Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 O 1.42900 * 109.47247 * 239.99855 * 2 1 3 5 5 C 1.35898 * 117.00048 * 84.83019 * 4 2 1 6 6 C 1.38755 * 120.05007 * 354.62573 * 5 4 2 7 7 C 1.38131 * 119.97223 * 180.02562 * 6 5 4 8 8 C 1.38271 * 120.06503 * 0.26062 * 7 6 5 9 9 C 1.38361 * 120.09824 * 359.48238 * 8 7 6 10 10 Cl 1.73600 * 119.98721 * 180.27714 * 9 8 7 11 11 C 1.38284 * 120.02922 * 0.51705 * 9 8 7 12 12 C 1.50694 * 109.46640 * 119.99651 * 2 1 3 13 13 O 1.21288 * 119.99757 * 120.00210 * 12 2 1 14 14 N 1.34776 * 120.00330 * 299.99720 * 12 2 1 15 15 N 1.40108 * 119.99848 * 180.02562 * 14 12 2 16 16 C 1.34774 * 119.99624 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00136 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00063 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47257 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.46817 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00486 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99665 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 60.00553 * 24 22 20 26 26 H 1.48507 * 109.47193 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47560 * 300.00254 * 24 22 20 28 28 H 1.08999 * 109.47170 * 300.00436 * 1 2 3 29 29 H 1.09008 * 109.46793 * 60.00145 * 1 2 3 30 30 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.01576 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.97070 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.94794 * 179.72083 * 8 7 6 34 34 H 1.07999 * 120.03137 * 179.76615 * 11 9 8 35 35 H 0.96998 * 119.99902 * 0.02562 * 14 12 2 36 36 H 0.96994 * 120.00008 * 0.02562 * 15 14 12 37 37 H 1.09004 * 109.46796 * 299.99887 * 18 16 15 38 38 H 1.09004 * 109.47023 * 59.99695 * 18 16 15 39 39 H 1.08989 * 109.47093 * 300.00101 * 19 18 16 40 40 H 1.09004 * 109.47042 * 60.00087 * 19 18 16 41 41 H 0.96999 * 120.00281 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1092 0.0616 -2.3050 6 6 1.6548 1.3725 -2.3288 7 6 1.7596 2.1182 -3.4867 8 6 2.3120 1.5581 -4.6239 9 6 2.7708 0.2529 -4.6018 10 17 3.4703 -0.4452 -6.0290 11 6 2.6679 -0.4973 -3.4447 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2498 2.4546 15 7 2.1741 -0.9100 3.5986 16 6 1.8480 -0.4497 4.8226 17 8 1.1504 0.5362 4.9338 18 6 2.3512 -1.1594 6.0531 19 6 1.8410 -0.4382 7.3023 20 6 2.3437 -1.1483 8.5328 21 1 2.9653 -2.0260 8.4338 22 6 2.0110 -0.6769 9.7850 23 7 1.2545 0.3921 9.9056 24 14 2.6347 -1.5567 11.3103 25 1 4.1197 -1.5560 11.3097 26 1 2.1394 -0.8568 12.5228 27 1 2.1403 -2.9570 11.3110 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2194 1.8095 -1.4423 32 1 1.4056 3.1384 -3.5054 33 1 2.3889 2.1414 -5.5294 34 1 3.0225 -1.5173 -3.4285 35 1 1.1487 0.5387 2.5435 36 1 2.7322 -1.6982 3.5096 37 1 1.9889 -2.1875 6.0532 38 1 3.4412 -1.1583 6.0530 39 1 2.2036 0.5896 7.3019 40 1 0.7510 -0.4390 7.3026 41 1 1.0201 0.7235 10.7866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292001223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -86.420628 kcal Electronic energy + Delta-G solvation = -25439.966674 eV Core-core repulsion = 21346.466817 eV Total energy + Delta-G solvation = -4093.499857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98297 -41.14697 -40.11167 -38.69373 -37.29832 -36.56083 -35.55830 -34.08373 -33.14071 -31.97279 -31.27743 -30.70823 -27.71302 -25.94356 -24.20281 -23.84771 -23.33316 -22.38288 -21.20433 -19.70624 -19.21287 -18.77091 -18.34250 -17.36247 -17.16417 -17.05309 -16.71828 -16.62225 -16.45784 -15.95908 -15.80346 -15.54714 -15.05953 -14.66714 -14.50616 -14.37041 -14.23025 -14.22113 -13.56490 -13.26077 -13.21483 -12.81268 -12.79932 -12.71810 -12.52586 -12.48468 -12.20867 -11.99929 -11.92006 -11.89762 -11.67194 -11.38852 -11.31340 -10.94864 -10.53590 -9.92437 -9.55754 -9.35944 -8.16724 -6.29666 0.05773 0.25615 0.50608 1.02185 1.07621 1.45031 1.48058 1.55718 1.60981 2.02604 2.44072 2.57436 2.84234 3.17118 3.33888 3.57878 3.72864 3.76621 3.94058 4.00688 4.09907 4.15091 4.39382 4.46111 4.52724 4.56533 4.60295 4.77957 5.01819 5.06299 5.11520 5.22943 5.31207 5.43121 5.46423 5.52406 5.63253 5.64302 5.86469 6.17668 6.19217 6.39371 6.70900 6.88602 7.23024 7.40314 8.95268 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.001545 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.539540 B =18120.620766 C =18557.552485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 H 0.138 0.862 4 O -0.306 6.306 5 C 0.128 3.872 6 C -0.205 4.205 7 C -0.059 4.059 8 C -0.149 4.149 9 C -0.006 4.006 10 Cl -0.066 7.066 11 C -0.163 4.163 12 C 0.517 3.483 13 O -0.559 6.559 14 N -0.511 5.511 15 N -0.522 5.522 16 C 0.522 3.478 17 O -0.571 6.571 18 C -0.110 4.110 19 C 0.042 3.958 20 C -0.545 4.545 21 H 0.076 0.924 22 C -0.003 4.003 23 N -0.934 5.934 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.439 0.561 36 H 0.439 0.561 37 H 0.112 0.888 38 H 0.112 0.888 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 2.976 -32.213 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 H 0.155 0.845 4 O -0.219 6.219 5 C 0.083 3.917 6 C -0.223 4.223 7 C -0.077 4.077 8 C -0.168 4.168 9 C -0.033 4.033 10 Cl -0.037 7.037 11 C -0.182 4.182 12 C 0.303 3.697 13 O -0.435 6.435 14 N -0.260 5.260 15 N -0.272 5.272 16 C 0.311 3.689 17 O -0.448 6.448 18 C -0.151 4.151 19 C 0.005 3.995 20 C -0.583 4.583 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.574 5.574 24 Si 0.794 3.206 25 H -0.189 1.189 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.283 0.717 36 H 0.282 0.718 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.261 2.808 -32.198 32.321 hybrid contribution 0.218 -0.366 0.898 0.994 sum 0.479 2.442 -31.300 31.398 Atomic orbital electron populations 1.22460 0.89948 1.04803 1.06248 1.22172 0.97243 0.97337 0.81028 0.84482 1.86157 1.81505 1.38009 1.16239 1.18929 0.95893 0.91184 0.85739 1.21755 1.05616 0.93016 1.01951 1.21333 0.94974 1.00990 0.90415 1.21325 1.01196 0.93143 1.01140 1.20701 1.00111 0.94593 0.87871 1.98385 1.82771 1.84679 1.37866 1.20287 1.05240 1.01831 0.90837 1.20834 0.80509 0.85046 0.83337 1.90764 1.38992 1.27363 1.86376 1.44720 1.53026 1.30848 0.97376 1.45193 1.53969 1.31170 0.96869 1.21691 0.79410 0.84447 0.83395 1.90684 1.39549 1.28021 1.86570 1.21652 1.03332 1.00934 0.89213 1.18714 0.95004 0.94572 0.91245 1.21677 1.31973 1.13066 0.91592 0.90629 1.26041 0.95220 0.95735 1.03052 1.70141 1.38021 1.24729 1.24511 0.85435 0.78995 0.78649 0.77531 1.18911 1.21414 1.18917 0.88096 0.88063 0.91521 0.82020 0.81251 0.82866 0.84997 0.71676 0.71765 0.87021 0.87027 0.99179 0.99182 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.07 71.98 0.65 -1.12 16 2 C 0.08 1.22 2.65 29.85 0.08 1.30 16 3 H 0.14 1.16 6.32 -2.38 -0.02 1.14 16 4 O -0.31 -6.17 9.33 -73.36 -0.68 -6.86 16 5 C 0.13 2.12 6.60 22.50 0.15 2.27 16 6 C -0.21 -2.09 8.24 22.37 0.18 -1.90 16 7 C -0.06 -0.47 10.04 22.25 0.22 -0.24 16 8 C -0.15 -1.57 9.83 22.31 0.22 -1.35 16 9 C -0.01 -0.09 6.32 22.31 0.14 0.05 16 10 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.06 16 11 C -0.16 -2.88 9.77 22.39 0.22 -2.66 16 12 C 0.52 11.60 7.35 87.66 0.64 12.25 16 13 O -0.56 -17.20 16.34 15.98 0.26 -16.94 16 14 N -0.51 -11.50 6.15 -173.53 -1.07 -12.57 16 15 N -0.52 -14.03 6.26 -173.53 -1.09 -15.12 16 16 C 0.52 18.06 7.95 87.66 0.70 18.75 16 17 O -0.57 -24.13 15.82 -3.05 -0.05 -24.18 16 18 C -0.11 -4.04 5.64 29.85 0.17 -3.88 16 19 C 0.04 2.21 4.26 29.85 0.13 2.34 16 20 C -0.55 -29.73 9.11 25.60 0.23 -29.50 16 21 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 22 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 23 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 24 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 28 H 0.10 0.71 7.56 -2.39 -0.02 0.69 16 29 H 0.10 0.63 6.90 -2.38 -0.02 0.62 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.16 0.77 5.43 -2.91 -0.02 0.75 16 32 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.44 8.46 7.42 -213.32 -1.58 6.88 16 36 H 0.44 10.55 8.00 -213.32 -1.71 8.85 16 37 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 38 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 39 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 40 H -0.01 -0.60 8.10 -2.38 -0.02 -0.62 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -79.01 371.74 1.61 -77.40 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -2.19 Total: 14.39 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.20 Total: -3.37 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.87 Total: -84.56 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.47 Total: -47.98 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -79.01 1.61 -77.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292001223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.023 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds