Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46995 * 2 1 4 4 C 1.35956 * 117.00263 * 180.02562 * 3 2 1 5 5 C 1.38548 * 120.07526 * 0.02562 * 4 3 2 6 6 C 1.38341 * 120.00419 * 180.02562 * 5 4 3 7 7 Cl 1.73601 * 119.91455 * 179.97438 * 6 5 4 8 8 C 1.38415 * 120.17135 * 359.97438 * 6 5 4 9 9 C 1.38156 * 120.15965 * 359.97438 * 8 6 5 10 10 C 1.38792 * 119.99182 * 0.03043 * 9 8 6 11 11 N 1.39922 * 120.08738 * 180.25030 * 10 9 8 12 12 C 1.34772 * 119.99331 * 326.43830 * 11 10 9 13 13 O 1.21390 * 120.00302 * 5.16769 * 12 11 10 14 14 C 1.49331 * 119.99705 * 185.16557 * 12 11 10 15 15 O 1.21366 * 119.99661 * 359.72212 * 14 12 11 16 16 N 1.34775 * 120.00304 * 179.72214 * 14 12 11 17 17 C 1.46500 * 119.99817 * 354.33880 * 16 14 12 18 18 C 1.46498 * 120.00099 * 174.34320 * 16 14 12 19 19 C 1.50703 * 109.47301 * 89.99887 * 18 16 14 20 20 H 1.08009 * 119.99864 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31515 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99951 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46592 * 90.00568 * 23 21 19 25 25 H 1.48496 * 109.47279 * 209.99971 * 23 21 19 26 26 H 1.48493 * 109.47167 * 330.00721 * 23 21 19 27 27 H 1.09000 * 109.46684 * 299.99608 * 1 2 3 28 28 H 1.09003 * 109.46986 * 59.99725 * 1 2 3 29 29 H 1.08998 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46992 * 240.00716 * 2 1 3 31 31 H 1.08997 * 109.47367 * 120.00450 * 2 1 3 32 32 H 1.07995 * 119.99752 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.92299 * 180.02562 * 8 6 5 34 34 H 1.08004 * 120.00947 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00297 * 146.43381 * 11 10 9 36 36 H 1.08996 * 109.47100 * 84.06225 * 17 16 14 37 37 H 1.08999 * 109.47059 * 204.06820 * 17 16 14 38 38 H 1.09006 * 109.47466 * 324.06202 * 17 16 14 39 39 H 1.09002 * 109.47053 * 209.99498 * 18 16 14 40 40 H 1.08999 * 109.47103 * 329.99688 * 18 16 14 41 41 H 0.96994 * 120.00183 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1997 0.4279 -0.0016 6 6 5.5710 0.6110 -0.0016 7 17 6.6282 -0.7659 -0.0023 8 6 6.1022 1.8891 -0.0011 9 6 5.2655 2.9885 -0.0011 10 6 3.8887 2.8126 -0.0010 11 7 3.0395 3.9247 -0.0063 12 6 3.4033 5.0533 0.6342 13 8 4.5056 5.1383 1.1354 14 6 2.4503 6.1992 0.7272 15 8 1.3501 6.1160 0.2217 16 7 2.8119 7.3258 1.3725 17 6 4.0889 7.3821 2.0884 18 6 1.9281 8.4940 1.3583 19 6 0.9851 8.4249 2.5319 20 1 1.0387 7.5936 3.2194 21 6 0.0535 9.4223 2.7273 22 7 -0.7690 9.3623 3.7518 23 14 -0.0395 10.8596 1.5378 24 1 -0.9853 10.5334 0.4404 25 1 -0.5149 12.0682 2.2580 26 1 1.3074 11.1197 0.9695 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7883 -0.5706 -0.0016 33 1 7.1732 2.0274 -0.0015 34 1 5.6826 3.9848 -0.0011 35 1 2.1891 3.8833 -0.4710 36 1 4.8865 7.6337 1.3893 37 1 4.0354 8.1424 2.8676 38 1 4.2950 6.4121 2.5409 39 1 2.5260 9.4029 1.4257 40 1 1.3545 8.5043 0.4315 41 1 -1.4242 10.0641 3.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283423586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -89.050639 kcal Electronic energy + Delta-G solvation = -26865.185275 eV Core-core repulsion = 22771.571372 eV Total energy + Delta-G solvation = -4093.613903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34733 -41.18424 -39.71881 -38.68933 -37.57987 -37.04613 -35.70294 -34.64178 -32.79244 -31.44519 -30.74082 -30.16875 -27.78365 -26.28304 -25.32443 -24.11925 -23.13559 -22.49425 -20.99622 -19.67848 -19.18911 -18.87673 -18.48729 -17.49863 -17.42954 -17.14306 -17.01906 -16.40436 -16.38583 -16.15658 -15.40866 -15.21422 -15.04011 -14.67733 -14.58219 -14.41558 -13.95654 -13.77803 -13.68336 -13.62991 -13.47054 -13.23317 -13.13972 -12.91995 -12.62829 -12.50142 -12.31778 -12.19598 -12.03726 -11.96908 -11.75557 -11.67367 -11.30843 -10.83370 -10.43427 -9.81857 -9.62254 -9.00523 -8.34098 -6.41315 -0.26382 0.17643 0.44009 1.01108 1.22284 1.37058 1.39659 1.48637 2.03241 2.06233 2.31928 2.49649 2.50435 2.99817 3.21732 3.62724 3.87126 3.97805 4.04033 4.07722 4.19075 4.34978 4.38601 4.51103 4.61346 4.62711 4.72256 4.83623 4.84762 4.89276 4.92187 5.01024 5.09256 5.20632 5.23603 5.36240 5.41468 5.52931 5.83029 6.16330 6.20870 6.30367 6.59402 6.61690 6.91339 7.22768 8.82883 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.002668 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.284825 B =10492.168545 C =11737.203654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.328 6.328 4 C 0.120 3.880 5 C -0.180 4.180 6 C -0.010 4.010 7 Cl -0.056 7.056 8 C -0.125 4.125 9 C -0.079 4.079 10 C 0.096 3.904 11 N -0.630 5.630 12 C 0.520 3.480 13 O -0.502 6.502 14 C 0.490 3.510 15 O -0.553 6.553 16 N -0.569 5.569 17 C 0.080 3.920 18 C 0.220 3.780 19 C -0.542 4.542 20 H 0.026 0.974 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.950 3.050 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.234 1.234 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.427 0.573 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.847 -20.728 -11.223 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.243 6.243 4 C 0.072 3.928 5 C -0.200 4.200 6 C -0.038 4.038 7 Cl -0.027 7.027 8 C -0.144 4.144 9 C -0.099 4.099 10 C 0.002 3.998 11 N -0.276 5.276 12 C 0.303 3.697 13 O -0.377 6.377 14 C 0.272 3.728 15 O -0.432 6.432 16 N -0.299 5.299 17 C -0.062 4.062 18 C 0.099 3.901 19 C -0.580 4.580 20 H 0.045 0.955 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.772 3.228 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.157 1.157 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.824 -20.533 -10.997 27.086 hybrid contribution -1.008 0.342 -0.049 1.066 sum 12.816 -20.191 -11.045 26.342 Atomic orbital electron populations 1.21835 0.91964 1.04278 1.02967 1.23164 0.96612 0.80084 1.02991 1.86122 1.17542 1.32165 1.88420 1.18622 0.83605 0.91780 0.98771 1.21064 0.91721 0.99143 1.08070 1.20752 0.90682 0.88995 1.03355 1.98380 1.65314 1.42220 1.96750 1.21077 1.01693 0.89264 1.02345 1.21241 0.89900 1.01091 0.97650 1.17437 0.90562 0.83758 1.08046 1.42901 1.23070 1.10427 1.51187 1.20023 0.87263 0.83709 0.78705 1.90654 1.21025 1.81139 1.44885 1.20139 0.87144 0.84300 0.81222 1.90728 1.22423 1.81130 1.48895 1.47855 1.21413 1.12454 1.48214 1.22234 0.82655 1.04230 0.97064 1.19638 0.89761 0.84259 0.96436 1.21462 1.17852 1.08144 1.10533 0.95518 1.25876 0.94129 1.01377 0.97203 1.70049 1.21428 1.35723 1.31197 0.85683 0.80658 0.77823 0.78624 1.19723 1.20177 1.15660 0.92769 0.91862 0.87684 0.89793 0.90640 0.81767 0.82265 0.82769 0.73443 0.90097 0.90919 0.89624 0.91887 0.94900 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.64 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.30 9.67 -93.05 -0.90 -8.21 16 4 C 0.12 2.68 6.70 22.62 0.15 2.83 16 5 C -0.18 -3.17 8.81 22.37 0.20 -2.97 16 6 C -0.01 -0.18 6.32 22.34 0.14 -0.04 16 7 Cl -0.06 -0.84 28.95 -2.72 -0.08 -0.92 16 8 C -0.12 -2.27 9.82 22.29 0.22 -2.05 16 9 C -0.08 -1.78 8.72 22.38 0.20 -1.59 16 10 C 0.10 2.45 6.34 38.25 0.24 2.70 16 11 N -0.63 -18.43 5.19 -304.47 -1.58 -20.00 16 12 C 0.52 17.54 7.62 87.23 0.66 18.21 16 13 O -0.50 -16.26 10.59 -3.37 -0.04 -16.29 16 14 C 0.49 20.37 7.72 87.23 0.67 21.04 16 15 O -0.55 -26.28 16.12 -3.30 -0.05 -26.33 16 16 N -0.57 -23.92 2.86 -852.86 -2.44 -26.36 16 17 C 0.08 2.67 9.26 127.77 1.18 3.85 16 18 C 0.22 10.51 4.16 85.63 0.36 10.86 16 19 C -0.54 -31.63 9.94 25.60 0.25 -31.38 16 20 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 21 C 0.01 0.73 5.47 84.65 0.46 1.19 16 22 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 23 Si 0.95 43.08 27.47 68.60 1.88 44.97 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.84 7.66 -2.39 -0.02 0.83 16 31 H 0.08 0.89 7.66 -2.39 -0.02 0.87 16 32 H 0.16 2.05 6.30 -2.91 -0.02 2.03 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.15 3.66 6.07 -2.91 -0.02 3.64 16 35 H 0.43 12.37 8.01 -92.71 -0.74 11.62 16 36 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 37 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 38 H 0.09 2.86 5.85 -2.38 -0.01 2.85 16 39 H 0.06 2.71 7.13 -2.39 -0.02 2.69 16 40 H 0.03 1.62 6.93 -2.39 -0.02 1.60 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -72.56 362.82 3.26 -69.29 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.29 Total: 20.47 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 5.87 Total: 22.38 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.72 Total: -105.37 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.99 Total: -50.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -72.56 3.26 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283423586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.757 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds