Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46829 * 2 1 4 4 O 1.42895 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.35974 * 116.99989 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.07304 * 359.73591 * 5 4 3 7 7 C 1.38249 * 120.02836 * 179.71812 * 6 5 4 8 8 C 1.38407 * 120.18275 * 0.55073 * 7 6 5 9 9 Cl 1.73595 * 119.92693 * 179.74256 * 8 7 6 10 10 C 1.38262 * 120.14879 * 359.72461 * 8 7 6 11 11 C 1.38802 * 119.96579 * 0.02562 * 10 8 7 12 12 N 1.39868 * 120.08868 * 179.97438 * 11 10 8 13 13 C 1.34777 * 120.00589 * 24.82139 * 12 11 10 14 14 O 1.21393 * 119.99333 * 5.53006 * 13 12 11 15 15 C 1.49331 * 120.00287 * 185.53081 * 13 12 11 16 16 O 1.21362 * 119.99815 * 359.97438 * 15 13 12 17 17 N 1.34772 * 119.99735 * 179.97438 * 15 13 12 18 18 C 1.46502 * 119.99862 * 180.02562 * 17 15 13 19 19 C 1.50705 * 109.47290 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99716 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99695 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00623 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99525 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00022 * 23 21 19 25 25 H 1.48497 * 109.47308 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47432 * 299.99859 * 23 21 19 27 27 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47561 * 299.99366 * 1 2 3 29 29 H 1.09005 * 109.47369 * 60.00059 * 1 2 3 30 30 H 1.09004 * 109.47405 * 240.00920 * 2 1 3 31 31 H 1.08997 * 109.47517 * 120.00212 * 2 1 3 32 32 H 1.08997 * 109.47244 * 300.00379 * 3 2 1 33 33 H 1.09004 * 109.46375 * 60.00289 * 3 2 1 34 34 H 1.07997 * 119.98690 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.90716 * 180.27102 * 7 6 5 36 36 H 1.07995 * 120.01656 * 180.02562 * 10 8 7 37 37 H 0.97007 * 119.99566 * 204.82165 * 12 11 10 38 38 H 0.97005 * 120.00532 * 359.97438 * 17 15 13 39 39 H 1.08998 * 109.46915 * 300.00199 * 18 17 15 40 40 H 1.09002 * 109.47041 * 59.99816 * 18 17 15 41 41 H 0.96999 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0861 2.6542 0.0001 6 6 3.3330 3.8170 -0.0064 7 6 3.9616 5.0484 -0.0010 8 6 5.3435 5.1242 -0.0005 9 17 6.1259 6.6739 -0.0004 10 6 6.1024 3.9685 0.0003 11 6 5.4778 2.7290 0.0001 12 7 6.2430 1.5582 0.0003 13 6 7.4983 1.5735 0.4907 14 8 7.9297 2.5756 1.0231 15 6 8.3585 0.3579 0.3791 16 8 7.9271 -0.6440 -0.1528 17 7 9.6139 0.3736 0.8690 18 6 10.4581 -0.8188 0.7590 19 6 11.8034 -0.5408 1.3787 20 1 12.0091 0.4273 1.8109 21 6 12.7717 -1.5221 1.3930 22 7 12.5213 -2.7009 0.8664 23 14 14.4395 -1.1773 2.1605 24 1 14.2624 -0.8271 3.5928 25 1 15.2951 -2.3859 2.0492 26 1 15.0867 -0.0450 1.4505 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6765 1.9563 0.8901 34 1 2.2545 3.7616 -0.0116 35 1 3.3725 5.9536 -0.0017 36 1 7.1806 4.0302 0.0011 37 1 5.8702 0.7350 -0.3525 38 1 9.9590 1.1745 1.2938 39 1 9.9825 -1.6499 1.2797 40 1 10.5888 -1.0757 -0.2922 41 1 13.2028 -3.3911 0.8761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427896051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -95.486119 kcal Electronic energy + Delta-G solvation = -26104.110063 eV Core-core repulsion = 22010.217096 eV Total energy + Delta-G solvation = -4093.892966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21129 -39.96955 -38.40793 -37.73452 -36.48457 -35.20175 -34.33363 -34.12208 -32.38496 -30.59219 -29.70368 -27.75494 -26.96834 -25.02979 -23.47414 -22.60030 -22.03403 -21.37790 -19.93418 -19.00188 -18.30924 -17.52166 -16.75365 -16.71590 -16.11993 -15.86055 -15.58293 -15.26971 -15.01874 -14.66902 -14.53513 -14.36272 -14.17879 -13.76535 -13.39024 -13.18781 -13.07491 -12.73625 -12.41946 -12.28186 -12.11349 -12.05665 -11.93465 -11.47476 -11.40753 -11.28882 -11.07179 -10.95490 -10.91025 -10.89552 -10.59498 -10.33098 -9.50724 -9.17783 -8.85389 -8.83341 -8.14118 -8.04242 -6.22459 -4.30003 0.77452 0.92566 1.79369 1.95659 2.52333 2.75678 3.25123 3.27721 3.29600 3.31871 3.65205 3.99763 4.30546 4.32877 4.44715 4.50539 4.58445 4.75247 4.84320 4.97069 4.98577 5.00144 5.12246 5.14264 5.21545 5.40882 5.47304 5.56210 5.64176 5.76674 5.80873 5.94537 6.02611 6.39312 6.90708 7.01713 7.06863 7.18184 7.35173 7.53583 7.79421 7.86082 8.35420 8.54193 8.81329 9.36307 10.87563 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.002610 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.256720 B =10724.200296 C =13212.369571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.060 3.940 4 O -0.312 6.312 5 C 0.109 3.891 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.049 4.049 9 Cl -0.066 7.066 10 C -0.089 4.089 11 C 0.139 3.861 12 N -0.638 5.638 13 C 0.508 3.492 14 O -0.503 6.503 15 C 0.492 3.508 16 O -0.533 6.533 17 N -0.669 5.669 18 C 0.247 3.753 19 C -0.547 4.547 20 H 0.066 0.934 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.429 0.571 38 H 0.405 0.595 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.235 13.050 -2.824 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.015 4.015 4 O -0.225 6.225 5 C 0.061 3.939 6 C -0.197 4.197 7 C -0.110 4.110 8 C -0.076 4.076 9 Cl -0.037 7.037 10 C -0.110 4.110 11 C 0.042 3.958 12 N -0.284 5.284 13 C 0.291 3.709 14 O -0.377 6.377 15 C 0.271 3.729 16 O -0.412 6.412 17 N -0.319 5.319 18 C 0.127 3.873 19 C -0.585 4.585 20 H 0.084 0.916 21 C -0.138 4.138 22 N -0.523 5.523 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.183 0.817 37 H 0.268 0.732 38 H 0.240 0.760 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.884 12.699 -2.855 27.200 hybrid contribution 0.717 0.379 0.434 0.920 sum -23.167 13.078 -2.421 26.713 Atomic orbital electron populations 1.21685 0.94162 1.02697 1.02104 1.21511 0.96038 0.94610 1.04222 1.22941 0.77794 0.99254 1.01535 1.86053 1.21825 1.26011 1.88633 1.18687 0.90094 0.85311 0.99788 1.20948 1.00131 0.90897 1.07757 1.20798 0.92293 0.98023 0.99870 1.20552 0.92474 0.86830 1.07742 1.98369 1.81043 1.27225 1.97069 1.21200 1.02473 0.88327 0.99008 1.16918 0.86852 0.86857 1.05128 1.43060 1.13546 1.11850 1.59958 1.20971 0.82245 0.89778 0.77872 1.90705 1.72679 1.33889 1.40423 1.19589 0.83986 0.87227 0.82128 1.90747 1.73201 1.33170 1.44081 1.46423 1.11624 1.19146 1.54659 1.19358 0.88210 0.81420 0.98329 1.21162 0.97287 0.99887 1.40210 0.91567 1.24932 0.99173 0.94683 0.95054 1.69950 1.34912 1.03756 1.43632 0.86419 0.82650 0.77801 0.79765 1.19948 1.21033 1.19936 0.91592 0.92387 0.92391 0.90511 0.90526 0.91787 0.91801 0.84157 0.84566 0.81719 0.73188 0.76032 0.94661 0.94662 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.13 -0.80 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.41 4.74 37.16 0.18 0.59 16 4 O -0.31 -3.25 9.55 -19.66 -0.19 -3.44 16 5 C 0.11 1.21 6.70 -39.05 -0.26 0.95 16 6 C -0.18 -1.57 9.03 -39.47 -0.36 -1.92 16 7 C -0.09 -0.83 9.82 -39.52 -0.39 -1.22 16 8 C -0.05 -0.56 6.32 -39.51 -0.25 -0.81 16 9 Cl -0.07 -0.72 28.95 -51.86 -1.50 -2.22 16 10 C -0.09 -1.19 8.50 -39.36 -0.33 -1.53 16 11 C 0.14 1.84 6.44 -83.56 -0.54 1.31 16 12 N -0.64 -9.26 5.27 -10.19 -0.05 -9.31 16 13 C 0.51 8.64 7.69 -11.64 -0.09 8.55 16 14 O -0.50 -8.96 13.64 5.46 0.07 -8.89 16 15 C 0.49 9.85 7.88 -11.64 -0.09 9.76 16 16 O -0.53 -11.79 16.48 5.49 0.09 -11.70 16 17 N -0.67 -14.34 5.54 -61.95 -0.34 -14.69 16 18 C 0.25 6.36 5.43 -5.19 -0.03 6.33 16 19 C -0.55 -14.68 9.28 -34.44 -0.32 -15.00 16 20 H 0.07 1.68 7.60 -52.49 -0.40 1.28 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 23 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 33 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.17 2.45 5.79 -52.49 -0.30 2.15 16 37 H 0.43 5.89 7.82 -40.82 -0.32 5.57 16 38 H 0.40 8.01 7.79 -40.82 -0.32 7.69 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -30.53 371.07 -7.98 -38.50 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.98 Total: 7.79 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.38 Total: 7.43 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.34 Total: -48.78 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.02 Total: -24.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.53 -7.98 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427896051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.983 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds