 10 10 C 1.38793 * 119.99458 * 0.06519 * 9 8 6 11 11 N 1.39911 * 120.08718 * 180.22979 * 10 9 8 12 12 C 1.34774 * 119.99985 * 325.31489 * 11 10 9 13 13 O 1.21392 * 120.00065 * 4.47862 * 12 11 10 14 14 C 1.49329 * 120.00116 * 184.47828 * 12 11 10 15 15 O 1.21370 * 119.99696 * 359.97438 * 14 12 11 16 16 N 1.34774 * 120.00116 * 179.97438 * 14 12 11 17 17 C 1.46504 * 119.99907 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.46752 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46774 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00448 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47393 * 59.99329 * 23 21 19 25 25 H 1.48503 * 109.47174 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47104 * 299.99613 * 23 21 19 27 27 H 1.09002 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47055 * 300.00072 * 1 2 3 29 29 H 1.09001 * 109.46839 * 60.00354 * 1 2 3 30 30 H 1.08998 * 109.47055 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.46839 * 119.99646 * 2 1 3 32 32 H 1.07995 * 119.99445 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.92712 * 179.97438 * 8 6 5 34 34 H 1.07999 * 120.00071 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99764 * 145.30871 * 11 10 9 36 36 H 0.97003 * 119.99985 * 359.97438 * 16 14 12 37 37 H 1.08989 * 109.47365 * 300.00027 * 17 16 14 38 38 H 1.09000 * 109.46750 * 60.00367 * 17 16 14 39 39 H 1.08997 * 109.47277 * 299.99927 * 18 17 16 40 40 H 1.09000 * 109.47013 * 60.00748 * 18 17 16 41 41 H 0.96998 * 120.00687 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1997 0.4279 0.0005 6 6 5.5709 0.6110 0.0016 7 17 6.6282 -0.7660 0.0023 8 6 6.1022 1.8891 0.0022 9 6 5.2654 2.9885 0.0008 10 6 3.8886 2.8126 0.0002 11 7 3.0395 3.9246 -0.0061 12 6 3.3926 5.0459 0.6530 13 8 4.4818 5.1205 1.1837 14 6 2.4439 6.1965 0.7307 15 8 1.3551 6.1220 0.1997 16 7 2.7968 7.3175 1.3903 17 6 1.8663 8.4466 1.4659 18 6 2.5073 9.5830 2.2650 19 6 1.5498 10.7442 2.3433 20 1 0.5809 10.6780 1.8708 21 6 1.9108 11.8910 3.0182 22 7 3.0908 11.9718 3.5932 23 14 0.7238 13.3300 3.1159 24 1 -0.5264 12.8957 3.7895 25 1 1.3464 14.4336 3.8904 26 1 0.4078 13.8051 1.7448 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7883 -0.5706 0.0005 33 1 7.1732 2.0274 0.0035 34 1 5.6826 3.9847 0.0008 35 1 2.1967 3.8885 -0.4850 36 1 3.6669 7.3769 1.8149 37 1 1.6352 8.7950 0.4594 38 1 0.9483 8.1283 1.9600 39 1 2.7380 9.2343 3.2716 40 1 3.4254 9.9014 1.7713 41 1 3.3446 12.7785 4.0683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273163155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:55 Heat of formation + Delta-G solvation = -114.950161 kcal Electronic energy + Delta-G solvation = -25877.465666 eV Core-core repulsion = 21782.728676 eV Total energy + Delta-G solvation = -4094.736991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33419 -41.17364 -39.81702 -38.71479 -37.52145 -36.91410 -35.86045 -34.80590 -32.79020 -31.75644 -31.40424 -30.25725 -27.48836 -25.75974 -25.16472 -23.37671 -23.09392 -22.62240 -21.43779 -20.14634 -19.33010 -18.63643 -18.37747 -17.59929 -17.46920 -17.08945 -16.89095 -16.53210 -16.41007 -16.24936 -15.78664 -15.40363 -15.00729 -14.86257 -14.68530 -14.43495 -14.30033 -13.68362 -13.57471 -13.46112 -13.26409 -13.16001 -12.92896 -12.79165 -12.61392 -12.54346 -12.27304 -12.20877 -12.00051 -11.68656 -11.67417 -11.45748 -11.33483 -10.77107 -10.60743 -10.24130 -9.84143 -9.04788 -8.22831 -6.33972 -0.30912 0.15106 0.35492 0.98832 1.15842 1.43944 1.45958 1.54001 1.97088 2.01576 2.38460 2.47044 2.54344 3.12132 3.28258 3.60673 3.85863 3.95765 4.05556 4.07684 4.17575 4.36666 4.37907 4.45363 4.49364 4.59229 4.81421 4.85010 4.88920 4.94373 5.03480 5.06340 5.13982 5.25293 5.42178 5.48817 5.55492 5.72913 5.80644 6.12968 6.18232 6.25169 6.57565 6.77813 6.84044 7.35473 8.88873 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.001992 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.069708 B =14049.713180 C =15365.643081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.324 6.324 4 C 0.126 3.874 5 C -0.181 4.181 6 C -0.009 4.009 7 Cl -0.056 7.056 8 C -0.127 4.127 9 C -0.079 4.079 10 C 0.095 3.905 11 N -0.625 5.625 12 C 0.517 3.483 13 O -0.515 6.515 14 C 0.506 3.494 15 O -0.544 6.544 16 N -0.684 5.684 17 C 0.137 3.863 18 C 0.019 3.981 19 C -0.545 4.545 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.267 1.267 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.431 0.569 36 H 0.416 0.584 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -29.916 -9.524 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.238 6.238 4 C 0.078 3.922 5 C -0.200 4.200 6 C -0.036 4.036 7 Cl -0.027 7.027 8 C -0.147 4.147 9 C -0.100 4.100 10 C 0.001 3.999 11 N -0.272 5.272 12 C 0.299 3.701 13 O -0.390 6.390 14 C 0.286 3.714 15 O -0.423 6.423 16 N -0.335 5.335 17 C 0.015 3.985 18 C -0.019 4.019 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.192 1.192 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.270 0.730 36 H 0.253 0.747 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.272 -29.724 -9.398 31.257 hybrid contribution -0.191 0.753 0.284 0.827 sum 2.081 -28.971 -9.113 30.442 Atomic orbital electron populations 1.21827 0.91699 1.04279 1.03129 1.23181 0.96781 0.80061 1.02961 1.86106 1.17227 1.32145 1.88347 1.18555 0.83692 0.91551 0.98418 1.21088 0.91600 0.99336 1.08009 1.20757 0.90829 0.88890 1.03145 1.98384 1.65391 1.42170 1.96727 1.21062 1.01653 0.89434 1.02524 1.21181 0.90281 1.00823 0.97673 1.17346 0.90350 0.83949 1.08297 1.42835 1.23743 1.10643 1.49993 1.20118 0.87031 0.83965 0.78962 1.90756 1.22052 1.81170 1.45053 1.19955 0.87048 0.84029 0.80384 1.90749 1.23017 1.81941 1.46545 1.46039 1.21112 1.14146 1.52213 1.21518 0.91777 0.84544 1.00668 1.19177 0.96035 0.92079 0.94604 1.21422 1.02314 0.99968 1.34644 0.91662 1.25913 0.97065 1.01668 0.94779 1.70063 1.21637 1.29289 1.35728 0.85468 0.78795 0.78008 0.78591 1.19211 1.20929 1.19181 0.87898 0.92385 0.91771 0.90003 0.90640 0.81616 0.82588 0.83368 0.73019 0.74719 0.91750 0.91923 0.97386 0.97264 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.04 0.46 5.46 71.98 0.39 0.86 16 3 O -0.32 -5.81 9.69 -93.07 -0.90 -6.71 16 4 C 0.13 2.40 6.70 22.62 0.15 2.55 16 5 C -0.18 -2.77 8.81 22.37 0.20 -2.57 16 6 C -0.01 -0.14 6.32 22.33 0.14 0.00 16 7 Cl -0.06 -0.79 28.95 -2.72 -0.08 -0.87 16 8 C -0.13 -2.24 9.82 22.29 0.22 -2.02 16 9 C -0.08 -1.72 8.70 22.38 0.19 -1.52 16 10 C 0.09 2.15 6.32 38.26 0.24 2.39 16 11 N -0.63 -15.37 5.18 -304.47 -1.58 -16.95 16 12 C 0.52 15.06 7.73 87.23 0.67 15.73 16 13 O -0.52 -16.15 13.89 -3.38 -0.05 -16.20 16 14 C 0.51 16.84 7.88 87.23 0.69 17.53 16 15 O -0.54 -19.95 16.48 -3.31 -0.05 -20.00 16 16 N -0.68 -24.22 5.55 -464.53 -2.58 -26.80 16 17 C 0.14 5.64 5.61 86.38 0.48 6.13 16 18 C 0.02 0.92 5.09 29.85 0.15 1.08 16 19 C -0.55 -29.78 9.11 25.60 0.23 -29.55 16 20 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 0.25 5.46 84.65 0.46 0.71 16 22 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 23 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.08 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.17 1.68 6.30 -2.91 -0.02 1.66 16 33 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.15 3.49 6.18 -2.91 -0.02 3.47 16 35 H 0.43 9.84 8.04 -92.71 -0.75 9.09 16 36 H 0.42 14.03 7.94 -92.71 -0.74 13.29 16 37 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 41 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -64.91 372.07 1.66 -63.24 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.39 Total: 22.68 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.97 Total: 10.68 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.87 Total: -97.95 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.00 Total: -42.91 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -64.91 1.66 -63.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273163155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.706 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds