Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35529 * 125.68298 * 2 1 4 4 C 1.35450 * 108.87213 * 179.97438 * 3 2 1 5 5 S 1.76204 * 126.06440 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39904 * 203.53730 * 5 4 3 7 7 O 1.42101 * 106.40184 * 336.44853 * 5 4 3 8 8 N 1.65601 * 107.22303 * 89.99496 * 5 4 3 9 9 C 1.46501 * 119.99775 * 89.99750 * 8 5 4 10 10 C 1.50691 * 109.46809 * 95.00458 * 9 8 5 11 11 H 1.07998 * 120.00488 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99675 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99920 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47032 * 89.99584 * 14 12 10 16 16 H 1.48499 * 109.46976 * 209.99800 * 14 12 10 17 17 H 1.48498 * 109.46848 * 329.99827 * 14 12 10 18 18 C 1.46501 * 119.99878 * 270.00039 * 8 5 4 19 19 C 1.53002 * 109.47040 * 94.99512 * 18 8 5 20 20 C 1.47197 * 109.46632 * 179.97438 * 19 18 8 21 21 N 6.50920 * 98.80682 * 41.92287 * 2 1 3 22 22 C 1.39832 * 107.86911 * 359.97438 * 4 3 2 23 23 C 1.37658 * 125.67387 * 179.68700 * 2 1 3 24 24 C 1.46679 * 126.23194 * 0.02597 * 23 2 1 25 25 N 1.34777 * 119.99703 * 185.56245 * 24 23 2 26 26 O 1.21693 * 120.00344 * 5.56261 * 24 23 2 27 27 H 1.09004 * 109.47041 * 86.10751 * 1 2 3 28 28 H 1.08996 * 109.47061 * 326.11644 * 1 2 3 29 29 H 1.08991 * 109.47585 * 206.11194 * 1 2 3 30 30 H 1.08003 * 125.56345 * 359.97438 * 3 2 1 31 31 H 1.09007 * 109.46454 * 215.00258 * 9 8 5 32 32 H 1.08996 * 109.47126 * 334.99572 * 9 8 5 33 33 H 0.97002 * 119.99838 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.46756 * 214.99602 * 18 8 5 35 35 H 1.09001 * 109.47019 * 334.99689 * 18 8 5 36 36 H 1.08998 * 109.47261 * 300.00208 * 19 18 8 37 37 H 1.09001 * 109.47070 * 60.00208 * 19 18 8 38 38 H 1.08002 * 126.46034 * 180.02562 * 22 4 3 39 39 H 0.96998 * 119.99829 * 5.05845 * 25 24 23 40 40 H 0.96995 * 119.99845 * 185.06958 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1008 0.0000 4 6 3.5522 0.7091 0.0006 5 16 4.9571 1.7726 0.0002 6 8 6.0314 1.0179 -0.5435 7 8 4.5229 3.0107 -0.5455 8 7 5.3476 2.0697 1.5818 9 6 6.2860 1.1895 2.2824 10 6 7.6737 1.7720 2.2056 11 1 7.8401 2.7043 1.6866 12 6 8.7310 1.1146 2.7981 13 7 8.5283 -0.0206 3.4307 14 14 10.4514 1.8362 2.7024 15 1 10.6783 2.7308 3.8658 16 1 11.4505 0.7377 2.7203 17 1 10.5927 2.6136 1.4452 18 6 4.7545 3.2128 2.2804 19 6 3.5171 2.7520 3.0533 20 6 2.9217 3.9004 3.7557 21 7 2.4616 4.7860 4.2977 22 6 3.5780 -0.6890 0.0015 23 6 2.2678 -1.1182 0.0061 24 6 1.8122 -2.5125 0.0132 25 7 2.7072 -3.5132 0.1319 26 8 0.6262 -2.7657 -0.0881 27 1 -0.3633 0.0698 -1.0253 28 1 -0.3633 0.8531 0.5729 29 1 -0.3634 -0.9227 0.4523 30 1 1.9083 2.1235 -0.0004 31 1 5.9875 1.0980 3.3268 32 1 6.2787 0.2049 1.8149 33 1 9.2722 -0.4832 3.8472 34 1 5.4823 3.6310 2.9756 35 1 4.4670 3.9731 1.5542 36 1 2.7893 2.3336 2.3581 37 1 3.8046 1.9916 3.7795 38 1 4.4583 -1.3146 0.0026 39 1 3.6432 -3.3109 0.2861 40 1 2.4153 -4.4356 0.0628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345930567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -62.238310 kcal Electronic energy + Delta-G solvation = -27750.289091 eV Core-core repulsion = 23692.174316 eV Total energy + Delta-G solvation = -4058.114776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54175 -39.89892 -38.39136 -37.99626 -37.00700 -36.61944 -35.10609 -34.59772 -33.75816 -32.02115 -30.51253 -28.64319 -27.70411 -25.26783 -24.39458 -23.65745 -22.49587 -20.85367 -19.72342 -19.30305 -18.48209 -18.25135 -18.15097 -17.73345 -17.18607 -16.85356 -16.71005 -16.41465 -16.18060 -15.78232 -15.39934 -15.17988 -15.09241 -14.80266 -14.49804 -14.30414 -13.84470 -13.73208 -13.60408 -13.42889 -13.35542 -13.32865 -13.07970 -12.93182 -12.81600 -12.76588 -12.56537 -12.23969 -12.09012 -11.99692 -11.63667 -11.55315 -11.28867 -10.77275 -10.45169 -10.24377 -9.73270 -9.52053 -8.07763 -6.15401 -0.31574 0.32736 0.95712 1.47171 1.50433 1.59065 1.60239 1.78147 1.87148 2.18455 2.39983 2.52662 2.65541 3.10631 3.16938 3.25971 3.45430 3.86330 3.94221 3.98910 4.06294 4.20026 4.27382 4.39435 4.47628 4.58977 4.62423 4.73777 4.85648 5.12670 5.18512 5.35573 5.42623 5.62450 5.64590 5.84359 5.84928 6.00752 6.04227 6.27189 6.32073 6.64149 6.93032 7.19315 7.52430 8.99217 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.004385 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.994043 B = 6384.099562 C = 7757.478311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.399 5.399 3 C 0.148 3.852 4 C -0.760 4.760 5 S 2.721 3.279 6 O -0.990 6.990 7 O -0.989 6.989 8 N -0.982 5.982 9 C 0.268 3.732 10 C -0.541 4.541 11 H 0.053 0.947 12 C 0.019 3.981 13 N -0.920 5.920 14 Si 0.941 3.059 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.120 3.880 19 C -0.043 4.043 20 C 0.245 3.755 21 N -0.490 5.490 22 C -0.050 4.050 23 C -0.075 4.075 24 C 0.596 3.404 25 N -0.823 5.823 26 O -0.584 6.584 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.222 0.778 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.418 0.582 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.251 -3.661 -4.962 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.069 5.069 3 C 0.003 3.997 4 C -0.855 4.855 5 S 2.813 3.187 6 O -0.980 6.980 7 O -0.980 6.980 8 N -0.819 5.819 9 C 0.145 3.855 10 C -0.581 4.581 11 H 0.071 0.929 12 C -0.180 4.180 13 N -0.561 5.561 14 Si 0.768 3.232 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.008 4.008 19 C -0.085 4.085 20 C -0.072 4.072 21 N -0.168 5.168 22 C -0.075 4.075 23 C -0.187 4.187 24 C 0.383 3.617 25 N -0.388 5.388 26 O -0.466 6.466 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.238 0.762 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.182 0.818 39 H 0.249 0.751 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.579 -2.251 -4.847 17.419 hybrid contribution 1.348 -0.918 0.169 1.640 sum -15.231 -3.170 -4.678 16.246 Atomic orbital electron populations 1.22664 0.73630 1.06784 1.05514 1.44389 1.08299 1.04558 1.49668 1.22336 0.87643 0.93480 0.96219 1.30911 1.15275 1.09477 1.29860 1.00647 0.72940 0.72717 0.72378 1.93536 1.53681 1.73556 1.77221 1.93474 1.83920 1.43341 1.77231 1.57261 1.55764 1.38009 1.30833 1.18741 0.85426 0.88116 0.93193 1.21885 0.94439 1.07878 1.33895 0.92873 1.25520 1.02043 0.95277 0.95193 1.69969 1.32805 1.16601 1.36689 0.85812 0.80730 0.78232 0.78459 1.19822 1.20955 1.20034 1.21235 0.93942 0.87918 0.97707 1.19935 0.97597 0.90799 1.00147 1.29203 0.92028 0.93753 0.92239 1.81221 1.11505 1.12413 1.11688 1.21208 0.95758 0.92876 0.97686 1.20191 0.90299 0.88357 1.19891 1.16935 0.85294 0.84231 0.75287 1.43393 1.12317 1.09026 1.74023 1.90801 1.17314 1.85301 1.53230 0.89036 0.86089 0.88752 0.76166 0.94000 0.95280 0.92686 0.89220 0.88094 0.85275 0.85239 0.81793 0.75092 0.74728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.64 127.77 1.36 2.05 16 2 N -0.40 -7.55 3.16 -534.32 -1.69 -9.24 16 3 C 0.15 2.79 10.32 83.48 0.86 3.65 16 4 C -0.76 -19.34 6.17 22.01 0.14 -19.21 16 5 S 2.72 90.94 5.79 -56.49 -0.33 90.61 16 6 O -0.99 -42.56 16.84 -128.00 -2.16 -44.72 16 7 O -0.99 -33.68 16.40 -128.00 -2.10 -35.78 16 8 N -0.98 -32.67 2.77 -519.85 -1.44 -34.11 16 9 C 0.27 11.43 5.10 85.63 0.44 11.87 16 10 C -0.54 -27.52 9.38 25.60 0.24 -27.28 16 11 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 12 C 0.02 1.01 5.46 84.66 0.46 1.47 16 13 N -0.92 -49.72 13.29 21.45 0.28 -49.43 16 14 Si 0.94 42.22 29.54 68.60 2.03 44.24 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 C 0.12 3.12 5.63 86.38 0.49 3.61 16 19 C -0.04 -0.81 6.02 28.79 0.17 -0.64 16 20 C 0.25 5.62 15.43 89.44 1.38 7.00 16 21 N -0.49 -14.06 18.54 20.00 0.37 -13.69 16 22 C -0.05 -1.22 10.14 22.57 0.23 -1.00 16 23 C -0.08 -1.70 6.88 40.35 0.28 -1.42 16 24 C 0.60 13.13 8.04 86.45 0.70 13.82 16 25 N -0.82 -12.32 8.85 -176.39 -1.56 -13.88 16 26 O -0.58 -15.67 15.49 -4.33 -0.07 -15.73 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.54 6.21 -2.39 -0.01 1.53 16 30 H 0.22 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.04 1.75 8.11 -2.38 -0.02 1.73 16 32 H 0.03 1.33 7.61 -2.39 -0.02 1.31 16 33 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 35 H 0.10 2.43 6.91 -2.39 -0.02 2.41 16 36 H 0.13 1.70 7.31 -2.39 -0.02 1.69 16 37 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.16 3.80 7.49 -2.91 -0.02 3.78 16 39 H 0.42 5.05 7.78 -92.71 -0.72 4.33 16 40 H 0.42 4.67 8.93 -92.71 -0.83 3.84 16 Total: -1.00 -76.95 368.29 -0.35 -77.30 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.43 Total: 10.51 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 6.74 Total: -6.09 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -4.03 Total: -120.36 kcal Atomic # 8 Polarization: -91.90 SS G_CDS: -4.32 Total: -96.22 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 90.94 SS G_CDS: -0.33 Total: 90.61 kcal Total: -76.95 -0.35 -77.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345930567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.063 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds