Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47456 * 2 1 4 4 O 1.42905 * 109.47133 * 239.99748 * 2 1 3 5 5 C 1.35675 * 117.00306 * 275.13414 * 4 2 1 6 6 C 1.38694 * 120.13450 * 5.42028 * 5 4 2 7 7 C 1.38056 * 120.09526 * 179.72233 * 6 5 4 8 8 C 1.38644 * 120.37960 * 0.55522 * 7 6 5 9 9 Cl 1.73594 * 119.86357 * 179.74047 * 8 7 6 10 10 C 1.37888 * 120.27123 * 359.72321 * 8 7 6 11 11 C 1.39721 * 119.89498 * 359.97438 * 10 8 7 12 12 C 1.47539 * 120.18405 * 179.97438 * 11 10 8 13 13 O 1.21590 * 119.99779 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99981 * 0.02562 * 12 11 10 15 15 C 1.46505 * 119.99815 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47093 * 180.02562 * 15 14 12 17 17 O 1.21290 * 119.99993 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99994 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99944 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00339 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99787 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00391 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47312 * 90.00005 * 23 21 19 25 25 H 1.48505 * 109.47060 * 210.00247 * 23 21 19 26 26 H 1.48508 * 109.47139 * 329.99848 * 23 21 19 27 27 H 1.08994 * 109.47126 * 300.00172 * 1 2 3 28 28 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 59.99791 * 1 2 3 30 30 H 1.09001 * 109.47026 * 120.00209 * 2 1 3 31 31 H 1.09004 * 109.47098 * 59.99807 * 3 2 1 32 32 H 1.08992 * 109.47406 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47174 * 300.00119 * 3 2 1 34 34 H 1.08001 * 119.95366 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.80966 * 180.25700 * 7 6 5 36 36 H 1.08004 * 120.05453 * 180.02562 * 10 8 7 37 37 H 0.96996 * 120.00152 * 0.02562 * 14 12 11 38 38 H 1.08998 * 109.47035 * 300.00073 * 15 14 12 39 39 H 1.09000 * 109.46710 * 60.00099 * 15 14 12 40 40 H 0.96996 * 119.99767 * 0.02562 * 18 16 15 41 41 H 0.96993 * 120.00106 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1097 -2.0248 -1.0989 6 6 1.6559 -2.7024 0.0229 7 6 1.7563 -4.0777 0.0887 8 6 2.3203 -4.7905 -0.9582 9 17 2.4459 -6.5190 -0.8585 10 6 2.7816 -4.1320 -2.0784 11 6 2.6801 -2.7408 -2.1597 12 6 3.1721 -2.0297 -3.3551 13 8 3.0824 -0.8190 -3.4221 14 7 3.7210 -2.7222 -4.3728 15 6 4.2101 -2.0159 -5.5596 16 6 4.7715 -3.0121 -6.5411 17 8 4.7634 -4.1956 -6.2757 18 7 5.2816 -2.5881 -7.7143 19 6 5.7928 -3.4943 -8.6070 20 1 5.7864 -4.5481 -8.3704 21 6 6.3193 -3.0571 -9.8163 22 7 6.3276 -1.7749 -10.1041 23 14 7.0152 -4.2919 -11.0330 24 1 5.9382 -4.7444 -11.9498 25 1 8.1000 -3.6532 -11.8208 26 1 7.5607 -5.4599 -10.2956 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.2197 -2.1537 0.8446 35 1 1.3976 -4.6010 0.9628 36 1 3.2201 -4.6907 -2.8921 37 1 3.7922 -3.6880 -4.3195 38 1 3.3870 -1.4729 -6.0241 39 1 4.9905 -1.3131 -5.2681 40 1 5.2877 -1.6417 -7.9267 41 1 6.6947 -1.4698 -10.9485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343534024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -95.666481 kcal Electronic energy + Delta-G solvation = -26411.384029 eV Core-core repulsion = 22317.483242 eV Total energy + Delta-G solvation = -4093.900788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90520 -39.26717 -38.22252 -37.84292 -36.38602 -34.46874 -33.73251 -33.42658 -31.72257 -31.31589 -29.87932 -27.66855 -27.57885 -24.80333 -24.07048 -23.12737 -21.24257 -20.36814 -19.66807 -18.79074 -18.05896 -17.51376 -16.63026 -15.91013 -15.85450 -15.42739 -15.27892 -15.12513 -15.02152 -14.42504 -14.33889 -14.05352 -13.89414 -13.58636 -13.32573 -13.25047 -12.88487 -12.67895 -12.60612 -12.42675 -12.15236 -11.93993 -11.78875 -11.62238 -11.59039 -11.22599 -11.11646 -11.05577 -10.77520 -10.44980 -10.30864 -9.70640 -9.62716 -9.45659 -8.77819 -8.62446 -8.36855 -8.09202 -6.50527 -3.92435 0.54539 0.91345 1.92497 2.77442 2.87306 3.12647 3.22417 3.26079 3.33857 3.62930 3.76144 4.11960 4.31945 4.35817 4.46138 4.57136 4.72586 4.73986 4.87246 4.92319 5.10048 5.18143 5.20831 5.32848 5.36552 5.40078 5.48571 5.56721 5.74667 5.80468 5.84985 5.90338 5.96751 5.98155 6.08039 6.17518 6.67894 7.12883 7.47105 7.81323 7.93035 8.43974 8.48328 9.05564 9.40251 9.88100 10.66400 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002612 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.113540 B =10717.071398 C =12836.886064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 C -0.147 4.147 4 O -0.267 6.267 5 C 0.194 3.806 6 C -0.214 4.214 7 C -0.045 4.045 8 C -0.084 4.084 9 Cl -0.065 7.065 10 C -0.035 4.035 11 C -0.155 4.155 12 C 0.558 3.442 13 O -0.523 6.523 14 N -0.705 5.705 15 C 0.111 3.889 16 C 0.428 3.572 17 O -0.597 6.597 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.408 0.592 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.396 0.604 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 1.606 23.118 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.178 6.178 5 C 0.145 3.855 6 C -0.233 4.233 7 C -0.064 4.064 8 C -0.111 4.111 9 Cl -0.037 7.037 10 C -0.054 4.054 11 C -0.159 4.159 12 C 0.344 3.656 13 O -0.400 6.400 14 N -0.361 5.361 15 C -0.017 4.017 16 C 0.214 3.786 17 O -0.484 6.484 18 N -0.183 5.183 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.230 0.770 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.815 1.807 22.865 25.358 hybrid contribution 0.306 -0.704 -0.591 0.969 sum -10.509 1.103 22.274 24.654 Atomic orbital electron populations 1.22407 0.94867 1.03104 1.03481 1.22599 0.94520 0.94344 0.87279 1.21821 1.02416 0.93106 1.03077 1.86479 1.78882 1.14814 1.37658 1.19036 0.90555 0.83680 0.92188 1.21217 1.08107 0.94670 0.99265 1.20973 0.95030 0.93196 0.97209 1.20595 1.07565 0.85436 0.97468 1.98380 1.97075 1.09888 1.98307 1.21217 0.95052 0.92349 0.96823 1.19326 1.07951 0.92423 0.96232 1.17758 0.78499 0.87050 0.82290 1.90819 1.56003 1.12976 1.80187 1.45610 1.61226 1.11944 1.17270 1.20956 0.99984 0.94738 0.85991 1.19737 0.85466 0.89163 0.84250 1.90493 1.62898 1.17309 1.77691 1.41788 1.51662 1.10460 1.14433 1.19732 1.35745 0.91654 0.96263 0.87656 1.25324 0.97377 0.96792 0.98223 1.69611 1.45400 1.13540 1.24944 0.85817 0.78514 0.79932 0.79795 1.20266 1.20806 1.19303 0.90903 0.91872 0.91031 0.90890 0.90633 0.91442 0.91045 0.83788 0.84317 0.83407 0.75272 0.89691 0.89687 0.77017 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.17 37.16 0.34 -0.94 16 2 C 0.07 0.59 2.85 -26.73 -0.08 0.52 16 3 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 4 O -0.27 -3.50 7.87 -40.62 -0.32 -3.82 16 5 C 0.19 2.42 6.61 -38.71 -0.26 2.17 16 6 C -0.21 -1.96 8.23 -39.48 -0.32 -2.28 16 7 C -0.05 -0.40 9.81 -39.50 -0.39 -0.79 16 8 C -0.08 -0.90 6.31 -39.56 -0.25 -1.15 16 9 Cl -0.07 -0.68 28.94 -51.86 -1.50 -2.18 16 10 C -0.04 -0.43 9.31 -39.16 -0.36 -0.80 16 11 C -0.16 -2.18 5.89 -104.85 -0.62 -2.80 16 12 C 0.56 9.51 7.76 -12.47 -0.10 9.41 16 13 O -0.52 -10.24 15.16 -16.60 -0.25 -10.49 16 14 N -0.71 -12.25 5.48 -62.53 -0.34 -12.60 16 15 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 16 C 0.43 9.88 7.85 -10.99 -0.09 9.79 16 17 O -0.60 -15.29 15.24 5.55 0.08 -15.21 16 18 N -0.55 -13.66 5.29 -10.96 -0.06 -13.71 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 20 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 23 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.44 6.90 -51.93 -0.36 0.08 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 0.93 5.42 -52.49 -0.28 0.64 16 35 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.15 1.78 6.40 -52.48 -0.34 1.45 16 37 H 0.41 6.90 5.47 -40.82 -0.22 6.68 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -32.09 365.52 -7.96 -40.05 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -4.75 Total: 13.57 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.04 Total: 6.53 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.32 Total: -49.55 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.49 Total: -29.52 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.09 -7.96 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343534024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.619 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds