Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47085 * 2 1 4 4 C 1.35978 * 116.99896 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.98691 * 0.02562 * 4 3 2 6 6 C 1.38059 * 120.03416 * 179.97438 * 5 4 3 7 7 C 1.38934 * 120.00260 * 0.02562 * 6 5 4 8 8 N 1.39865 * 120.01827 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99823 * 33.36168 * 8 7 6 10 10 O 1.21387 * 120.00349 * 5.28170 * 9 8 7 11 11 C 1.49336 * 120.00046 * 185.27970 * 9 8 7 12 12 O 1.21367 * 119.99613 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00627 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00262 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.46988 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00292 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47020 * 90.00224 * 20 18 16 22 22 H 1.48495 * 109.47557 * 210.00556 * 20 18 16 23 23 H 1.48502 * 109.47155 * 330.00719 * 20 18 16 24 24 C 1.38896 * 119.96226 * 359.74478 * 7 6 5 25 25 C 1.38165 * 119.97193 * 0.50954 * 24 7 6 26 26 Cl 1.73597 * 120.00191 * 179.77158 * 25 24 7 27 27 H 1.09002 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46996 * 299.99427 * 1 2 3 29 29 H 1.09001 * 109.47325 * 59.99572 * 1 2 3 30 30 H 1.09001 * 109.46611 * 240.00623 * 2 1 3 31 31 H 1.08992 * 109.47466 * 120.00347 * 2 1 3 32 32 H 1.07997 * 119.97969 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.99824 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99837 * 213.37171 * 8 7 6 35 35 H 0.97006 * 119.99223 * 0.02562 * 13 11 9 36 36 H 1.09000 * 109.47488 * 300.00400 * 14 13 11 37 37 H 1.09002 * 109.46682 * 60.00540 * 14 13 11 38 38 H 1.09000 * 109.47386 * 300.00527 * 15 14 13 39 39 H 1.09002 * 109.46915 * 60.00747 * 15 14 13 40 40 H 0.96999 * 120.00416 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.01531 * 180.25569 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.1992 0.4251 -0.0016 6 6 5.5680 0.6048 -0.0027 7 6 6.1002 1.8882 -0.0022 8 7 7.4869 2.0707 -0.0027 9 6 8.2818 1.1925 -0.6455 10 8 7.7910 0.2983 -1.3035 11 6 9.7666 1.3194 -0.5483 12 8 10.2573 2.2132 0.1100 13 7 10.5616 0.4416 -1.1914 14 6 12.0182 0.5665 -1.0964 15 6 12.6797 -0.5464 -1.9117 16 6 14.1781 -0.4175 -1.8146 17 1 14.6148 0.3783 -1.2295 18 6 14.9914 -1.3161 -2.4718 19 7 14.4596 -2.2856 -3.1839 20 14 16.8486 -1.1569 -2.3508 21 1 17.3382 -1.9427 -1.1897 22 1 17.4719 -1.6728 -3.5959 23 1 17.2122 0.2716 -2.1703 24 6 5.2543 2.9899 -0.0059 25 6 3.8846 2.8085 0.0005 26 17 2.8268 4.1850 0.0018 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7858 -0.5726 -0.0024 33 1 6.2251 -0.2522 -0.0039 34 1 7.8764 2.8292 0.4596 35 1 10.1693 -0.2726 -1.7178 36 1 12.3260 1.5362 -1.4877 37 1 12.3227 0.4823 -0.0532 38 1 12.3718 -1.5159 -1.5201 39 1 12.3752 -0.4626 -2.9550 40 1 15.0318 -2.9176 -3.6465 41 1 5.6671 3.9880 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344424468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -94.195717 kcal Electronic energy + Delta-G solvation = -25450.988184 eV Core-core repulsion = 21357.151173 eV Total energy + Delta-G solvation = -4093.837010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23978 -40.28797 -38.85320 -37.74828 -36.73516 -35.44576 -34.53565 -32.91257 -32.18477 -31.23467 -29.93919 -29.08979 -25.88764 -24.63289 -24.18457 -22.72505 -21.95606 -21.08956 -20.30832 -18.92091 -18.63523 -17.66860 -16.77506 -16.59409 -16.51098 -16.04943 -15.76897 -15.14494 -14.95997 -14.67469 -14.53826 -14.35511 -14.24619 -14.04486 -13.64054 -13.25783 -13.03611 -12.91886 -12.79789 -12.40107 -12.36261 -11.97690 -11.71903 -11.46678 -11.31432 -11.27977 -11.16388 -11.10099 -10.70444 -10.46003 -10.26601 -9.87799 -9.55181 -9.31479 -9.24544 -8.80407 -8.46468 -8.13676 -6.14010 -4.17952 0.70042 0.74176 1.49821 1.77459 2.32054 2.71548 3.09057 3.26551 3.33076 3.35515 3.36478 3.66046 4.27409 4.36056 4.44142 4.47326 4.56148 4.68546 4.73989 4.78118 4.94478 5.09719 5.20432 5.23035 5.31119 5.33969 5.59391 5.74351 5.80623 5.88709 6.09517 6.16601 6.29342 6.48151 6.60851 6.81039 6.88093 7.36145 7.50413 7.51955 7.73010 7.82638 8.10279 8.24083 8.87567 9.47292 10.97384 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.001750 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.681605 B =15995.801301 C =16897.247148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.304 6.304 4 C 0.127 3.873 5 C -0.176 4.176 6 C -0.073 4.073 7 C 0.123 3.877 8 N -0.646 5.646 9 C 0.510 3.490 10 O -0.500 6.500 11 C 0.500 3.500 12 O -0.529 6.529 13 N -0.682 5.682 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.095 4.095 25 C -0.051 4.051 26 Cl -0.053 7.053 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.425 0.575 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.773 6.859 7.634 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.218 6.218 4 C 0.080 3.920 5 C -0.196 4.196 6 C -0.093 4.093 7 C 0.029 3.971 8 N -0.294 5.294 9 C 0.292 3.708 10 O -0.373 6.373 11 C 0.279 3.721 12 O -0.406 6.406 13 N -0.333 5.333 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.116 4.116 25 C -0.079 4.079 26 Cl -0.024 7.024 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.875 6.928 7.502 29.687 hybrid contribution 1.048 -0.104 -0.071 1.056 sum -26.827 6.823 7.431 28.661 Atomic orbital electron populations 1.21769 0.92467 1.02960 1.03657 1.22869 0.96141 0.81614 1.01722 1.86158 1.17792 1.29551 1.88298 1.18615 0.83392 0.92179 0.97815 1.21096 0.93286 0.98077 1.07126 1.21112 0.94816 0.96686 0.96698 1.17408 0.82511 0.93370 1.03823 1.43119 1.03951 1.29528 1.52775 1.20677 0.88825 0.82149 0.79135 1.90780 1.76124 1.32526 1.37838 1.19689 0.86531 0.83864 0.82019 1.90762 1.75701 1.33422 1.40747 1.46245 1.08856 1.30086 1.48119 1.21987 0.74567 1.02013 1.01767 1.19366 0.95669 0.92464 0.95191 1.21000 0.90425 1.13606 1.31278 0.92128 1.25001 0.99208 0.95080 0.94964 1.69955 1.35510 1.15915 1.31643 0.86488 0.84900 0.78487 0.77535 1.20537 1.21140 1.19710 1.20603 0.90151 0.99161 1.01728 1.19762 0.90561 0.86498 1.11055 1.98371 1.65534 1.41440 1.97068 0.90236 0.91451 0.91408 0.91672 0.91743 0.84031 0.83602 0.73689 0.75288 0.91670 0.91683 0.95627 0.95610 0.92739 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.28 37.16 0.38 -0.31 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.30 -2.80 9.59 -19.67 -0.19 -2.99 16 4 C 0.13 1.25 6.68 -39.18 -0.26 0.99 16 5 C -0.18 -1.62 9.03 -39.47 -0.36 -1.97 16 6 C -0.07 -0.78 8.65 -39.39 -0.34 -1.12 16 7 C 0.12 1.31 6.28 -83.69 -0.53 0.79 16 8 N -0.65 -7.13 5.33 -10.27 -0.05 -7.19 16 9 C 0.51 7.00 7.62 -11.64 -0.09 6.91 16 10 O -0.50 -7.58 14.16 5.46 0.08 -7.50 16 11 C 0.50 7.96 7.89 -11.64 -0.09 7.87 16 12 O -0.53 -9.33 16.48 5.48 0.09 -9.24 16 13 N -0.68 -11.63 5.55 -60.77 -0.34 -11.96 16 14 C 0.12 2.36 5.61 -4.04 -0.02 2.33 16 15 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.10 -0.90 9.74 -39.36 -0.38 -1.28 16 25 C -0.05 -0.51 6.33 -39.39 -0.25 -0.76 16 26 Cl -0.05 -0.51 28.50 -51.86 -1.48 -1.99 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.14 0.97 6.29 -52.49 -0.33 0.64 16 33 H 0.15 1.65 6.41 -52.49 -0.34 1.32 16 34 H 0.42 3.96 8.30 -40.82 -0.34 3.62 16 35 H 0.41 6.62 7.94 -40.82 -0.32 6.29 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.01 372.33 -7.90 -38.91 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.05 Total: 4.16 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.29 Total: 1.19 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.34 Total: -44.08 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.02 Total: -19.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -1.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.01 -7.90 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344424468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.289 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds