Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 O 1.42893 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.35980 * 117.00034 * 179.97438 * 4 3 2 6 6 C 1.38717 * 119.98697 * 359.72211 * 5 4 3 7 7 C 1.38067 * 120.03862 * 179.76345 * 6 5 4 8 8 C 1.38932 * 119.99468 * 0.51404 * 7 6 5 9 9 N 1.39868 * 120.01851 * 179.76487 * 8 7 6 10 10 C 1.34769 * 119.99998 * 213.34034 * 9 8 7 11 11 O 1.21392 * 120.00644 * 5.27556 * 10 9 8 12 12 C 1.49338 * 119.99776 * 185.27127 * 10 9 8 13 13 O 1.21357 * 120.00172 * 0.02562 * 12 10 9 14 14 N 1.34781 * 120.00028 * 179.97438 * 12 10 9 15 15 C 1.46501 * 119.99942 * 180.02562 * 14 12 10 16 16 C 1.50700 * 109.46743 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99576 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46879 * 119.99926 * 20 18 16 23 23 H 1.48499 * 109.46802 * 239.99819 * 20 18 16 24 24 C 1.38907 * 119.96883 * 359.74108 * 8 7 6 25 25 C 1.38160 * 119.96600 * 0.02562 * 24 8 7 26 26 Cl 1.73599 * 120.00267 * 179.97438 * 25 24 8 27 27 H 1.08989 * 109.47363 * 300.00604 * 1 2 3 28 28 H 1.09010 * 109.46492 * 60.00240 * 1 2 3 29 29 H 1.08995 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47558 * 239.99587 * 2 1 3 31 31 H 1.08998 * 109.46832 * 119.99538 * 2 1 3 32 32 H 1.09007 * 109.46579 * 299.99401 * 3 2 1 33 33 H 1.09003 * 109.47080 * 59.99294 * 3 2 1 34 34 H 1.08008 * 119.98324 * 0.02562 * 6 5 4 35 35 H 1.07993 * 120.00617 * 180.22809 * 7 6 5 36 36 H 0.97004 * 119.99663 * 33.33002 * 9 8 7 37 37 H 0.97006 * 119.99791 * 0.02562 * 14 12 10 38 38 H 1.09002 * 109.46685 * 300.00170 * 15 14 12 39 39 H 1.08996 * 109.46906 * 59.99768 * 15 14 12 40 40 H 0.97000 * 119.99791 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.01359 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0864 2.6540 0.0001 6 6 3.3306 3.8172 -0.0067 7 6 3.9563 5.0480 -0.0022 8 6 5.3437 5.1218 -0.0017 9 7 5.9780 6.3684 -0.0021 10 6 7.1529 6.5263 -0.6432 11 8 7.6135 5.6151 -1.2998 12 6 7.8882 7.8225 -0.5459 13 8 7.4280 8.7334 0.1109 14 7 9.0635 7.9803 -1.1865 15 6 9.7851 9.2517 -1.0906 16 6 11.0587 9.1680 -1.8918 17 1 11.3057 8.2591 -2.4200 18 6 11.9081 10.2525 -1.9513 19 7 11.6066 11.3600 -1.3093 20 14 13.4865 10.1491 -2.9450 21 1 13.5921 8.8053 -3.5680 22 1 13.4721 11.1876 -4.0064 23 1 14.6503 10.3721 -2.0501 24 6 6.1005 3.9571 -0.0002 25 6 5.4729 2.7263 0.0002 26 17 6.4179 1.2700 0.0014 27 1 -0.3633 0.5139 0.8898 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8935 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 2.2521 3.7601 -0.0112 35 1 3.3674 5.9532 -0.0038 36 1 5.5722 7.1192 0.4588 37 1 9.4315 7.2521 -1.7112 38 1 9.1609 10.0542 -1.4836 39 1 10.0245 9.4556 -0.0470 40 1 12.2039 12.1230 -1.3515 41 1 7.1791 4.0137 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427851891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -117.109353 kcal Electronic energy + Delta-G solvation = -25597.291762 eV Core-core repulsion = 21502.461142 eV Total energy + Delta-G solvation = -4094.830620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19945 -41.13414 -39.89893 -38.61339 -37.54230 -36.54086 -35.62017 -34.62821 -34.33398 -32.01935 -30.39987 -29.59664 -27.58799 -26.27136 -24.52916 -24.20896 -22.88625 -22.26578 -21.36174 -20.23523 -19.38253 -18.69021 -18.31718 -17.47413 -17.32077 -17.24603 -16.96845 -16.75807 -16.02059 -15.86070 -15.59835 -15.22306 -15.15310 -14.90342 -14.86281 -14.11150 -14.09217 -14.02296 -13.87552 -13.61774 -13.01382 -12.94636 -12.86804 -12.78875 -12.76544 -12.51853 -12.38154 -12.22869 -11.95587 -11.81196 -11.60696 -11.50590 -11.06279 -10.85789 -10.74454 -10.06269 -9.98878 -8.91377 -8.31969 -6.47699 -0.17671 0.01671 0.48520 1.05505 1.26940 1.43968 1.44878 1.58437 2.03439 2.08836 2.35741 2.50749 2.68591 3.03670 3.41027 3.63893 3.81182 3.98907 3.99372 4.02162 4.21807 4.33407 4.38560 4.54992 4.59609 4.67538 4.82416 4.97071 4.98445 5.03807 5.08582 5.17018 5.17501 5.21779 5.25000 5.37599 5.48923 5.54644 5.77423 5.90945 6.26700 6.45767 6.57418 6.71668 6.98155 7.25290 8.79781 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.001922 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.367058 B =14562.199506 C =15374.075488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.047 3.953 4 O -0.319 6.319 5 C 0.127 3.873 6 C -0.167 4.167 7 C -0.078 4.078 8 C 0.103 3.897 9 N -0.628 5.628 10 C 0.519 3.481 11 O -0.518 6.518 12 C 0.495 3.505 13 O -0.555 6.555 14 N -0.673 5.673 15 C 0.262 3.738 16 C -0.562 4.562 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.981 3.019 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.277 1.277 24 C -0.090 4.090 25 C -0.069 4.069 26 Cl -0.062 7.062 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.434 0.566 37 H 0.413 0.587 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.271 0.729 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.106 -20.993 3.585 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.027 4.027 4 O -0.233 6.233 5 C 0.079 3.921 6 C -0.187 4.187 7 C -0.098 4.098 8 C 0.009 3.991 9 N -0.276 5.276 10 C 0.301 3.699 11 O -0.393 6.393 12 C 0.275 3.725 13 O -0.435 6.435 14 N -0.323 5.323 15 C 0.141 3.859 16 C -0.600 4.600 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.111 4.111 25 C -0.097 4.097 26 Cl -0.033 7.033 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.275 0.725 37 H 0.249 0.751 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.822 -21.095 3.620 32.025 hybrid contribution 1.158 0.405 -0.312 1.266 sum -22.664 -20.690 3.308 30.865 Atomic orbital electron populations 1.21676 0.92718 1.03085 1.02864 1.21491 0.97143 0.94155 1.03255 1.23258 0.76321 1.00058 1.03061 1.86153 1.23435 1.25664 1.88062 1.18749 0.89828 0.86271 0.97227 1.21356 1.01802 0.89642 1.05851 1.21173 0.90948 0.99951 0.97741 1.17612 0.92326 0.83674 1.05476 1.42956 1.20725 1.12149 1.51810 1.20129 0.82309 0.87889 0.79601 1.90774 1.66958 1.42371 1.39169 1.20132 0.82951 0.88044 0.81387 1.90719 1.67962 1.42963 1.41867 1.46168 1.19949 1.18271 1.47867 1.18855 0.90806 0.79990 0.96298 1.21600 1.05313 1.00949 1.32119 0.90315 1.25933 1.02161 0.94340 0.96452 1.70098 1.39073 1.04185 1.42861 0.85156 0.77602 0.78791 0.77980 1.18312 1.20201 1.20267 1.20810 1.00974 0.89598 0.99668 1.20006 0.89497 0.88171 1.12008 1.98357 1.72205 1.35628 1.97131 0.91610 0.91739 0.91378 0.91521 0.91354 0.90354 0.90079 0.80438 0.81020 0.72514 0.75085 0.97463 0.97558 0.92043 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 71.98 0.71 0.00 16 2 C -0.12 -1.07 6.30 30.59 0.19 -0.87 16 3 C 0.05 0.46 4.74 71.98 0.34 0.80 16 4 O -0.32 -5.73 9.59 -93.32 -0.89 -6.62 16 5 C 0.13 2.46 6.68 22.53 0.15 2.61 16 6 C -0.17 -2.28 9.03 22.34 0.20 -2.07 16 7 C -0.08 -1.17 9.96 22.40 0.22 -0.95 16 8 C 0.10 2.32 6.28 38.19 0.24 2.56 16 9 N -0.63 -15.55 5.33 -304.75 -1.62 -17.17 16 10 C 0.52 16.83 7.62 87.24 0.66 17.49 16 11 O -0.52 -18.40 14.16 -3.38 -0.05 -18.45 16 12 C 0.49 19.50 7.89 87.23 0.69 20.19 16 13 O -0.56 -24.12 16.48 -3.27 -0.05 -24.17 16 14 N -0.67 -29.12 5.54 -468.25 -2.59 -31.71 16 15 C 0.26 13.88 5.43 85.63 0.46 14.35 16 16 C -0.56 -30.37 9.28 25.60 0.24 -30.13 16 17 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 18 C 0.01 0.63 5.46 84.66 0.46 1.10 16 19 N -0.92 -53.88 13.29 21.45 0.28 -53.59 16 20 Si 0.98 42.20 29.54 68.60 2.03 44.22 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.09 -2.35 8.43 22.41 0.19 -2.16 16 25 C -0.07 -1.68 6.33 22.40 0.14 -1.53 16 26 Cl -0.06 -1.55 28.50 -2.72 -0.08 -1.62 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.55 7.65 -2.38 -0.02 0.53 16 33 H 0.08 0.52 7.67 -2.39 -0.02 0.50 16 34 H 0.18 1.09 6.29 -2.91 -0.02 1.07 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.43 8.97 8.30 -92.71 -0.77 8.20 16 37 H 0.41 16.47 7.79 -92.70 -0.72 15.75 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.13 3.99 6.41 -2.91 -0.02 3.97 16 Total: -1.00 -68.92 372.14 1.53 -67.39 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.40 Total: 20.37 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 4.91 Total: 21.36 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -3.93 Total: -102.48 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.00 Total: -49.24 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.62 kcal Total: -68.92 1.53 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427851891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.724 kcal (2) G-P(sol) polarization free energy of solvation -68.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds