Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47085 * 2 1 4 4 C 1.35978 * 116.99896 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.98691 * 0.02562 * 4 3 2 6 6 C 1.38059 * 120.03416 * 179.97438 * 5 4 3 7 7 C 1.38934 * 120.00260 * 0.02562 * 6 5 4 8 8 N 1.39865 * 120.01827 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99823 * 33.36168 * 8 7 6 10 10 O 1.21387 * 120.00349 * 5.28170 * 9 8 7 11 11 C 1.49336 * 120.00046 * 185.27970 * 9 8 7 12 12 O 1.21367 * 119.99613 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00627 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00262 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.46988 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00292 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47020 * 90.00224 * 20 18 16 22 22 H 1.48495 * 109.47557 * 210.00556 * 20 18 16 23 23 H 1.48502 * 109.47155 * 330.00719 * 20 18 16 24 24 C 1.38896 * 119.96226 * 359.74478 * 7 6 5 25 25 C 1.38165 * 119.97193 * 0.50954 * 24 7 6 26 26 Cl 1.73597 * 120.00191 * 179.77158 * 25 24 7 27 27 H 1.09002 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46996 * 299.99427 * 1 2 3 29 29 H 1.09001 * 109.47325 * 59.99572 * 1 2 3 30 30 H 1.09001 * 109.46611 * 240.00623 * 2 1 3 31 31 H 1.08992 * 109.47466 * 120.00347 * 2 1 3 32 32 H 1.07997 * 119.97969 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.99824 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99837 * 213.37171 * 8 7 6 35 35 H 0.97006 * 119.99223 * 0.02562 * 13 11 9 36 36 H 1.09000 * 109.47488 * 300.00400 * 14 13 11 37 37 H 1.09002 * 109.46682 * 60.00540 * 14 13 11 38 38 H 1.09000 * 109.47386 * 300.00527 * 15 14 13 39 39 H 1.09002 * 109.46915 * 60.00747 * 15 14 13 40 40 H 0.96999 * 120.00416 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.01531 * 180.25569 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.1992 0.4251 -0.0016 6 6 5.5680 0.6048 -0.0027 7 6 6.1002 1.8882 -0.0022 8 7 7.4869 2.0707 -0.0027 9 6 8.2818 1.1925 -0.6455 10 8 7.7910 0.2983 -1.3035 11 6 9.7666 1.3194 -0.5483 12 8 10.2573 2.2132 0.1100 13 7 10.5616 0.4416 -1.1914 14 6 12.0182 0.5665 -1.0964 15 6 12.6797 -0.5464 -1.9117 16 6 14.1781 -0.4175 -1.8146 17 1 14.6148 0.3783 -1.2295 18 6 14.9914 -1.3161 -2.4718 19 7 14.4596 -2.2856 -3.1839 20 14 16.8486 -1.1569 -2.3508 21 1 17.3382 -1.9427 -1.1897 22 1 17.4719 -1.6728 -3.5959 23 1 17.2122 0.2716 -2.1703 24 6 5.2543 2.9899 -0.0059 25 6 3.8846 2.8085 0.0005 26 17 2.8268 4.1850 0.0018 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7858 -0.5726 -0.0024 33 1 6.2251 -0.2522 -0.0039 34 1 7.8764 2.8292 0.4596 35 1 10.1693 -0.2726 -1.7178 36 1 12.3260 1.5362 -1.4877 37 1 12.3227 0.4823 -0.0532 38 1 12.3718 -1.5159 -1.5201 39 1 12.3752 -0.4626 -2.9550 40 1 15.0318 -2.9176 -3.6465 41 1 5.6671 3.9880 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344424468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -114.466675 kcal Electronic energy + Delta-G solvation = -25451.867199 eV Core-core repulsion = 21357.151173 eV Total energy + Delta-G solvation = -4094.716025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24683 -41.16321 -39.98273 -38.62253 -37.52422 -36.88735 -35.63715 -34.78946 -32.69360 -31.96748 -31.71549 -29.94239 -27.44971 -25.66120 -25.18354 -23.69250 -22.86154 -22.57248 -21.46948 -19.95407 -19.43964 -18.69267 -18.48581 -17.65418 -17.34177 -17.11728 -16.89691 -16.51215 -16.24489 -16.00179 -15.70699 -15.31402 -15.02438 -14.91106 -14.81307 -14.51569 -14.30592 -13.88747 -13.45059 -13.33587 -13.25703 -13.11713 -12.94567 -12.81287 -12.70107 -12.52720 -12.28170 -12.14589 -11.90223 -11.82153 -11.68347 -11.43749 -11.09270 -10.76905 -10.61196 -10.23325 -10.02025 -8.93162 -8.23111 -6.34031 -0.20460 -0.01244 0.43480 0.95272 1.26380 1.44108 1.44407 1.55723 1.97702 2.10385 2.39075 2.48347 2.56642 3.12160 3.28836 3.62326 3.79033 3.96644 4.07687 4.13324 4.22836 4.36279 4.38273 4.41562 4.45998 4.52914 4.82112 4.85372 4.93109 4.96448 5.03415 5.04209 5.09724 5.26368 5.41820 5.48159 5.55744 5.75126 5.83899 6.13148 6.22934 6.26694 6.58637 6.78306 6.84622 7.35614 8.88741 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.001750 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.681605 B =15995.801301 C =16897.247148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.317 6.317 4 C 0.127 3.873 5 C -0.173 4.173 6 C -0.082 4.082 7 C 0.106 3.894 8 N -0.629 5.629 9 C 0.518 3.482 10 O -0.516 6.516 11 C 0.506 3.494 12 O -0.544 6.544 13 N -0.685 5.685 14 C 0.137 3.863 15 C 0.017 3.983 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.086 4.086 25 C -0.064 4.064 26 Cl -0.052 7.052 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.433 0.567 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.467 7.370 8.283 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.231 6.231 4 C 0.079 3.921 5 C -0.193 4.193 6 C -0.102 4.102 7 C 0.012 3.988 8 N -0.277 5.277 9 C 0.300 3.700 10 O -0.391 6.391 11 C 0.286 3.714 12 O -0.422 6.422 13 N -0.336 5.336 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.107 4.107 25 C -0.092 4.092 26 Cl -0.023 7.023 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.273 0.727 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.609 7.466 8.176 30.677 hybrid contribution 1.104 -0.254 -0.246 1.159 sum -27.505 7.211 7.930 29.520 Atomic orbital electron populations 1.21797 0.91455 1.04149 1.03204 1.23164 0.97000 0.80408 1.02715 1.86162 1.17319 1.31554 1.88022 1.18768 0.83928 0.92289 0.97092 1.21271 0.92586 0.99051 1.06359 1.21161 0.95441 0.96491 0.97095 1.17496 0.82029 0.93897 1.05406 1.42944 1.04125 1.28899 1.51717 1.20094 0.87675 0.82614 0.79587 1.90785 1.75934 1.33425 1.38918 1.19967 0.87529 0.82928 0.80989 1.90752 1.76359 1.33889 1.41206 1.46047 1.07826 1.30858 1.48864 1.21511 0.76135 1.00138 1.00724 1.19189 0.95031 0.93101 0.94694 1.21456 0.92034 1.13671 1.31130 0.91661 1.25898 1.04134 0.94731 0.94590 1.70071 1.37260 1.16788 1.32592 0.85420 0.79017 0.78844 0.77615 1.19825 1.20863 1.18781 1.20729 0.89838 0.99666 1.00453 1.19936 0.90880 0.86827 1.11575 1.98370 1.65493 1.41327 1.97087 0.88226 0.91775 0.91972 0.90875 0.90494 0.81876 0.84442 0.72667 0.74750 0.91836 0.91772 0.97272 0.97340 0.92605 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 71.98 0.74 -0.37 16 2 C 0.04 0.42 5.46 71.98 0.39 0.82 16 3 O -0.32 -5.37 9.59 -93.30 -0.89 -6.27 16 4 C 0.13 2.31 6.68 22.53 0.15 2.46 16 5 C -0.17 -2.92 9.03 22.34 0.20 -2.72 16 6 C -0.08 -1.66 8.65 22.39 0.19 -1.47 16 7 C 0.11 2.12 6.28 38.18 0.24 2.36 16 8 N -0.63 -13.14 5.33 -304.76 -1.62 -14.77 16 9 C 0.52 13.84 7.62 87.23 0.66 14.50 16 10 O -0.52 -15.39 14.16 -3.36 -0.05 -15.43 16 11 C 0.51 15.79 7.89 87.23 0.69 16.48 16 12 O -0.54 -18.70 16.48 -3.30 -0.05 -18.75 16 13 N -0.68 -23.28 5.55 -464.53 -2.58 -25.86 16 14 C 0.14 5.49 5.61 86.38 0.48 5.98 16 15 C 0.02 0.85 5.09 29.85 0.15 1.00 16 16 C -0.54 -29.42 9.11 25.60 0.23 -29.18 16 17 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.29 5.46 84.65 0.46 0.75 16 19 N -0.93 -53.97 13.29 21.45 0.28 -53.68 16 20 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 C -0.09 -1.50 9.74 22.41 0.22 -1.28 16 25 C -0.06 -1.20 6.33 22.40 0.14 -1.06 16 26 Cl -0.05 -0.93 28.50 -2.72 -0.08 -1.01 16 27 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 31 H 0.08 0.59 7.66 -2.39 -0.02 0.58 16 32 H 0.16 1.90 6.29 -2.91 -0.02 1.89 16 33 H 0.14 3.04 6.41 -2.91 -0.02 3.02 16 34 H 0.43 7.46 8.30 -92.71 -0.77 6.69 16 35 H 0.42 13.49 7.94 -92.70 -0.74 12.76 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -65.34 372.33 1.59 -63.75 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.41 Total: 18.99 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.96 Total: 8.27 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.92 Total: -94.31 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.00 Total: -40.45 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -65.34 1.59 -63.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344424468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.719 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds