Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35529 * 125.68298 * 2 1 4 4 C 1.35450 * 108.87213 * 179.97438 * 3 2 1 5 5 S 1.76204 * 126.06440 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39904 * 203.53730 * 5 4 3 7 7 O 1.42101 * 106.40184 * 336.44853 * 5 4 3 8 8 N 1.65601 * 107.22303 * 89.99496 * 5 4 3 9 9 C 1.46501 * 119.99775 * 89.99750 * 8 5 4 10 10 C 1.50691 * 109.46809 * 95.00458 * 9 8 5 11 11 H 1.07998 * 120.00488 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99675 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99920 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47032 * 89.99584 * 14 12 10 16 16 H 1.48499 * 109.46976 * 209.99800 * 14 12 10 17 17 H 1.48498 * 109.46848 * 329.99827 * 14 12 10 18 18 C 1.46501 * 119.99878 * 270.00039 * 8 5 4 19 19 C 1.53002 * 109.47040 * 94.99512 * 18 8 5 20 20 C 1.47197 * 109.46632 * 179.97438 * 19 18 8 21 21 N 6.50920 * 98.80682 * 41.92287 * 2 1 3 22 22 C 1.39832 * 107.86911 * 359.97438 * 4 3 2 23 23 C 1.37658 * 125.67387 * 179.68700 * 2 1 3 24 24 C 1.46679 * 126.23194 * 0.02597 * 23 2 1 25 25 N 1.34777 * 119.99703 * 185.56245 * 24 23 2 26 26 O 1.21693 * 120.00344 * 5.56261 * 24 23 2 27 27 H 1.09004 * 109.47041 * 86.10751 * 1 2 3 28 28 H 1.08996 * 109.47061 * 326.11644 * 1 2 3 29 29 H 1.08991 * 109.47585 * 206.11194 * 1 2 3 30 30 H 1.08003 * 125.56345 * 359.97438 * 3 2 1 31 31 H 1.09007 * 109.46454 * 215.00258 * 9 8 5 32 32 H 1.08996 * 109.47126 * 334.99572 * 9 8 5 33 33 H 0.97002 * 119.99838 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.46756 * 214.99602 * 18 8 5 35 35 H 1.09001 * 109.47019 * 334.99689 * 18 8 5 36 36 H 1.08998 * 109.47261 * 300.00208 * 19 18 8 37 37 H 1.09001 * 109.47070 * 60.00208 * 19 18 8 38 38 H 1.08002 * 126.46034 * 180.02562 * 22 4 3 39 39 H 0.96998 * 119.99829 * 5.05845 * 25 24 23 40 40 H 0.96995 * 119.99845 * 185.06958 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 0.0006 5 16 4.9571 1.7726 0.0002 6 8 6.0314 1.0179 -0.5435 7 8 4.5229 3.0107 -0.5455 8 7 5.3476 2.0697 1.5818 9 6 6.2860 1.1895 2.2824 10 6 7.6737 1.7720 2.2056 11 1 7.8401 2.7043 1.6866 12 6 8.7310 1.1146 2.7981 13 7 8.5283 -0.0206 3.4307 14 14 10.4514 1.8362 2.7024 15 1 10.6783 2.7308 3.8658 16 1 11.4505 0.7377 2.7203 17 1 10.5927 2.6136 1.4452 18 6 4.7545 3.2128 2.2804 19 6 3.5171 2.7520 3.0533 20 6 2.9217 3.9004 3.7557 21 7 2.4616 4.7860 4.2977 22 6 3.5780 -0.6890 0.0015 23 6 2.2678 -1.1182 0.0061 24 6 1.8122 -2.5125 0.0132 25 7 2.7072 -3.5132 0.1319 26 8 0.6262 -2.7657 -0.0881 27 1 -0.3633 0.0698 -1.0253 28 1 -0.3633 0.8531 0.5729 29 1 -0.3634 -0.9227 0.4523 30 1 1.9083 2.1235 -0.0004 31 1 5.9875 1.0980 3.3268 32 1 6.2787 0.2049 1.8149 33 1 9.2722 -0.4832 3.8472 34 1 5.4823 3.6310 2.9756 35 1 4.4670 3.9731 1.5542 36 1 2.7893 2.3336 2.3581 37 1 3.8046 1.9916 3.7795 38 1 4.4583 -1.3146 0.0026 39 1 3.6432 -3.3109 0.2861 40 1 2.4153 -4.4356 0.0628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345930567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -34.607389 kcal Electronic energy + Delta-G solvation = -27749.090925 eV Core-core repulsion = 23692.174316 eV Total energy + Delta-G solvation = -4056.916609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64430 -38.99974 -37.21739 -36.57806 -35.71834 -35.16932 -34.28526 -32.93111 -32.76525 -30.73253 -29.60068 -26.96424 -26.92746 -23.82132 -23.47641 -22.18180 -21.48594 -19.98423 -18.74741 -18.03115 -17.38192 -16.95091 -16.84323 -16.44641 -16.17851 -15.86637 -15.44547 -15.35244 -14.74074 -14.54649 -14.47132 -14.23735 -13.90809 -13.64989 -13.48324 -12.86682 -12.76785 -12.62555 -12.58035 -12.46509 -12.34429 -11.96108 -11.69070 -11.46939 -11.36621 -11.12492 -10.94663 -10.85220 -10.59724 -10.53842 -10.34545 -10.05055 -9.97962 -9.83803 -9.29935 -8.61799 -8.47540 -8.22985 -6.10602 -4.13876 1.00042 1.21262 1.96778 2.40267 2.80943 2.86773 3.10534 3.30722 3.37830 3.40662 3.43283 3.65696 4.19826 4.36064 4.42856 4.49010 4.62424 4.65594 4.88112 4.96121 5.10173 5.21405 5.25234 5.28744 5.30322 5.38761 5.53068 5.71905 5.82597 6.19490 6.26428 6.38485 6.54388 6.56923 6.83473 7.07888 7.12854 7.30431 7.47604 7.63587 7.87241 7.96810 8.14815 8.88671 9.51928 10.97922 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.004385 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.994043 B = 6384.099562 C = 7757.478311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.402 5.402 3 C 0.131 3.869 4 C -0.746 4.746 5 S 2.709 3.291 6 O -0.939 6.939 7 O -0.979 6.979 8 N -0.980 5.980 9 C 0.255 3.745 10 C -0.529 4.529 11 H 0.062 0.938 12 C 0.065 3.935 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.127 3.873 19 C -0.054 4.054 20 C 0.219 3.781 21 N -0.447 5.447 22 C -0.038 4.038 23 C -0.070 4.070 24 C 0.600 3.400 25 N -0.840 5.840 26 O -0.557 6.557 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.187 0.813 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.162 0.838 39 H 0.409 0.591 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 -3.875 -4.910 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.073 5.073 3 C -0.012 4.012 4 C -0.837 4.837 5 S 2.797 3.203 6 O -0.929 6.929 7 O -0.970 6.970 8 N -0.818 5.818 9 C 0.133 3.867 10 C -0.568 4.568 11 H 0.081 0.919 12 C -0.138 4.138 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.002 4.002 19 C -0.096 4.096 20 C -0.099 4.099 21 N -0.124 5.124 22 C -0.063 4.063 23 C -0.181 4.181 24 C 0.387 3.613 25 N -0.404 5.404 26 O -0.437 6.437 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.204 0.796 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.180 0.820 39 H 0.239 0.761 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.083 -2.486 -4.803 16.023 hybrid contribution 0.939 -0.824 0.215 1.267 sum -14.144 -3.310 -4.588 15.233 Atomic orbital electron populations 1.22423 0.75583 1.05910 1.04275 1.44136 1.07147 1.05082 1.50960 1.21863 0.88687 0.92086 0.98584 1.31593 1.15675 1.09881 1.26554 1.01477 0.72861 0.73041 0.72953 1.93599 1.50624 1.72587 1.76126 1.93496 1.83784 1.42573 1.77126 1.57503 1.55718 1.37508 1.31065 1.19153 0.86222 0.88363 0.92946 1.21479 0.92287 1.08252 1.34819 0.91947 1.24887 0.99116 0.94783 0.94991 1.69902 1.32081 1.15736 1.35726 0.86555 0.83912 0.78782 0.78570 1.20700 1.21153 1.19632 1.21084 0.93002 0.88661 0.97409 1.19957 0.98413 0.91436 0.99808 1.29080 0.93173 0.94352 0.93315 1.81184 1.09900 1.11177 1.10172 1.21081 0.95064 0.92893 0.97294 1.20085 0.90403 0.87651 1.19989 1.16871 0.85337 0.83875 0.75262 1.43475 1.12258 1.08974 1.75664 1.90811 1.16293 1.84977 1.51662 0.90094 0.89455 0.87461 0.79607 0.94317 0.93854 0.92703 0.88241 0.89165 0.88291 0.86278 0.82021 0.76070 0.75922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.64 59.85 0.64 1.11 16 2 N -0.40 -4.40 3.16 -120.24 -0.38 -4.78 16 3 C 0.13 1.45 10.32 -16.91 -0.17 1.28 16 4 C -0.75 -10.16 6.17 -39.98 -0.25 -10.40 16 5 S 2.71 46.16 5.79 -107.50 -0.62 45.53 16 6 O -0.94 -19.83 16.84 -57.17 -0.96 -20.79 16 7 O -0.98 -17.34 16.40 -57.17 -0.94 -18.28 16 8 N -0.98 -16.67 2.77 -115.66 -0.32 -16.99 16 9 C 0.25 5.41 5.10 -5.20 -0.03 5.39 16 10 C -0.53 -13.34 9.38 -34.44 -0.32 -13.66 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.90 -24.07 13.29 55.43 0.74 -23.33 16 14 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.13 1.75 5.63 -4.04 -0.02 1.73 16 19 C -0.05 -0.58 6.02 -29.52 -0.18 -0.76 16 20 C 0.22 2.75 15.43 -20.77 -0.32 2.43 16 21 N -0.45 -6.75 18.54 42.14 0.78 -5.97 16 22 C -0.04 -0.49 10.14 -39.12 -0.40 -0.88 16 23 C -0.07 -0.85 6.88 -81.98 -0.56 -1.41 16 24 C 0.60 7.02 8.04 -12.85 -0.10 6.91 16 25 N -0.84 -6.82 8.85 30.26 0.27 -6.55 16 26 O -0.56 -7.82 15.49 5.19 0.08 -7.74 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.11 1.00 6.21 -51.93 -0.32 0.67 16 30 H 0.19 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.04 0.82 8.11 -51.92 -0.42 0.40 16 32 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 35 H 0.09 1.17 6.91 -51.93 -0.36 0.81 16 36 H 0.10 0.85 7.31 -51.93 -0.38 0.47 16 37 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.16 1.88 7.49 -52.49 -0.39 1.49 16 39 H 0.41 2.70 7.78 -40.82 -0.32 2.38 16 40 H 0.41 2.56 8.93 -40.82 -0.36 2.19 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -35.52 368.29 -7.26 -42.77 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.61 Total: 1.71 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.82 Total: -6.68 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 1.08 Total: -57.63 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -1.82 Total: -46.81 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.62 Total: 45.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.52 -7.26 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345930567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.166 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds