Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46995 * 2 1 4 4 C 1.35956 * 117.00263 * 180.02562 * 3 2 1 5 5 C 1.38548 * 120.07526 * 0.02562 * 4 3 2 6 6 C 1.38341 * 120.00419 * 180.02562 * 5 4 3 7 7 Cl 1.73601 * 119.91455 * 179.97438 * 6 5 4 8 8 C 1.38415 * 120.17135 * 359.97438 * 6 5 4 9 9 C 1.38156 * 120.15965 * 359.97438 * 8 6 5 10 10 C 1.38792 * 119.99182 * 0.03043 * 9 8 6 11 11 N 1.39922 * 120.08738 * 180.25030 * 10 9 8 12 12 C 1.34772 * 119.99331 * 326.43830 * 11 10 9 13 13 O 1.21390 * 120.00302 * 5.16769 * 12 11 10 14 14 C 1.49331 * 119.99705 * 185.16557 * 12 11 10 15 15 O 1.21366 * 119.99661 * 359.72212 * 14 12 11 16 16 N 1.34775 * 120.00304 * 179.72214 * 14 12 11 17 17 C 1.46500 * 119.99817 * 354.33880 * 16 14 12 18 18 C 1.46498 * 120.00099 * 174.34320 * 16 14 12 19 19 C 1.50703 * 109.47301 * 89.99887 * 18 16 14 20 20 H 1.08009 * 119.99864 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31515 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99951 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46592 * 90.00568 * 23 21 19 25 25 H 1.48496 * 109.47279 * 209.99971 * 23 21 19 26 26 H 1.48493 * 109.47167 * 330.00721 * 23 21 19 27 27 H 1.09000 * 109.46684 * 299.99608 * 1 2 3 28 28 H 1.09003 * 109.46986 * 59.99725 * 1 2 3 29 29 H 1.08998 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46992 * 240.00716 * 2 1 3 31 31 H 1.08997 * 109.47367 * 120.00450 * 2 1 3 32 32 H 1.07995 * 119.99752 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.92299 * 180.02562 * 8 6 5 34 34 H 1.08004 * 120.00947 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00297 * 146.43381 * 11 10 9 36 36 H 1.08996 * 109.47100 * 84.06225 * 17 16 14 37 37 H 1.08999 * 109.47059 * 204.06820 * 17 16 14 38 38 H 1.09006 * 109.47466 * 324.06202 * 17 16 14 39 39 H 1.09002 * 109.47053 * 209.99498 * 18 16 14 40 40 H 1.08999 * 109.47103 * 329.99688 * 18 16 14 41 41 H 0.96994 * 120.00183 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1997 0.4279 -0.0016 6 6 5.5710 0.6110 -0.0016 7 17 6.6282 -0.7659 -0.0023 8 6 6.1022 1.8891 -0.0011 9 6 5.2655 2.9885 -0.0011 10 6 3.8887 2.8126 -0.0010 11 7 3.0395 3.9247 -0.0063 12 6 3.4033 5.0533 0.6342 13 8 4.5056 5.1383 1.1354 14 6 2.4503 6.1992 0.7272 15 8 1.3501 6.1160 0.2217 16 7 2.8119 7.3258 1.3725 17 6 4.0889 7.3821 2.0884 18 6 1.9281 8.4940 1.3583 19 6 0.9851 8.4249 2.5319 20 1 1.0387 7.5936 3.2194 21 6 0.0535 9.4223 2.7273 22 7 -0.7690 9.3623 3.7518 23 14 -0.0395 10.8596 1.5378 24 1 -0.9853 10.5334 0.4404 25 1 -0.5149 12.0682 2.2580 26 1 1.3074 11.1197 0.9695 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7883 -0.5706 -0.0016 33 1 7.1732 2.0274 -0.0015 34 1 5.6826 3.9848 -0.0011 35 1 2.1891 3.8833 -0.4710 36 1 4.8865 7.6337 1.3893 37 1 4.0354 8.1424 2.8676 38 1 4.2950 6.4121 2.5409 39 1 2.5260 9.4029 1.4257 40 1 1.3545 8.5043 0.4315 41 1 -1.4242 10.0641 3.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283423586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -67.440178 kcal Electronic energy + Delta-G solvation = -26864.248175 eV Core-core repulsion = 22771.571372 eV Total energy + Delta-G solvation = -4092.676803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20519 -40.04784 -38.39264 -37.75126 -36.64686 -35.61298 -34.40725 -32.53825 -32.12823 -30.56242 -29.37604 -28.68500 -26.32103 -24.79822 -24.43598 -22.70189 -22.32792 -21.24847 -19.63525 -18.74054 -17.66983 -17.26128 -17.05136 -16.53754 -16.30809 -15.95348 -15.58122 -15.50566 -14.96726 -14.51948 -14.40188 -13.99452 -13.87795 -13.53648 -13.27743 -12.96248 -12.92037 -12.75934 -12.47220 -12.38767 -12.33991 -12.05202 -11.81282 -11.69741 -11.48356 -11.26457 -11.06621 -10.97943 -10.81294 -10.58135 -10.34743 -10.18564 -9.59534 -9.04480 -8.88643 -8.64431 -8.10434 -7.87903 -6.13589 -4.13872 0.70839 1.01008 1.77813 1.80903 2.53336 2.80194 3.25849 3.28552 3.31692 3.33183 3.63514 3.88451 4.34477 4.41647 4.58515 4.60478 4.62345 4.75303 4.81175 4.91000 5.07579 5.18542 5.27028 5.44956 5.50692 5.51107 5.77084 5.82736 5.85118 5.92894 6.01732 6.08374 6.37173 6.46989 6.50976 6.75568 6.95129 7.05985 7.15087 7.50348 7.74277 8.00972 8.34527 8.56221 8.89608 9.44616 10.99563 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.002668 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.284825 B =10492.168545 C =11737.203654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.307 6.307 4 C 0.122 3.878 5 C -0.185 4.185 6 C -0.012 4.012 7 Cl -0.071 7.071 8 C -0.126 4.126 9 C -0.076 4.076 10 C 0.127 3.873 11 N -0.640 5.640 12 C 0.512 3.488 13 O -0.503 6.503 14 C 0.497 3.503 15 O -0.517 6.517 16 N -0.559 5.559 17 C 0.079 3.921 18 C 0.214 3.786 19 C -0.532 4.532 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.427 0.573 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.951 -19.835 -9.697 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.221 6.221 4 C 0.074 3.926 5 C -0.205 4.205 6 C -0.040 4.040 7 Cl -0.042 7.042 8 C -0.146 4.146 9 C -0.096 4.096 10 C 0.031 3.969 11 N -0.287 5.287 12 C 0.295 3.705 13 O -0.378 6.378 14 C 0.278 3.722 15 O -0.394 6.394 16 N -0.290 5.290 17 C -0.064 4.064 18 C 0.094 3.906 19 C -0.571 4.571 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.532 5.532 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.190 1.190 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.266 0.734 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.873 -19.590 -9.470 24.788 hybrid contribution -0.433 0.294 -0.575 0.778 sum 11.440 -19.296 -10.045 24.578 Atomic orbital electron populations 1.21795 0.92241 1.02956 1.04132 1.22868 0.96328 0.81347 1.01487 1.86130 1.17572 1.29915 1.88463 1.18557 0.83144 0.91891 0.99008 1.20844 0.91883 0.98644 1.09175 1.20613 0.90344 0.88511 1.04501 1.98368 1.65802 1.43098 1.96905 1.20886 1.00856 0.89694 1.03151 1.21248 0.90161 1.00697 0.97487 1.17198 0.90245 0.83888 1.05560 1.43067 1.22899 1.10612 1.52116 1.20863 0.87945 0.83901 0.77745 1.90660 1.21575 1.81108 1.44453 1.19481 0.86940 0.83600 0.82204 1.90763 1.20734 1.80323 1.47563 1.47769 1.20653 1.12854 1.47710 1.22077 0.83656 1.04072 0.96631 1.19884 0.89746 0.82034 0.98979 1.21259 1.16360 1.09594 1.09854 0.90553 1.24846 0.94868 0.97914 0.95246 1.69888 1.20310 1.34193 1.28821 0.86851 0.79121 0.82230 0.81508 1.19812 1.20935 1.18974 0.91086 0.91236 0.90260 0.91834 0.91774 0.84041 0.84280 0.82183 0.73406 0.92971 0.90867 0.89711 0.94319 0.94262 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.51 9.67 -19.60 -0.19 -3.70 16 4 C 0.12 1.42 6.70 -39.05 -0.26 1.16 16 5 C -0.19 -1.84 8.81 -39.43 -0.35 -2.19 16 6 C -0.01 -0.12 6.32 -39.48 -0.25 -0.37 16 7 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 8 C -0.13 -1.29 9.82 -39.55 -0.39 -1.67 16 9 C -0.08 -0.90 8.72 -39.41 -0.34 -1.24 16 10 C 0.13 1.65 6.34 -83.54 -0.53 1.12 16 11 N -0.64 -9.27 5.19 -10.18 -0.05 -9.32 16 12 C 0.51 8.57 7.62 -11.64 -0.09 8.49 16 13 O -0.50 -8.30 10.59 5.46 0.06 -8.24 16 14 C 0.50 10.14 7.72 -11.64 -0.09 10.05 16 15 O -0.52 -11.90 16.12 5.48 0.09 -11.81 16 16 N -0.56 -11.72 2.86 -183.51 -0.52 -12.24 16 17 C 0.08 1.35 9.26 59.85 0.55 1.90 16 18 C 0.21 5.11 4.16 -5.19 -0.02 5.09 16 19 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 20 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 21 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 23 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.97 6.07 -52.48 -0.32 1.65 16 35 H 0.43 5.99 8.01 -40.82 -0.33 5.67 16 36 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 38 H 0.08 1.44 5.85 -51.93 -0.30 1.13 16 39 H 0.04 0.87 7.13 -51.93 -0.37 0.50 16 40 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.48 362.82 -7.10 -39.58 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.93 Total: 3.68 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.62 Total: 8.85 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.20 Total: -48.03 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.48 -7.10 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283423586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.863 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds