Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47223 * 300.00220 * 3 2 1 6 6 H 1.48504 * 109.46876 * 60.00157 * 3 2 1 7 7 C 1.37881 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00412 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99655 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46926 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97286 * 125.00375 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73197 * 11 10 9 13 13 C 1.40425 * 107.86943 * 0.24295 * 12 11 10 14 14 N 1.40079 * 125.97528 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00156 * 0.02562 * 14 13 12 16 16 O 1.21574 * 120.00205 * 359.97438 * 15 14 13 17 17 C 1.47739 * 120.00220 * 180.02562 * 15 14 13 18 18 C 1.40622 * 120.26791 * 359.97438 * 17 15 14 19 19 N 1.30787 * 121.52952 * 180.02562 * 18 17 15 20 20 C 1.33793 * 121.72476 * 0.02562 * 19 18 17 21 21 C 1.40753 * 120.82276 * 179.97438 * 20 19 18 22 22 F 1.35094 * 120.11832 * 0.02562 * 21 20 19 23 23 C 1.36340 * 119.76313 * 180.02562 * 21 20 19 24 24 C 1.39298 * 121.06026 * 359.94970 * 23 21 20 25 25 C 1.36142 * 120.86807 * 0.05042 * 24 23 21 26 26 C 1.40547 * 119.67074 * 359.97301 * 25 24 23 27 27 C 1.39005 * 120.27299 * 179.72316 * 17 15 14 28 28 N 1.31233 * 108.04418 * 359.97438 * 13 12 11 29 29 H 0.97001 * 119.99676 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47002 * 60.00679 * 9 7 2 31 31 H 1.08992 * 109.47255 * 300.00491 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06674 * 180.26559 * 12 11 10 34 34 H 0.96998 * 119.99756 * 179.97438 * 14 13 12 35 35 H 1.07996 * 119.23699 * 0.02562 * 18 17 15 36 36 H 1.08004 * 119.46763 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.56403 * 180.02562 * 24 23 21 38 38 H 1.07996 * 120.16631 * 180.02562 * 25 24 23 39 39 H 1.07996 * 121.02254 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2420 -4.6224 0.8942 12 6 3.2568 -5.4459 0.5464 13 6 3.8664 -4.9170 -0.6028 14 7 4.9584 -5.4703 -1.2837 15 6 5.5178 -6.6145 -0.8432 16 8 5.0750 -7.1664 0.1455 17 6 6.6698 -7.1978 -1.5610 18 6 7.1870 -6.5640 -2.7048 19 7 8.2054 -7.0588 -3.3594 20 6 8.8057 -8.1911 -2.9751 21 6 9.9003 -8.7069 -3.6941 22 9 10.3595 -8.0590 -4.7870 23 6 10.4955 -9.8628 -3.2836 24 6 10.0388 -10.5463 -2.1590 25 6 8.9829 -10.0784 -1.4382 26 6 8.3439 -8.8900 -1.8316 27 6 7.2548 -8.3746 -1.1082 28 7 3.2333 -3.8144 -0.9279 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 1.5774 -4.7526 1.7355 33 1 3.5467 -6.3502 1.0609 34 1 5.3114 -5.0302 -2.0727 35 1 6.7326 -5.6474 -3.0509 36 1 11.3348 -10.2546 -3.8391 37 1 10.5286 -11.4596 -1.8552 38 1 8.6385 -10.6172 -0.5680 39 1 6.8804 -8.8804 -0.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340485392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = 44.524812 kcal Electronic energy + Delta-G solvation = -26793.901755 eV Core-core repulsion = 22617.345414 eV Total energy + Delta-G solvation = -4176.556341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.94719 -42.42236 -41.88439 -40.47520 -38.05866 -36.37471 -35.32821 -34.46456 -33.02164 -31.85985 -30.96048 -30.86736 -28.65997 -26.44888 -25.34370 -24.84488 -23.21467 -23.18476 -22.02967 -21.28604 -19.61749 -19.18687 -18.76529 -18.60029 -17.96146 -17.78082 -16.99842 -16.93205 -16.59734 -16.57800 -16.20289 -15.78774 -15.65470 -15.54608 -14.99013 -14.96112 -14.53233 -14.35008 -14.24592 -14.18686 -13.81737 -13.68532 -13.18172 -12.95526 -12.81204 -12.74110 -12.49247 -12.31658 -12.11540 -11.71197 -11.58868 -11.43416 -11.28779 -10.73292 -10.70696 -10.11910 -9.78539 -9.29876 -9.13654 -8.33759 -6.47286 -1.03078 -0.64405 0.54636 0.99233 1.25236 1.36086 1.36820 1.39701 1.51839 1.82407 2.23481 2.28631 2.37713 2.80227 2.82649 2.98344 3.02757 3.34030 3.53803 3.60193 3.64664 3.74428 3.97228 4.11096 4.24074 4.29334 4.38506 4.59841 4.71928 4.75675 4.89016 4.92174 4.96163 5.02006 5.06342 5.11664 5.21565 5.27219 5.56635 5.68192 5.79183 5.87153 6.13990 6.27782 6.54237 6.64567 6.85304 7.02880 7.22701 8.74113 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.002028 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.176225 B =13802.183743 C =14846.477100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.058 3.942 12 C -0.291 4.291 13 C 0.264 3.736 14 N -0.619 5.619 15 C 0.579 3.421 16 O -0.532 6.532 17 C -0.192 4.192 18 C 0.163 3.837 19 N -0.496 5.496 20 C 0.090 3.910 21 C 0.079 3.921 22 F -0.139 7.139 23 C -0.107 4.107 24 C -0.087 4.087 25 C -0.083 4.083 26 C -0.102 4.102 27 C 0.031 3.969 28 N -0.344 5.344 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.203 0.797 33 H 0.173 0.827 34 H 0.422 0.578 35 H 0.180 0.820 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.307 -24.514 -2.452 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.091 4.091 12 C -0.322 4.322 13 C 0.010 3.990 14 N -0.268 5.268 15 C 0.366 3.634 16 O -0.408 6.408 17 C -0.198 4.198 18 C -0.011 4.011 19 N -0.203 5.203 20 C -0.032 4.032 21 C 0.059 3.941 22 F -0.118 7.118 23 C -0.127 4.127 24 C -0.105 4.105 25 C -0.102 4.102 26 C -0.104 4.104 27 C 0.005 3.995 28 N -0.175 5.175 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.190 0.810 34 H 0.261 0.739 35 H 0.197 0.803 36 H 0.188 0.812 37 H 0.200 0.800 38 H 0.193 0.807 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 20.113 -23.342 -3.399 30.999 hybrid contribution -0.165 0.844 0.305 0.913 sum 19.948 -22.498 -3.093 30.226 Atomic orbital electron populations 1.69995 1.07153 1.28684 1.50030 1.25729 0.95849 1.02696 0.93964 0.85309 0.78393 0.78479 0.78283 1.19977 1.19919 1.19501 1.21425 0.93371 0.90970 1.52654 0.92965 1.19366 0.85657 0.81465 0.98247 1.48860 1.23617 1.20368 1.19574 1.23210 1.00483 0.88717 0.96674 1.21742 1.02176 1.06610 1.01622 1.19346 0.91592 0.93384 0.94720 1.42366 1.29155 1.24678 1.30614 1.18145 0.82423 0.79108 0.83685 1.90705 1.62917 1.60918 1.26288 1.20603 0.99248 0.99955 0.99960 1.23311 0.90239 0.98328 0.89231 1.67932 1.09597 1.11661 1.31135 1.19333 0.96152 0.92824 0.94846 1.17532 0.95531 0.94441 0.86579 1.91492 1.87603 1.81325 1.51373 1.21461 1.00704 0.92196 0.98327 1.21258 0.95689 1.00887 0.92652 1.21581 0.94939 0.92824 1.00847 1.18815 0.97795 0.98238 0.95516 1.22241 0.89494 0.90999 0.96808 1.77271 1.04703 1.17932 1.17576 0.91850 0.95968 0.92157 0.77976 0.81027 0.73896 0.80304 0.81151 0.79964 0.80677 0.80268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.92 13.29 21.45 0.28 -51.63 16 2 C 0.02 0.99 5.46 84.66 0.46 1.45 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.67 9.23 25.60 0.24 -30.43 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 13.93 6.26 85.63 0.54 14.47 16 10 N -0.34 -15.81 3.67 -351.84 -1.29 -17.10 16 11 C 0.06 2.20 11.43 83.52 0.96 3.15 16 12 C -0.29 -10.87 9.60 22.11 0.21 -10.66 16 13 C 0.26 10.25 8.11 133.35 1.08 11.33 16 14 N -0.62 -18.31 5.40 -310.22 -1.67 -19.99 16 15 C 0.58 15.52 7.74 86.76 0.67 16.19 16 16 O -0.53 -16.54 13.51 -3.95 -0.05 -16.59 16 17 C -0.19 -4.02 5.89 -20.00 -0.12 -4.14 16 18 C 0.16 3.41 10.68 85.43 0.91 4.32 16 19 N -0.50 -11.97 10.17 -187.53 -1.91 -13.87 16 20 C 0.09 1.87 6.61 40.33 0.27 2.14 16 21 C 0.08 1.45 7.30 22.44 0.16 1.61 16 22 F -0.14 -3.14 17.11 44.97 0.77 -2.37 16 23 C -0.11 -1.00 9.91 22.08 0.22 -0.78 16 24 C -0.09 -0.43 9.95 22.04 0.22 -0.21 16 25 C -0.08 -0.62 9.77 22.34 0.22 -0.40 16 26 C -0.10 -1.56 5.74 -21.29 -0.12 -1.69 16 27 C 0.03 0.51 9.46 23.02 0.22 0.73 16 28 N -0.34 -15.77 12.42 -54.48 -0.68 -16.45 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 32 H 0.20 5.99 8.06 -2.91 -0.02 5.97 16 33 H 0.17 6.01 5.91 -2.91 -0.02 6.00 16 34 H 0.42 10.23 6.85 -92.71 -0.63 9.59 16 35 H 0.18 2.98 6.37 -2.91 -0.02 2.97 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.18 -0.54 8.06 -2.91 -0.02 -0.56 16 38 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 39 H 0.18 2.26 7.70 -2.91 -0.02 2.23 16 Total: -1.00 -75.38 350.98 4.11 -71.27 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.50 Total: 13.96 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.13 Total: 7.09 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -5.26 Total: -119.05 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.77 Total: -2.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.38 4.11 -71.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340485392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.790 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds