Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47248 * 2 1 4 4 C 1.35979 * 116.99970 * 179.97438 * 3 2 1 5 5 C 1.38724 * 119.98312 * 0.02562 * 4 3 2 6 6 C 1.38067 * 120.02788 * 179.97438 * 5 4 3 7 7 C 1.38930 * 120.00393 * 359.97438 * 6 5 4 8 8 N 1.39860 * 120.01674 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00277 * 324.60798 * 8 7 6 10 10 O 1.21397 * 119.99762 * 5.11718 * 9 8 7 11 11 C 1.49333 * 120.00380 * 185.11380 * 9 8 7 12 12 O 1.21356 * 119.99931 * 359.86456 * 11 9 8 13 13 N 1.34776 * 119.99957 * 179.86238 * 11 9 8 14 14 C 1.46505 * 119.99982 * 354.34499 * 13 11 9 15 15 C 1.46498 * 119.99611 * 174.35251 * 13 11 9 16 16 C 1.50697 * 109.47658 * 89.99988 * 15 13 11 17 17 H 1.07996 * 119.99613 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99989 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00222 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99669 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47090 * 60.00232 * 20 18 16 22 22 H 1.48503 * 109.46624 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46918 * 299.99788 * 20 18 16 24 24 C 1.38898 * 119.96784 * 359.75181 * 7 6 5 25 25 C 1.38172 * 119.96242 * 0.50271 * 24 7 6 26 26 Cl 1.73601 * 119.99664 * 179.76944 * 25 24 7 27 27 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47116 * 299.99783 * 1 2 3 29 29 H 1.09006 * 109.46786 * 60.00220 * 1 2 3 30 30 H 1.09006 * 109.47333 * 239.99982 * 2 1 3 31 31 H 1.08995 * 109.47165 * 120.00038 * 2 1 3 32 32 H 1.07995 * 119.98269 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.99312 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00403 * 144.60865 * 8 7 6 35 35 H 1.09001 * 109.46617 * 84.06537 * 14 13 11 36 36 H 1.09001 * 109.46576 * 204.06244 * 14 13 11 37 37 H 1.08999 * 109.47226 * 324.06422 * 14 13 11 38 38 H 1.09004 * 109.46806 * 209.99819 * 15 13 11 39 39 H 1.08996 * 109.47392 * 329.98857 * 15 13 11 40 40 H 0.96993 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.02102 * 180.25210 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1991 0.4250 0.0005 6 6 5.5681 0.6048 0.0005 7 6 6.1002 1.8881 0.0000 8 7 7.4868 2.0706 0.0006 9 6 8.2788 1.2155 0.6775 10 8 7.7990 0.2353 1.2091 11 6 9.7465 1.4739 0.7735 12 8 10.2265 2.4525 0.2400 13 7 10.5380 0.6203 1.4527 14 6 9.9449 -0.4915 2.2001 15 6 11.9913 0.8044 1.4438 16 6 12.3922 1.6935 2.5926 17 1 11.6396 2.0830 3.2621 18 6 13.7198 2.0099 2.7888 19 7 14.6363 1.5352 1.9738 20 14 14.2166 3.1127 4.2124 21 1 13.8046 2.4837 5.4929 22 1 15.6898 3.2991 4.2033 23 1 13.5503 4.4323 4.0721 24 6 5.2544 2.9899 -0.0057 25 6 3.8847 2.8085 -0.0004 26 17 2.8268 4.1849 -0.0015 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7857 -0.5727 0.0005 33 1 6.2252 -0.2524 0.0001 34 1 7.8787 2.8125 -0.4862 35 1 9.7711 -1.3304 1.5262 36 1 10.6248 -0.7987 2.9948 37 1 8.9978 -0.1726 2.6352 38 1 12.4808 -0.1642 1.5461 39 1 12.2933 1.2665 0.5040 40 1 15.5702 1.7580 2.1116 41 1 5.6672 3.9879 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283199693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -91.162826 kcal Electronic energy + Delta-G solvation = -26351.551563 eV Core-core repulsion = 22257.846069 eV Total energy + Delta-G solvation = -4093.705494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23650 -41.14397 -39.85492 -38.58119 -37.54230 -36.98179 -35.48031 -34.64037 -32.67166 -31.93256 -30.25984 -29.70801 -27.71933 -26.32137 -25.16697 -24.52645 -23.14407 -22.46171 -20.99517 -19.49164 -19.03576 -18.73067 -18.56470 -17.46586 -17.35963 -17.10584 -16.96089 -16.53896 -16.14262 -15.85847 -15.38545 -15.16153 -14.89472 -14.85182 -14.69116 -14.24258 -13.91063 -13.82527 -13.59817 -13.40358 -13.34829 -13.22288 -13.03572 -12.87341 -12.67449 -12.60677 -12.28223 -12.22602 -12.11479 -11.88437 -11.79644 -11.74483 -11.02253 -10.64824 -10.39925 -9.98475 -9.63122 -8.91128 -8.24480 -6.38764 -0.12263 0.01380 0.50426 1.00352 1.34846 1.39719 1.42438 1.50455 2.08994 2.12509 2.37104 2.50777 2.58404 3.06146 3.26281 3.64957 3.82897 4.00821 4.09572 4.16218 4.25376 4.36995 4.41985 4.45568 4.55176 4.70227 4.85320 4.86823 4.92526 4.97850 5.06169 5.07481 5.13841 5.17189 5.27766 5.42034 5.54098 5.69696 5.92037 5.99414 6.25648 6.36859 6.63843 6.69234 6.97580 7.31414 8.82791 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.002240 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.896183 B =12495.380594 C =13199.942783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.318 6.318 4 C 0.127 3.873 5 C -0.173 4.173 6 C -0.078 4.078 7 C 0.105 3.895 8 N -0.634 5.634 9 C 0.522 3.478 10 O -0.504 6.504 11 C 0.488 3.512 12 O -0.555 6.555 13 N -0.572 5.572 14 C 0.081 3.919 15 C 0.257 3.743 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.276 1.276 24 C -0.090 4.090 25 C -0.065 4.065 26 Cl -0.054 7.054 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.429 0.571 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.012 0.988 40 H 0.269 0.731 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.873 -4.056 -4.854 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.231 6.231 4 C 0.080 3.920 5 C -0.192 4.192 6 C -0.098 4.098 7 C 0.011 3.989 8 N -0.281 5.281 9 C 0.305 3.695 10 O -0.379 6.379 11 C 0.270 3.730 12 O -0.434 6.434 13 N -0.303 5.303 14 C -0.060 4.060 15 C 0.136 3.864 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.111 4.111 25 C -0.093 4.093 26 Cl -0.025 7.025 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.269 0.731 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -27.956 -4.027 -4.753 28.642 hybrid contribution 1.033 0.934 0.333 1.431 sum -26.924 -3.093 -4.419 27.459 Atomic orbital electron populations 1.21796 0.91507 1.04162 1.03148 1.23173 0.96954 0.80388 1.02786 1.86163 1.17291 1.31632 1.88050 1.18750 0.83955 0.92197 0.97104 1.21309 0.92530 0.99002 1.06331 1.21302 0.95427 0.96502 0.96588 1.17550 0.81766 0.94043 1.05551 1.42981 1.04377 1.31239 1.49512 1.20035 0.87203 0.83404 0.78861 1.90667 1.75482 1.27063 1.44666 1.20149 0.87538 0.83919 0.81391 1.90725 1.76023 1.28209 1.48465 1.48112 1.08352 1.27698 1.46115 1.22191 0.99324 0.88203 0.96308 1.19044 0.73985 0.96719 0.96634 1.21584 0.92931 1.31174 1.12804 0.92870 1.25802 0.96245 0.97374 0.99349 1.70018 1.01729 1.45745 1.38799 0.85480 0.77211 0.78899 0.79317 1.18787 1.20252 1.20173 1.20731 0.90054 0.99590 1.00676 1.19913 0.90692 0.86909 1.11778 1.98365 1.65475 1.41519 1.97112 0.88138 0.92030 0.91857 0.90435 0.90753 0.81579 0.83674 0.73145 0.91060 0.91131 0.89047 0.94662 0.96943 0.92218 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.04 0.44 5.46 71.98 0.39 0.83 16 3 O -0.32 -5.69 9.59 -93.32 -0.89 -6.59 16 4 C 0.13 2.50 6.68 22.53 0.15 2.65 16 5 C -0.17 -3.05 9.03 22.35 0.20 -2.85 16 6 C -0.08 -1.70 8.69 22.40 0.19 -1.50 16 7 C 0.10 2.43 6.30 38.18 0.24 2.67 16 8 N -0.63 -16.53 5.32 -304.75 -1.62 -18.15 16 9 C 0.52 16.74 7.61 87.23 0.66 17.41 16 10 O -0.50 -15.82 10.71 -3.39 -0.04 -15.85 16 11 C 0.49 20.04 7.72 87.23 0.67 20.71 16 12 O -0.55 -26.15 16.12 -3.27 -0.05 -26.20 16 13 N -0.57 -24.61 2.86 -852.86 -2.44 -27.04 16 14 C 0.08 2.77 9.27 127.77 1.18 3.95 16 15 C 0.26 13.43 5.09 85.63 0.44 13.86 16 16 C -0.55 -30.81 9.39 25.60 0.24 -30.57 16 17 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 18 C 0.01 0.68 5.46 84.65 0.46 1.14 16 19 N -0.92 -54.21 13.29 21.45 0.28 -53.93 16 20 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.09 -1.86 9.74 22.41 0.22 -1.65 16 25 C -0.06 -1.37 6.33 22.40 0.14 -1.23 16 26 Cl -0.05 -1.09 28.50 -2.72 -0.08 -1.17 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.08 0.62 7.66 -2.38 -0.02 0.60 16 31 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 32 H 0.17 1.96 6.29 -2.91 -0.02 1.94 16 33 H 0.15 3.33 6.23 -2.91 -0.02 3.31 16 34 H 0.43 10.29 8.30 -92.71 -0.77 9.52 16 35 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 36 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 37 H 0.09 2.95 5.84 -2.39 -0.01 2.94 16 38 H 0.04 1.86 8.07 -2.38 -0.02 1.84 16 39 H 0.01 0.73 7.51 -2.39 -0.02 0.71 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.16 366.59 3.44 -64.72 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.31 Total: 13.15 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 5.94 Total: 25.00 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -3.77 Total: -99.12 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.98 Total: -48.64 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -68.16 3.44 -64.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283199693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.446 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds