Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47147 * 2 1 4 4 C 1.35932 * 116.99964 * 180.02562 * 3 2 1 5 5 C 1.38862 * 120.05721 * 269.97740 * 4 3 2 6 6 Cl 1.73596 * 120.04014 * 0.04332 * 5 4 3 7 7 C 1.38208 * 119.92232 * 180.02562 * 5 4 3 8 8 C 1.38291 * 120.04124 * 0.02562 * 7 5 4 9 9 C 1.38234 * 120.12201 * 359.68955 * 8 7 5 10 10 C 1.38196 * 120.07152 * 0.58910 * 9 8 7 11 11 C 1.50700 * 120.01808 * 179.70563 * 10 9 8 12 12 C 1.50702 * 109.46869 * 264.72379 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72354 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 O 1.21297 * 119.99707 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00262 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99935 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99843 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47145 * 89.99765 * 23 21 19 25 25 H 1.48496 * 109.46738 * 209.99758 * 23 21 19 26 26 H 1.48503 * 109.46936 * 329.99329 * 23 21 19 27 27 H 1.08997 * 109.47288 * 59.99821 * 1 2 3 28 28 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47287 * 300.00073 * 1 2 3 30 30 H 1.09000 * 109.47287 * 239.99927 * 2 1 3 31 31 H 1.08999 * 109.47346 * 119.99634 * 2 1 3 32 32 H 1.07997 * 119.98410 * 180.02562 * 7 5 4 33 33 H 1.08002 * 119.94002 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.96439 * 180.32084 * 9 8 7 35 35 H 1.09004 * 109.47210 * 144.72673 * 11 10 9 36 36 H 1.08994 * 109.47551 * 24.72325 * 11 10 9 37 37 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 38 38 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 39 39 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 40 40 H 0.96996 * 120.00282 * 0.02562 * 18 16 15 41 41 H 0.97000 * 120.00127 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3539 1.5253 -0.0005 5 6 4.0438 1.6168 1.2011 6 17 3.1866 1.5026 2.7063 7 6 5.4139 1.7984 1.1973 8 6 6.0969 1.8895 -0.0018 9 6 5.4126 1.7928 -1.1990 10 6 4.0419 1.6170 -1.2009 11 6 3.2963 1.5184 -2.5068 12 6 2.7554 2.8746 -2.8800 13 8 2.9561 3.8275 -2.1570 14 7 2.0539 3.0299 -4.0203 15 6 1.5333 4.3495 -4.3861 16 6 0.7918 4.2520 -5.6944 17 8 0.7062 3.1850 -6.2649 18 7 0.2238 5.3503 -6.2305 19 6 -0.4512 5.2615 -7.4205 20 1 -0.5282 4.3113 -7.9281 21 6 -1.0374 6.3938 -7.9730 22 7 -1.6839 6.3087 -9.1139 23 14 -0.9049 8.0371 -7.0948 24 1 0.3150 8.7475 -7.5553 25 1 -2.1024 8.8600 -7.4013 26 1 -0.8223 7.8100 -5.6295 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9516 1.8692 2.1312 33 1 7.1675 2.0318 -0.0028 34 1 5.9493 1.8591 -2.1339 35 1 2.4707 0.8144 -2.4016 36 1 3.9736 1.1702 -3.2866 37 1 1.8936 2.2679 -4.5987 38 1 0.8541 4.7003 -3.6091 39 1 2.3612 5.0510 -4.4886 40 1 0.2925 6.2036 -5.7745 41 1 -2.0934 7.0990 -9.4995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344152457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -92.484692 kcal Electronic energy + Delta-G solvation = -26490.208174 eV Core-core repulsion = 22396.445360 eV Total energy + Delta-G solvation = -4093.762815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68757 -39.39184 -38.25402 -37.71894 -36.68850 -34.52478 -33.73661 -33.02400 -32.03669 -31.81031 -29.87018 -28.78033 -26.92432 -24.31626 -23.55682 -22.66267 -22.13088 -20.24104 -19.63596 -18.68852 -18.20631 -17.16550 -17.01258 -16.58111 -15.66858 -15.54234 -15.41430 -15.20333 -14.91068 -14.82999 -14.67561 -14.13499 -13.81257 -13.53966 -13.28119 -13.07043 -12.88335 -12.60897 -12.50276 -12.48919 -12.19366 -12.15298 -11.89308 -11.73076 -11.64282 -11.50254 -11.24128 -11.11911 -10.64999 -10.12170 -10.07634 -9.84436 -9.70962 -9.01313 -8.88258 -8.84542 -8.78018 -8.31707 -6.42020 -3.94585 0.78075 0.83960 1.87505 2.77521 2.98928 2.99461 3.03879 3.11908 3.30337 3.55050 3.56850 4.02737 4.26727 4.52561 4.54560 4.70652 4.85842 4.87361 4.92900 4.94780 5.00392 5.04664 5.12655 5.14703 5.26838 5.45228 5.57255 5.63320 5.68646 5.78591 5.80594 5.82211 5.90548 5.97067 6.10544 6.31728 6.56791 7.21488 7.42866 7.72995 7.99099 8.36768 8.45595 8.80351 9.28648 9.62090 10.70103 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002326 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.671109 B =12034.040353 C =12364.771526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.321 6.321 4 C 0.125 3.875 5 C -0.056 4.056 6 Cl -0.061 7.061 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.090 4.090 10 C -0.069 4.069 11 C -0.099 4.099 12 C 0.518 3.482 13 O -0.537 6.537 14 N -0.709 5.709 15 C 0.107 3.893 16 C 0.438 3.562 17 O -0.580 6.580 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.374 0.626 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -12.034 21.112 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.238 6.238 4 C 0.080 3.920 5 C -0.083 4.083 6 Cl -0.032 7.032 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.108 4.108 10 C -0.071 4.071 11 C -0.138 4.138 12 C 0.304 3.696 13 O -0.414 6.414 14 N -0.364 5.364 15 C -0.020 4.020 16 C 0.224 3.776 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.208 0.792 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.077 -11.818 21.175 27.551 hybrid contribution -0.104 0.994 0.392 1.073 sum 12.973 -10.824 21.567 27.397 Atomic orbital electron populations 1.21761 0.92712 1.02625 1.03804 1.22771 0.96033 0.81922 1.00674 1.86146 1.16566 1.27006 1.94129 1.18141 0.83618 0.99922 0.90286 1.21321 0.92949 1.07216 0.86838 1.98364 1.77524 1.96522 1.30832 1.20976 0.91524 1.00057 0.99469 1.21083 1.00403 1.00188 0.91427 1.21062 0.92897 0.97911 0.98930 1.19570 0.93644 1.00721 0.93125 1.20548 1.01324 0.96698 0.95263 1.20216 0.78383 0.90335 0.80713 1.90717 1.58171 1.41539 1.50959 1.45655 1.54949 1.12081 1.23669 1.20956 0.98909 0.85686 0.96496 1.19643 0.85162 0.85265 0.87501 1.90534 1.64234 1.28059 1.63583 1.42130 1.48663 1.08676 1.21911 1.19439 1.29162 0.99113 0.96151 0.86077 1.25068 0.96474 0.98309 0.96040 1.69617 1.33856 1.30524 1.17305 0.86674 0.79102 0.83953 0.79804 1.19382 1.19963 1.19206 0.91271 0.90556 0.91540 0.92771 0.92753 0.84633 0.84694 0.84831 0.87766 0.87432 0.75069 0.89763 0.89792 0.79234 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.56 6.45 37.16 0.24 0.80 16 3 O -0.32 -4.08 8.79 -19.53 -0.17 -4.25 16 4 C 0.13 1.54 5.69 -39.20 -0.22 1.31 16 5 C -0.06 -0.63 6.33 -39.36 -0.25 -0.88 16 6 Cl -0.06 -0.66 28.51 -51.86 -1.48 -2.14 16 7 C -0.10 -0.93 9.83 -39.57 -0.39 -1.32 16 8 C -0.11 -0.93 10.04 -39.56 -0.40 -1.33 16 9 C -0.09 -0.84 9.68 -39.60 -0.38 -1.23 16 10 C -0.07 -0.78 4.39 -104.48 -0.46 -1.24 16 11 C -0.10 -1.05 5.55 -29.03 -0.16 -1.21 16 12 C 0.52 7.69 7.82 -10.98 -0.09 7.61 16 13 O -0.54 -9.85 16.03 5.55 0.09 -9.76 16 14 N -0.71 -11.00 5.53 -61.47 -0.34 -11.34 16 15 C 0.11 1.86 6.15 -5.20 -0.03 1.83 16 16 C 0.44 9.56 7.85 -10.99 -0.09 9.47 16 17 O -0.58 -14.42 15.24 5.54 0.08 -14.33 16 18 N -0.58 -13.37 5.09 -10.96 -0.06 -13.43 16 19 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.05 1.21 5.50 -17.46 -0.10 1.12 16 22 N -0.87 -24.88 13.96 55.50 0.77 -24.11 16 23 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.10 0.99 6.43 -51.93 -0.33 0.65 16 36 H 0.11 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.41 6.15 7.44 -40.82 -0.30 5.84 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 41 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -34.03 370.91 -7.34 -41.37 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.72 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.09 Total: 5.37 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.38 Total: -48.87 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: 0.00 Total: -28.35 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.03 -7.34 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344152457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.116 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds