Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47022 * 2 1 4 4 C 1.46498 * 119.99783 * 274.46566 * 3 2 1 5 5 C 1.50703 * 109.46847 * 264.95502 * 4 3 2 6 6 H 1.07991 * 120.00262 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99717 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99785 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46907 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47476 * 209.99832 * 9 7 5 12 12 H 1.48497 * 109.47430 * 330.00563 * 9 7 5 13 13 C 1.34782 * 120.00223 * 94.46443 * 3 2 1 14 14 O 1.21360 * 119.99703 * 354.63118 * 13 3 2 15 15 C 1.49343 * 120.00105 * 174.63147 * 13 3 2 16 16 O 1.21379 * 119.99922 * 354.43466 * 15 13 3 17 17 N 1.34775 * 120.00214 * 174.44118 * 15 13 3 18 18 C 1.39753 * 120.00435 * 184.99487 * 17 15 13 19 19 C 1.38969 * 120.03173 * 35.15833 * 18 17 15 20 20 C 1.38126 * 120.03969 * 180.02562 * 19 18 17 21 21 C 1.38304 * 120.11725 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 119.96088 * 179.97438 * 21 20 19 23 23 C 1.38869 * 120.07608 * 359.97438 * 21 20 19 24 24 O 1.35925 * 120.02321 * 179.97438 * 23 21 20 25 25 C 1.42898 * 117.00037 * 179.97438 * 24 23 21 26 26 C 1.38581 * 119.95440 * 0.23766 * 23 21 20 27 27 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47027 * 300.00126 * 1 2 3 29 29 H 1.08993 * 109.47202 * 60.00036 * 1 2 3 30 30 H 1.08996 * 109.47181 * 239.99603 * 2 1 3 31 31 H 1.09001 * 109.47052 * 119.99677 * 2 1 3 32 32 H 1.08991 * 109.47258 * 24.95819 * 4 3 2 33 33 H 1.09004 * 109.46907 * 144.95815 * 4 3 2 34 34 H 0.96999 * 119.99729 * 179.97438 * 8 7 5 35 35 H 0.97009 * 119.99598 * 5.00160 * 17 15 13 36 36 H 1.08000 * 119.98171 * 0.02562 * 19 18 17 37 37 H 1.07995 * 119.94044 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.46688 * 59.99855 * 25 24 23 39 39 H 1.09005 * 109.47410 * 300.00316 * 25 24 23 40 40 H 1.09000 * 109.47019 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.05372 * 179.74950 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1047 -1.2649 5 6 3.5921 1.9828 -1.7465 6 1 4.3117 1.4222 -1.1685 7 6 3.9748 2.5863 -2.9257 8 7 5.2163 2.4795 -3.3462 9 14 2.7299 3.5554 -3.9259 10 1 2.7385 4.9739 -3.4865 11 1 3.0859 3.4810 -5.3657 12 1 1.3756 2.9820 -3.7205 13 6 2.3286 1.9864 1.1637 14 8 2.1122 1.4235 2.2168 15 6 2.9387 3.3495 1.1571 16 8 3.2483 3.8707 0.1055 17 7 3.1457 4.0008 2.3187 18 6 3.6189 5.3158 2.3079 19 6 3.2205 6.1901 1.3038 20 6 3.6884 7.4896 1.2927 21 6 4.5546 7.9238 2.2797 22 17 5.1407 9.5577 2.2614 23 6 4.9558 7.0542 3.2853 24 8 5.8075 7.4819 4.2545 25 6 6.1774 6.5338 5.2576 26 6 4.4917 5.7485 3.2969 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4961 1.6796 -2.0092 33 1 1.9259 3.1563 -1.1132 34 1 5.4855 2.9037 -4.1760 35 1 2.9663 3.5568 3.1623 36 1 2.5445 5.8533 0.5318 37 1 3.3781 8.1676 0.5115 38 1 6.6711 5.6826 4.7886 39 1 5.2848 6.1925 5.7819 40 1 6.8590 7.0029 5.9672 41 1 4.8059 5.0696 4.0760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279457443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -83.482014 kcal Electronic energy + Delta-G solvation = -27471.953190 eV Core-core repulsion = 23378.580761 eV Total energy + Delta-G solvation = -4093.372429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22597 -41.16179 -39.86514 -38.44420 -37.62604 -37.21935 -35.51167 -34.63676 -32.21693 -31.48555 -30.82679 -29.61447 -28.18077 -26.48004 -24.61908 -24.15848 -23.65071 -22.45631 -20.81657 -19.58432 -19.10365 -18.82618 -18.01080 -17.59094 -17.42337 -16.85767 -16.77043 -16.73689 -16.50119 -15.98089 -15.35809 -15.21435 -15.08981 -14.71917 -14.60668 -14.36201 -14.26392 -13.94470 -13.63534 -13.44841 -13.23547 -13.14582 -12.72407 -12.66283 -12.55165 -12.41822 -12.29879 -12.21006 -12.07390 -11.86901 -11.83684 -11.65029 -11.10585 -10.71897 -10.39271 -9.75613 -9.64308 -9.04612 -8.23168 -6.24419 -0.20557 0.20456 0.53002 1.12591 1.30189 1.39312 1.43069 1.48694 2.10936 2.18789 2.39356 2.47657 2.54935 3.14752 3.29506 3.65083 3.92554 4.01572 4.13795 4.22462 4.33481 4.33824 4.40148 4.43389 4.49118 4.66413 4.68565 4.75390 4.85942 4.91996 5.00603 5.05574 5.06447 5.20893 5.31508 5.44291 5.51122 5.58398 6.00242 6.09722 6.19117 6.37434 6.70362 6.71829 6.98033 7.36888 8.94163 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003717 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.208429 B = 7532.132067 C = 9092.280550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.561 5.561 4 C 0.214 3.786 5 C -0.504 4.504 6 H 0.024 0.976 7 C 0.021 3.979 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.235 1.235 13 C 0.508 3.492 14 O -0.552 6.552 15 C 0.490 3.510 16 O -0.468 6.468 17 N -0.644 5.644 18 C 0.188 3.812 19 C -0.161 4.161 20 C -0.051 4.051 21 C -0.097 4.097 22 Cl -0.058 7.058 23 C 0.155 3.845 24 O -0.315 6.315 25 C 0.013 3.987 26 C -0.217 4.217 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.430 0.570 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 6.974 15.527 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.292 5.292 4 C 0.092 3.908 5 C -0.543 4.543 6 H 0.043 0.957 7 C -0.177 4.177 8 N -0.591 5.591 9 Si 0.760 3.240 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.158 1.158 13 C 0.290 3.710 14 O -0.433 6.433 15 C 0.272 3.728 16 O -0.338 6.338 17 N -0.293 5.293 18 C 0.093 3.907 19 C -0.182 4.182 20 C -0.071 4.071 21 C -0.125 4.125 22 Cl -0.029 7.029 23 C 0.108 3.892 24 O -0.228 6.228 25 C -0.081 4.081 26 C -0.238 4.238 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.270 0.730 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.967 7.325 15.141 17.847 hybrid contribution 0.236 0.029 -0.401 0.466 sum -5.731 7.354 14.741 17.442 Atomic orbital electron populations 1.22042 0.93444 1.03733 1.01976 1.21737 0.96083 0.80495 1.03588 1.48004 1.59752 1.14781 1.06614 1.19949 0.96024 0.93507 0.81304 1.21182 0.94820 1.32038 1.06252 0.95733 1.25600 0.96827 0.96637 0.98611 1.70047 1.19155 1.46499 1.23385 0.85889 0.80839 0.79764 0.77497 1.19921 1.21191 1.15835 1.19802 0.79890 0.86740 0.84545 1.90655 1.55453 1.66653 1.30568 1.20470 0.80509 0.87460 0.84342 1.90987 1.45130 1.67093 1.30555 1.43081 1.64457 1.11938 1.09837 1.17608 0.93762 0.83323 0.95977 1.21051 1.03824 0.92824 1.00472 1.20896 0.94104 0.95479 0.96574 1.20256 1.05410 0.87629 0.99190 1.98340 1.87802 1.18434 1.98360 1.18382 0.90749 0.91142 0.88968 1.86161 1.59401 1.41018 1.36249 1.23468 1.01872 0.93252 0.89479 1.21031 1.02434 0.96002 1.04307 0.88842 0.92973 0.92327 0.89722 0.90043 0.93367 0.93044 0.92750 0.72993 0.85232 0.82543 0.91967 0.90792 0.85748 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 3.24 6.12 86.38 0.53 3.76 16 3 N -0.56 -21.95 2.47 -827.86 -2.04 -23.99 16 4 C 0.21 9.48 3.84 85.63 0.33 9.81 16 5 C -0.50 -27.88 8.29 25.60 0.21 -27.66 16 6 H 0.02 1.55 8.06 -2.92 -0.02 1.52 16 7 C 0.02 1.18 5.47 84.66 0.46 1.64 16 8 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 9 Si 0.94 42.98 27.47 68.60 1.88 44.86 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 13 C 0.51 19.52 7.68 87.24 0.67 20.19 16 14 O -0.55 -20.62 16.05 -3.28 -0.05 -20.67 16 15 C 0.49 18.66 7.42 87.24 0.65 19.31 16 16 O -0.47 -21.20 9.95 -3.34 -0.03 -21.23 16 17 N -0.64 -19.09 5.32 -304.87 -1.62 -20.71 16 18 C 0.19 5.46 6.24 38.19 0.24 5.70 16 19 C -0.16 -4.98 8.65 22.42 0.19 -4.79 16 20 C -0.05 -1.41 9.82 22.26 0.22 -1.19 16 21 C -0.10 -2.59 6.33 22.44 0.14 -2.45 16 22 Cl -0.06 -1.44 28.49 -2.72 -0.08 -1.52 16 23 C 0.16 3.90 6.68 22.50 0.15 4.05 16 24 O -0.32 -6.93 9.95 -92.71 -0.92 -7.85 16 25 C 0.01 0.17 9.81 113.37 1.11 1.29 16 26 C -0.22 -5.19 8.95 22.49 0.20 -4.98 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 31 H 0.08 2.53 7.37 -2.39 -0.02 2.51 16 32 H 0.05 2.00 7.09 -2.39 -0.02 1.98 16 33 H 0.05 2.33 5.35 -2.38 -0.01 2.32 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.43 10.33 8.30 -92.70 -0.77 9.56 16 36 H 0.13 4.40 6.54 -2.91 -0.02 4.38 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.06 0.79 7.65 -2.38 -0.02 0.77 16 39 H 0.07 0.74 7.67 -2.38 -0.02 0.72 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.17 2.95 6.30 -2.91 -0.02 2.93 16 Total: -1.00 -71.70 361.31 3.53 -68.16 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.26 Total: 20.25 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 5.84 Total: 21.62 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.37 Total: -103.62 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.01 Total: -49.76 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -71.70 3.53 -68.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279457443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.319 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds