Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47022 * 2 1 4 4 C 1.46498 * 119.99783 * 274.46566 * 3 2 1 5 5 C 1.50703 * 109.46847 * 264.95502 * 4 3 2 6 6 H 1.07991 * 120.00262 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99717 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99785 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46907 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47476 * 209.99832 * 9 7 5 12 12 H 1.48497 * 109.47430 * 330.00563 * 9 7 5 13 13 C 1.34782 * 120.00223 * 94.46443 * 3 2 1 14 14 O 1.21360 * 119.99703 * 354.63118 * 13 3 2 15 15 C 1.49343 * 120.00105 * 174.63147 * 13 3 2 16 16 O 1.21379 * 119.99922 * 354.43466 * 15 13 3 17 17 N 1.34775 * 120.00214 * 174.44118 * 15 13 3 18 18 C 1.39753 * 120.00435 * 184.99487 * 17 15 13 19 19 C 1.38969 * 120.03173 * 35.15833 * 18 17 15 20 20 C 1.38126 * 120.03969 * 180.02562 * 19 18 17 21 21 C 1.38304 * 120.11725 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 119.96088 * 179.97438 * 21 20 19 23 23 C 1.38869 * 120.07608 * 359.97438 * 21 20 19 24 24 O 1.35925 * 120.02321 * 179.97438 * 23 21 20 25 25 C 1.42898 * 117.00037 * 179.97438 * 24 23 21 26 26 C 1.38581 * 119.95440 * 0.23766 * 23 21 20 27 27 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47027 * 300.00126 * 1 2 3 29 29 H 1.08993 * 109.47202 * 60.00036 * 1 2 3 30 30 H 1.08996 * 109.47181 * 239.99603 * 2 1 3 31 31 H 1.09001 * 109.47052 * 119.99677 * 2 1 3 32 32 H 1.08991 * 109.47258 * 24.95819 * 4 3 2 33 33 H 1.09004 * 109.46907 * 144.95815 * 4 3 2 34 34 H 0.96999 * 119.99729 * 179.97438 * 8 7 5 35 35 H 0.97009 * 119.99598 * 5.00160 * 17 15 13 36 36 H 1.08000 * 119.98171 * 0.02562 * 19 18 17 37 37 H 1.07995 * 119.94044 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.46688 * 59.99855 * 25 24 23 39 39 H 1.09005 * 109.47410 * 300.00316 * 25 24 23 40 40 H 1.09000 * 109.47019 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.05372 * 179.74950 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1047 -1.2649 5 6 3.5921 1.9828 -1.7465 6 1 4.3117 1.4222 -1.1685 7 6 3.9748 2.5863 -2.9257 8 7 5.2163 2.4795 -3.3462 9 14 2.7299 3.5554 -3.9259 10 1 2.7385 4.9739 -3.4865 11 1 3.0859 3.4810 -5.3657 12 1 1.3756 2.9820 -3.7205 13 6 2.3286 1.9864 1.1637 14 8 2.1122 1.4235 2.2168 15 6 2.9387 3.3495 1.1571 16 8 3.2483 3.8707 0.1055 17 7 3.1457 4.0008 2.3187 18 6 3.6189 5.3158 2.3079 19 6 3.2205 6.1901 1.3038 20 6 3.6884 7.4896 1.2927 21 6 4.5546 7.9238 2.2797 22 17 5.1407 9.5577 2.2614 23 6 4.9558 7.0542 3.2853 24 8 5.8075 7.4819 4.2545 25 6 6.1774 6.5338 5.2576 26 6 4.4917 5.7485 3.2969 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4961 1.6796 -2.0092 33 1 1.9259 3.1563 -1.1132 34 1 5.4855 2.9037 -4.1760 35 1 2.9663 3.5568 3.1623 36 1 2.5445 5.8533 0.5318 37 1 3.3781 8.1676 0.5115 38 1 6.6711 5.6826 4.7886 39 1 5.2848 6.1925 5.7819 40 1 6.8590 7.0029 5.9672 41 1 4.8059 5.0696 4.0760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279457443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -62.018714 kcal Electronic energy + Delta-G solvation = -27471.022471 eV Core-core repulsion = 23378.580761 eV Total energy + Delta-G solvation = -4092.441711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88751 -39.98968 -38.54369 -37.26646 -36.42026 -35.80747 -34.21260 -32.61889 -30.77329 -30.41572 -29.74088 -27.79441 -27.36322 -25.12593 -23.01915 -22.68367 -22.58739 -21.19044 -19.41911 -18.47595 -17.38189 -17.07425 -16.67230 -16.40929 -16.19362 -15.95539 -15.57280 -15.26984 -15.00217 -14.29919 -14.15556 -13.96323 -13.77616 -13.48599 -13.24189 -13.20730 -12.62663 -12.52585 -12.24772 -12.12901 -12.00526 -11.81513 -11.61595 -11.59188 -11.37103 -11.09865 -10.84331 -10.77576 -10.72090 -10.49707 -10.23498 -9.88171 -9.56068 -8.91251 -8.68560 -8.54133 -8.04649 -7.89727 -6.08546 -4.06001 0.97413 1.28326 1.97194 2.20474 2.65369 3.05719 3.28204 3.32642 3.35946 3.47722 3.78459 3.87898 4.39445 4.62292 4.75627 4.82571 4.96965 5.08092 5.11569 5.24683 5.28267 5.37295 5.40028 5.42899 5.53835 5.65560 5.73765 6.03558 6.12743 6.15034 6.18468 6.32705 6.38668 6.41017 6.65917 6.80702 7.03291 7.11127 7.32108 7.52801 7.78976 8.09679 8.40000 8.51551 8.91539 9.51239 11.05004 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003717 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.208429 B = 7532.132067 C = 9092.280550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.553 5.553 4 C 0.202 3.798 5 C -0.514 4.514 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.511 3.489 14 O -0.555 6.555 15 C 0.489 3.511 16 O -0.426 6.426 17 N -0.663 5.663 18 C 0.208 3.792 19 C -0.144 4.144 20 C -0.050 4.050 21 C -0.088 4.088 22 Cl -0.065 7.065 23 C 0.156 3.844 24 O -0.305 6.305 25 C 0.025 3.975 26 C -0.227 4.227 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.418 0.582 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 6.622 14.221 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.283 5.283 4 C 0.081 3.919 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.122 4.122 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.436 6.436 15 C 0.271 3.729 16 O -0.293 6.293 17 N -0.312 5.312 18 C 0.112 3.888 19 C -0.165 4.165 20 C -0.069 4.069 21 C -0.116 4.116 22 Cl -0.036 7.036 23 C 0.109 3.891 24 O -0.217 6.217 25 C -0.070 4.070 26 C -0.249 4.249 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.423 6.994 13.757 16.054 hybrid contribution -0.360 0.139 -0.206 0.437 sum -4.782 7.133 13.551 16.043 Atomic orbital electron populations 1.22119 0.96133 1.01847 1.02185 1.21482 0.93900 0.82277 1.03553 1.47951 1.59349 1.13613 1.07429 1.20250 0.98876 0.92823 0.79909 1.21042 0.93400 1.33706 1.07111 0.91006 1.24724 0.94963 0.95373 0.97131 1.69882 1.16617 1.44424 1.22518 0.86910 0.81952 0.81572 0.79539 1.19760 1.21269 1.19248 1.19666 0.80023 0.86456 0.84537 1.90666 1.55514 1.66540 1.30835 1.20448 0.80948 0.87642 0.83872 1.91006 1.42914 1.66286 1.29060 1.43295 1.65610 1.11856 1.10406 1.17455 0.92539 0.83761 0.95073 1.21070 1.03191 0.91896 1.00350 1.20772 0.94233 0.95782 0.96109 1.20073 1.05462 0.87063 0.98976 1.98342 1.87927 1.18999 1.98375 1.18276 0.90847 0.91218 0.88790 1.86157 1.60031 1.39578 1.35970 1.23120 1.00557 0.93379 0.89969 1.20843 1.03711 0.95734 1.04589 0.91767 0.92592 0.92385 0.89565 0.90200 0.95017 0.93204 0.92608 0.74453 0.83681 0.83911 0.92284 0.92446 0.88054 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.82 6.12 -4.04 -0.02 1.79 16 3 N -0.55 -10.97 2.47 -175.61 -0.43 -11.40 16 4 C 0.20 4.53 3.84 -5.19 -0.02 4.51 16 5 C -0.51 -13.90 8.29 -34.44 -0.29 -14.19 16 6 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.51 9.92 7.68 -11.63 -0.09 9.84 16 14 O -0.55 -10.67 16.05 5.49 0.09 -10.58 16 15 C 0.49 9.28 7.42 -11.64 -0.09 9.19 16 16 O -0.43 -9.47 9.95 5.47 0.05 -9.41 16 17 N -0.66 -10.03 5.32 -10.31 -0.05 -10.08 16 18 C 0.21 3.07 6.24 -83.76 -0.52 2.55 16 19 C -0.14 -2.22 8.65 -39.35 -0.34 -2.56 16 20 C -0.05 -0.69 9.82 -39.60 -0.39 -1.08 16 21 C -0.09 -1.22 6.33 -39.32 -0.25 -1.46 16 22 Cl -0.07 -0.84 28.49 -51.86 -1.48 -2.32 16 23 C 0.16 2.07 6.68 -39.22 -0.26 1.81 16 24 O -0.30 -3.66 9.95 -19.50 -0.19 -3.85 16 25 C 0.02 0.20 9.81 101.05 0.99 1.19 16 26 C -0.23 -2.90 8.95 -39.24 -0.35 -3.25 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.08 1.29 7.37 -51.93 -0.38 0.90 16 32 H 0.03 0.69 7.09 -51.93 -0.37 0.33 16 33 H 0.05 1.15 5.35 -51.93 -0.28 0.87 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.42 5.30 8.30 -40.82 -0.34 4.96 16 36 H 0.15 2.38 6.54 -52.49 -0.34 2.04 16 37 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.06 0.45 7.65 -51.92 -0.40 0.05 16 39 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.14 1.42 6.30 -52.49 -0.33 1.09 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -32.39 361.31 -6.77 -39.16 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.96 Total: 4.42 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.35 Total: 8.65 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.29 Total: -47.73 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.39 -6.77 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279457443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.854 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds