Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47456 * 2 1 4 4 O 1.42905 * 109.47133 * 239.99748 * 2 1 3 5 5 C 1.35675 * 117.00306 * 275.13414 * 4 2 1 6 6 C 1.38694 * 120.13450 * 5.42028 * 5 4 2 7 7 C 1.38056 * 120.09526 * 179.72233 * 6 5 4 8 8 C 1.38644 * 120.37960 * 0.55522 * 7 6 5 9 9 Cl 1.73594 * 119.86357 * 179.74047 * 8 7 6 10 10 C 1.37888 * 120.27123 * 359.72321 * 8 7 6 11 11 C 1.39721 * 119.89498 * 359.97438 * 10 8 7 12 12 C 1.47539 * 120.18405 * 179.97438 * 11 10 8 13 13 O 1.21590 * 119.99779 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99981 * 0.02562 * 12 11 10 15 15 C 1.46505 * 119.99815 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47093 * 180.02562 * 15 14 12 17 17 O 1.21290 * 119.99993 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99994 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99944 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00339 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99787 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00391 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47312 * 90.00005 * 23 21 19 25 25 H 1.48505 * 109.47060 * 210.00247 * 23 21 19 26 26 H 1.48508 * 109.47139 * 329.99848 * 23 21 19 27 27 H 1.08994 * 109.47126 * 300.00172 * 1 2 3 28 28 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 59.99791 * 1 2 3 30 30 H 1.09001 * 109.47026 * 120.00209 * 2 1 3 31 31 H 1.09004 * 109.47098 * 59.99807 * 3 2 1 32 32 H 1.08992 * 109.47406 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47174 * 300.00119 * 3 2 1 34 34 H 1.08001 * 119.95366 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.80966 * 180.25700 * 7 6 5 36 36 H 1.08004 * 120.05453 * 180.02562 * 10 8 7 37 37 H 0.96996 * 120.00152 * 0.02562 * 14 12 11 38 38 H 1.08998 * 109.47035 * 300.00073 * 15 14 12 39 39 H 1.09000 * 109.46710 * 60.00099 * 15 14 12 40 40 H 0.96996 * 119.99767 * 0.02562 * 18 16 15 41 41 H 0.96993 * 120.00106 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1097 -2.0248 -1.0989 6 6 1.6559 -2.7024 0.0229 7 6 1.7563 -4.0777 0.0887 8 6 2.3203 -4.7905 -0.9582 9 17 2.4459 -6.5190 -0.8585 10 6 2.7816 -4.1320 -2.0784 11 6 2.6801 -2.7408 -2.1597 12 6 3.1721 -2.0297 -3.3551 13 8 3.0824 -0.8190 -3.4221 14 7 3.7210 -2.7222 -4.3728 15 6 4.2101 -2.0159 -5.5596 16 6 4.7715 -3.0121 -6.5411 17 8 4.7634 -4.1956 -6.2757 18 7 5.2816 -2.5881 -7.7143 19 6 5.7928 -3.4943 -8.6070 20 1 5.7864 -4.5481 -8.3704 21 6 6.3193 -3.0571 -9.8163 22 7 6.3276 -1.7749 -10.1041 23 14 7.0152 -4.2919 -11.0330 24 1 5.9382 -4.7444 -11.9498 25 1 8.1000 -3.6532 -11.8208 26 1 7.5607 -5.4599 -10.2956 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.2197 -2.1537 0.8446 35 1 1.3976 -4.6010 0.9628 36 1 3.2201 -4.6907 -2.8921 37 1 3.7922 -3.6880 -4.3195 38 1 3.3870 -1.4729 -6.0241 39 1 4.9905 -1.3131 -5.2681 40 1 5.2877 -1.6417 -7.9267 41 1 6.6947 -1.4698 -10.9485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343534024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -116.200881 kcal Electronic energy + Delta-G solvation = -26412.274468 eV Core-core repulsion = 22317.483242 eV Total energy + Delta-G solvation = -4094.791226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86131 -40.67650 -39.74322 -38.88289 -37.22161 -36.27022 -35.35798 -34.15362 -33.40906 -32.60075 -30.74085 -29.24524 -28.15622 -26.59412 -25.05220 -24.09676 -22.04594 -21.56980 -21.36268 -20.20001 -19.68473 -18.63266 -17.66794 -17.38684 -16.87740 -16.81005 -16.48784 -16.42764 -16.18549 -15.99924 -15.62109 -15.40484 -15.05797 -14.77709 -14.50137 -14.12325 -13.94797 -13.60225 -13.56377 -13.53138 -13.36522 -13.33753 -12.98736 -12.91335 -12.51224 -12.46435 -12.33220 -12.13073 -12.02856 -11.77519 -11.58025 -11.49901 -11.01441 -10.57967 -10.39177 -10.17653 -10.08776 -9.23844 -8.51791 -6.02064 -0.36255 0.06860 1.09549 1.35735 1.42281 1.54978 1.70091 1.89347 1.94880 2.12068 2.30707 2.59526 3.08940 3.15305 3.47860 3.58148 3.76033 3.89908 3.99826 4.04427 4.13224 4.19017 4.26490 4.39729 4.40583 4.54993 4.59629 4.71610 4.81237 4.85541 4.90114 4.99395 5.03332 5.21391 5.26565 5.29428 5.37721 5.38003 5.90672 6.33201 6.44718 6.49763 7.02287 7.11062 7.42637 7.92797 8.65214 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002612 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.113540 B =10717.071398 C =12836.886064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 C -0.147 4.147 4 O -0.299 6.299 5 C 0.187 3.813 6 C -0.200 4.200 7 C -0.027 4.027 8 C -0.090 4.090 9 Cl -0.062 7.062 10 C -0.040 4.040 11 C -0.185 4.185 12 C 0.558 3.442 13 O -0.555 6.555 14 N -0.707 5.707 15 C 0.123 3.877 16 C 0.433 3.567 17 O -0.623 6.623 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.141 0.859 37 H 0.410 0.590 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.399 0.601 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 1.196 25.326 27.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 C -0.204 4.204 4 O -0.211 6.211 5 C 0.138 3.862 6 C -0.218 4.218 7 C -0.046 4.046 8 C -0.117 4.117 9 Cl -0.033 7.033 10 C -0.059 4.059 11 C -0.189 4.189 12 C 0.347 3.653 13 O -0.434 6.434 14 N -0.363 5.363 15 C -0.005 4.005 16 C 0.220 3.780 17 O -0.511 6.511 18 N -0.193 5.193 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.192 0.808 36 H 0.158 0.842 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.233 0.767 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.768 1.407 25.089 27.747 hybrid contribution 0.545 -0.556 -1.157 1.394 sum -11.222 0.850 23.932 26.446 Atomic orbital electron populations 1.22391 0.93567 1.03469 1.03970 1.22964 0.95596 0.94350 0.86808 1.21870 1.01647 0.93143 1.03735 1.86454 1.79233 1.15311 1.40141 1.19251 0.90493 0.83837 0.92657 1.21535 1.06739 0.94813 0.98741 1.21390 0.92813 0.93071 0.97311 1.20704 1.07733 0.85697 0.97535 1.98383 1.97087 1.09607 1.98265 1.21138 0.95521 0.91764 0.97505 1.19139 1.10703 0.93104 0.95955 1.18236 0.77526 0.86806 0.82726 1.90787 1.57400 1.14318 1.80937 1.45626 1.61573 1.11984 1.17073 1.20780 1.00409 0.93617 0.85650 1.20366 0.84060 0.89470 0.84114 1.90468 1.63563 1.18854 1.78238 1.41831 1.52287 1.10336 1.14890 1.19745 1.37816 0.91337 0.97735 0.89544 1.26138 0.97022 0.98658 0.99293 1.69678 1.45525 1.14802 1.25605 0.84868 0.78088 0.77593 0.77439 1.19518 1.19587 1.19434 0.88099 0.91532 0.92854 0.88483 0.87491 0.92685 0.92830 0.80421 0.80763 0.84156 0.75058 0.88729 0.88685 0.76687 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.17 71.98 0.66 -1.41 16 2 C 0.06 0.89 2.85 30.59 0.09 0.98 16 3 C -0.15 -2.14 9.56 71.98 0.69 -1.46 16 4 O -0.30 -7.71 7.87 -69.00 -0.54 -8.26 16 5 C 0.19 4.46 6.61 22.84 0.15 4.61 16 6 C -0.20 -3.02 8.23 22.34 0.18 -2.84 16 7 C -0.03 -0.39 9.81 22.32 0.22 -0.17 16 8 C -0.09 -1.77 6.31 22.28 0.14 -1.63 16 9 Cl -0.06 -1.19 28.94 -2.72 -0.08 -1.27 16 10 C -0.04 -0.97 9.31 22.55 0.21 -0.76 16 11 C -0.18 -5.23 5.89 -20.01 -0.12 -5.35 16 12 C 0.56 19.63 7.76 86.70 0.67 20.31 16 13 O -0.55 -22.48 15.16 16.93 0.26 -22.23 16 14 N -0.71 -25.38 5.48 -470.00 -2.57 -27.95 16 15 C 0.12 4.74 6.15 85.63 0.53 5.27 16 16 C 0.43 20.53 7.85 87.66 0.69 21.22 16 17 O -0.62 -32.86 15.24 -3.06 -0.05 -32.90 16 18 N -0.56 -28.55 5.29 -306.99 -1.62 -30.17 16 19 C -0.34 -18.80 9.68 84.04 0.81 -17.98 16 20 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 23 Si 1.00 42.17 29.55 68.60 2.03 44.19 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.73 6.90 -2.39 -0.02 0.72 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.99 6.32 -2.39 -0.02 0.97 16 31 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.18 1.44 5.42 -2.91 -0.02 1.42 16 35 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.14 3.52 6.40 -2.91 -0.02 3.50 16 37 H 0.41 14.43 5.47 -92.71 -0.51 13.93 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 41 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.99 365.52 2.96 -68.03 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.13 Total: 38.73 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.39 Total: 20.69 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -3.91 Total: -107.00 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -0.33 Total: -63.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -70.99 2.96 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343534024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.169 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds