Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47147 * 2 1 4 4 C 1.35932 * 116.99964 * 180.02562 * 3 2 1 5 5 C 1.38862 * 120.05721 * 269.97740 * 4 3 2 6 6 Cl 1.73596 * 120.04014 * 0.04332 * 5 4 3 7 7 C 1.38208 * 119.92232 * 180.02562 * 5 4 3 8 8 C 1.38291 * 120.04124 * 0.02562 * 7 5 4 9 9 C 1.38234 * 120.12201 * 359.68955 * 8 7 5 10 10 C 1.38196 * 120.07152 * 0.58910 * 9 8 7 11 11 C 1.50700 * 120.01808 * 179.70563 * 10 9 8 12 12 C 1.50702 * 109.46869 * 264.72379 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72354 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 O 1.21297 * 119.99707 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00262 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99935 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99843 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47145 * 89.99765 * 23 21 19 25 25 H 1.48496 * 109.46738 * 209.99758 * 23 21 19 26 26 H 1.48503 * 109.46936 * 329.99329 * 23 21 19 27 27 H 1.08997 * 109.47288 * 59.99821 * 1 2 3 28 28 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47287 * 300.00073 * 1 2 3 30 30 H 1.09000 * 109.47287 * 239.99927 * 2 1 3 31 31 H 1.08999 * 109.47346 * 119.99634 * 2 1 3 32 32 H 1.07997 * 119.98410 * 180.02562 * 7 5 4 33 33 H 1.08002 * 119.94002 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.96439 * 180.32084 * 9 8 7 35 35 H 1.09004 * 109.47210 * 144.72673 * 11 10 9 36 36 H 1.08994 * 109.47551 * 24.72325 * 11 10 9 37 37 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 38 38 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 39 39 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 40 40 H 0.96996 * 120.00282 * 0.02562 * 18 16 15 41 41 H 0.97000 * 120.00127 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3539 1.5253 -0.0005 5 6 4.0438 1.6168 1.2011 6 17 3.1866 1.5026 2.7063 7 6 5.4139 1.7984 1.1973 8 6 6.0969 1.8895 -0.0018 9 6 5.4126 1.7928 -1.1990 10 6 4.0419 1.6170 -1.2009 11 6 3.2963 1.5184 -2.5068 12 6 2.7554 2.8746 -2.8800 13 8 2.9561 3.8275 -2.1570 14 7 2.0539 3.0299 -4.0203 15 6 1.5333 4.3495 -4.3861 16 6 0.7918 4.2520 -5.6944 17 8 0.7062 3.1850 -6.2649 18 7 0.2238 5.3503 -6.2305 19 6 -0.4512 5.2615 -7.4205 20 1 -0.5282 4.3113 -7.9281 21 6 -1.0374 6.3938 -7.9730 22 7 -1.6839 6.3087 -9.1139 23 14 -0.9049 8.0371 -7.0948 24 1 0.3150 8.7475 -7.5553 25 1 -2.1024 8.8600 -7.4013 26 1 -0.8223 7.8100 -5.6295 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.9516 1.8692 2.1312 33 1 7.1675 2.0318 -0.0028 34 1 5.9493 1.8591 -2.1339 35 1 2.4707 0.8144 -2.4016 36 1 3.9736 1.1702 -3.2866 37 1 1.8936 2.2679 -4.5987 38 1 0.8541 4.7003 -3.6091 39 1 2.3612 5.0510 -4.4886 40 1 0.2925 6.2036 -5.7745 41 1 -2.0934 7.0990 -9.4995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344152457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -116.639413 kcal Electronic energy + Delta-G solvation = -26491.255602 eV Core-core repulsion = 22396.445360 eV Total energy + Delta-G solvation = -4094.810242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55975 -40.73521 -39.81960 -38.47114 -37.46899 -36.28768 -35.28257 -33.89380 -33.77844 -32.73735 -30.63431 -29.96578 -28.14015 -26.08932 -24.26652 -23.42202 -22.94630 -21.47358 -21.38132 -20.51190 -19.03299 -18.47482 -17.79559 -17.53197 -17.22344 -16.77754 -16.73831 -16.43660 -16.14761 -15.73108 -15.47043 -15.45486 -15.23825 -14.77287 -14.37017 -14.28667 -14.01974 -13.94992 -13.83448 -13.50087 -13.23568 -13.13916 -12.95919 -12.72782 -12.52429 -12.45489 -12.34606 -12.24374 -12.01431 -11.86234 -11.58677 -11.07259 -10.85107 -10.66062 -10.33839 -10.15514 -9.75716 -9.58039 -8.46152 -6.07857 0.06088 0.11094 1.11305 1.30522 1.33035 1.42837 1.63252 1.79570 2.02574 2.19641 2.40194 2.74009 2.91311 3.10178 3.49857 3.86748 3.88117 4.01918 4.07996 4.18952 4.21099 4.26720 4.29552 4.36395 4.39609 4.41936 4.45249 4.58971 4.77780 4.91503 4.94491 5.13578 5.22334 5.27173 5.29336 5.40129 5.48296 5.68265 5.87847 6.44674 6.47671 6.53803 6.77781 7.19139 7.30159 7.77247 8.70218 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002326 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.671109 B =12034.040353 C =12364.771526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.345 6.345 4 C 0.104 3.896 5 C -0.077 4.077 6 Cl -0.067 7.067 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.092 4.092 10 C -0.089 4.089 11 C -0.092 4.092 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.711 5.711 15 C 0.119 3.881 16 C 0.446 3.554 17 O -0.612 6.612 18 N -0.579 5.579 19 C -0.330 4.330 20 H 0.065 0.935 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.957 3.043 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.235 1.235 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.415 0.585 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.391 0.609 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.443 -11.332 22.969 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.263 6.263 4 C 0.060 3.940 5 C -0.104 4.104 6 Cl -0.039 7.039 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.110 4.110 10 C -0.090 4.090 11 C -0.131 4.131 12 C 0.308 3.692 13 O -0.451 6.451 14 N -0.365 5.365 15 C -0.009 4.009 16 C 0.234 3.766 17 O -0.498 6.498 18 N -0.219 5.219 19 C -0.459 4.459 20 H 0.083 0.917 21 C -0.207 4.207 22 N -0.565 5.565 23 Si 0.777 3.223 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.159 1.159 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.253 0.747 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.227 0.773 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.152 -11.147 23.050 29.752 hybrid contribution -0.701 0.629 -0.189 0.960 sum 14.451 -10.518 22.861 29.019 Atomic orbital electron populations 1.21779 0.92368 1.03786 1.02713 1.22930 0.96298 0.81048 1.01508 1.86105 1.17227 1.28626 1.94335 1.18419 0.83579 1.00889 0.91137 1.21550 0.93860 1.08448 0.86502 1.98353 1.77845 1.96629 1.31034 1.21316 0.90835 0.98977 1.00908 1.21487 1.01947 0.98642 0.90591 1.21424 0.92349 0.96848 1.00419 1.19729 0.94570 1.01933 0.92802 1.20582 1.02234 0.94106 0.96154 1.20887 0.77272 0.91529 0.79527 1.90699 1.59450 1.43152 1.51816 1.45714 1.55184 1.11403 1.24226 1.20831 0.99177 0.87336 0.93568 1.20485 0.83622 0.84215 0.88293 1.90523 1.64938 1.29429 1.64933 1.41952 1.48986 1.09960 1.21012 1.19033 1.31309 0.97563 0.98031 0.91699 1.26043 0.95222 1.02838 0.96631 1.69775 1.35059 1.32279 1.19374 0.85464 0.79418 0.77320 0.80053 1.18001 1.19827 1.15871 0.92556 0.88293 0.92330 0.91464 0.92322 0.82657 0.81479 0.82650 0.86791 0.84274 0.74727 0.88601 0.87873 0.77317 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.06 1.00 6.45 71.98 0.46 1.46 16 3 O -0.35 -8.62 8.79 -92.78 -0.82 -9.44 16 4 C 0.10 2.46 5.69 22.52 0.13 2.59 16 5 C -0.08 -1.64 6.33 22.41 0.14 -1.50 16 6 Cl -0.07 -1.41 28.51 -2.72 -0.08 -1.49 16 7 C -0.10 -1.64 9.83 22.28 0.22 -1.42 16 8 C -0.11 -1.46 10.04 22.28 0.22 -1.24 16 9 C -0.09 -1.47 9.68 22.26 0.22 -1.26 16 10 C -0.09 -1.85 4.39 -19.77 -0.09 -1.93 16 11 C -0.09 -1.76 5.55 29.10 0.16 -1.60 16 12 C 0.52 14.53 7.82 87.66 0.69 15.21 16 13 O -0.57 -20.11 16.03 -3.04 -0.05 -20.16 16 14 N -0.71 -20.93 5.53 -466.79 -2.58 -23.51 16 15 C 0.12 3.90 6.15 85.63 0.53 4.42 16 16 C 0.45 19.29 7.85 87.66 0.69 19.98 16 17 O -0.61 -30.98 15.24 -3.08 -0.05 -31.02 16 18 N -0.58 -26.61 5.09 -306.98 -1.56 -28.18 16 19 C -0.33 -18.68 10.16 84.04 0.85 -17.82 16 20 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 21 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 22 N -0.93 -54.19 13.96 21.67 0.30 -53.89 16 23 Si 0.96 38.24 27.74 68.60 1.90 40.15 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.24 -8.12 6.52 99.48 0.65 -7.47 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.99 7.18 -2.39 -0.02 0.97 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.11 1.96 6.43 -2.38 -0.02 1.95 16 36 H 0.14 1.74 8.05 -2.39 -0.02 1.72 16 37 H 0.41 11.92 7.44 -92.71 -0.69 11.23 16 38 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 41 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.45 370.91 2.31 -75.14 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.19 Total: 37.13 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.43 Total: 15.27 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.84 Total: -105.58 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.91 Total: -60.62 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.15 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -77.45 2.31 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344152457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.498 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds