Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00215 * 2 1 4 4 C 1.53006 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46909 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46794 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99694 * 179.97438 * 6 5 4 8 8 O 1.21369 * 120.00441 * 0.02562 * 7 6 5 9 9 C 1.49277 * 119.99801 * 179.97438 * 7 6 5 10 10 O 1.21389 * 119.99774 * 0.02562 * 9 7 6 11 11 N 1.34767 * 119.99812 * 180.27786 * 9 7 6 12 12 C 1.38966 * 119.99885 * 175.33011 * 11 9 7 13 13 C 1.39555 * 119.84525 * 29.72347 * 12 11 9 14 14 C 1.36322 * 120.17379 * 179.75927 * 13 12 11 15 15 C 1.40937 * 119.85684 * 0.52074 * 14 13 12 16 16 C 1.41065 * 120.15573 * 179.76295 * 15 14 13 17 17 H 1.08001 * 120.00152 * 152.81320 * 16 15 14 18 18 C 1.39978 * 119.99578 * 332.80971 * 16 15 14 19 19 N 1.30827 * 120.00094 * 347.17924 * 18 16 15 20 20 Si 1.86797 * 119.99728 * 167.17235 * 18 16 15 21 21 H 1.48505 * 109.47246 * 60.00066 * 20 18 16 22 22 H 1.48501 * 109.47131 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47439 * 300.00184 * 20 18 16 24 24 C 1.40885 * 119.69223 * 359.73195 * 15 14 13 25 25 C 1.36433 * 119.82468 * 0.02562 * 24 15 14 26 26 Cl 1.73602 * 119.92978 * 179.97438 * 25 24 15 27 27 H 1.09004 * 109.46960 * 299.99794 * 1 2 3 28 28 H 1.09000 * 109.46983 * 59.99878 * 1 2 3 29 29 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47397 * 60.00231 * 3 2 1 31 31 H 1.09002 * 109.47264 * 300.00352 * 3 2 1 32 32 H 1.09002 * 109.46510 * 60.00284 * 4 3 2 33 33 H 1.08996 * 109.47144 * 299.99977 * 4 3 2 34 34 H 1.08998 * 109.47708 * 60.00010 * 5 4 3 35 35 H 1.09003 * 109.47721 * 299.99860 * 5 4 3 36 36 H 0.96995 * 120.00366 * 359.97438 * 6 5 4 37 37 H 0.97008 * 120.00690 * 355.33018 * 11 9 7 38 38 H 1.08003 * 119.91498 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.06922 * 180.25034 * 14 13 12 40 40 H 0.97002 * 119.99753 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.08520 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5822 0.0013 6 7 5.6182 2.4665 0.0013 7 6 6.3821 3.5769 0.0013 8 8 5.8602 4.6726 0.0018 9 6 7.8702 3.4590 0.0019 10 8 8.3922 2.3630 0.0019 11 7 8.6341 4.5693 0.0075 12 6 10.0161 4.4613 0.1061 13 6 10.6630 3.3353 -0.4050 14 6 12.0188 3.2248 -0.3164 15 6 12.7670 4.2460 0.3031 16 6 14.1698 4.1358 0.4027 17 1 14.7792 5.0260 0.4530 18 6 14.7719 2.8725 0.4364 19 7 14.0411 1.8045 0.6282 20 14 16.6187 2.7118 0.2074 21 1 17.3179 3.4711 1.2751 22 1 17.0045 1.2799 0.2854 23 1 17.0023 3.2567 -1.1197 24 6 12.1074 5.3777 0.8218 25 6 10.7504 5.4775 0.7217 26 17 9.9349 6.8705 1.3605 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8892 33 1 3.8567 0.6438 0.8908 34 1 3.8358 3.1230 0.8912 35 1 3.8366 3.1235 -0.8887 36 1 6.0354 1.5909 0.0013 37 1 8.2194 5.4438 -0.0572 38 1 10.0883 2.5514 -0.8759 39 1 12.5181 2.3545 -0.7161 40 1 14.4584 0.9291 0.6520 41 1 12.6746 6.1642 1.2974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453567563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -124.505730 kcal Electronic energy + Delta-G solvation = -25689.738036 eV Core-core repulsion = 21594.586685 eV Total energy + Delta-G solvation = -4095.151351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.99844 -40.35099 -39.10686 -38.89738 -37.35531 -36.89825 -36.13083 -34.82866 -32.99061 -31.52237 -30.92103 -28.46300 -27.49957 -26.30860 -24.68233 -23.47077 -22.82208 -22.60083 -21.19488 -19.75806 -19.41002 -18.36286 -17.63596 -17.47149 -17.44932 -17.08496 -16.85341 -16.36291 -16.18920 -15.88106 -15.71574 -15.31292 -15.12412 -14.81395 -14.68115 -14.35271 -14.09459 -13.70569 -13.41624 -13.24364 -13.01520 -12.89164 -12.81412 -12.66145 -12.50656 -12.17548 -12.11336 -12.04608 -12.03848 -11.98362 -11.62070 -11.37606 -10.82346 -10.62160 -10.49954 -10.36776 -9.48341 -8.97451 -8.67416 -6.38200 0.10324 0.80406 0.89040 1.22605 1.33658 1.42646 1.51870 1.54680 2.10571 2.20850 2.53261 2.67049 2.90722 3.37879 3.57197 3.92563 3.99009 4.12079 4.25271 4.42660 4.48699 4.50547 4.57396 4.63887 4.76251 4.78697 4.87761 4.93296 4.98903 5.05840 5.11291 5.16305 5.19815 5.37898 5.50732 5.84257 5.93831 5.96780 6.11369 6.21665 6.36172 6.53181 6.69203 6.81248 6.81636 6.96893 8.27353 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.002151 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.973442 B =13015.813902 C =14556.528926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.125 4.125 5 C 0.121 3.879 6 N -0.687 5.687 7 C 0.521 3.479 8 O -0.538 6.538 9 C 0.489 3.511 10 O -0.532 6.532 11 N -0.610 5.610 12 C 0.000 4.000 13 C -0.087 4.087 14 C -0.168 4.168 15 C 0.089 3.911 16 C -0.479 4.479 17 H 0.087 0.913 18 C 0.033 3.967 19 N -0.818 5.818 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.213 4.213 25 C -0.008 4.008 26 Cl -0.083 7.083 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.420 0.580 37 H 0.418 0.582 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.292 0.708 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.238 -1.490 -1.766 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.163 4.163 5 C -0.001 4.001 6 N -0.341 5.341 7 C 0.301 3.699 8 O -0.416 6.416 9 C 0.271 3.729 10 O -0.409 6.409 11 N -0.255 5.255 12 C -0.095 4.095 13 C -0.107 4.107 14 C -0.188 4.188 15 C 0.086 3.914 16 C -0.507 4.507 17 H 0.105 0.895 18 C -0.183 4.183 19 N -0.443 5.443 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.234 4.234 25 C -0.036 4.036 26 Cl -0.055 7.055 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.258 0.742 37 H 0.256 0.744 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.278 -1.790 -1.657 19.432 hybrid contribution 0.564 0.155 0.107 0.595 sum -18.714 -1.634 -1.550 18.849 Atomic orbital electron populations 1.22924 0.79341 1.03789 1.00990 1.87821 1.21580 1.28763 1.95671 1.22420 0.92544 0.84619 1.01801 1.21596 0.94418 0.95603 1.04686 1.21445 0.76902 0.98015 1.03732 1.45696 1.07701 1.08994 1.71665 1.19669 0.86902 0.85314 0.78036 1.90750 1.74501 1.26913 1.49425 1.20415 0.88654 0.84701 0.79116 1.90729 1.74424 1.26946 1.48817 1.42539 1.04626 1.09965 1.68386 1.16928 0.81664 0.98788 1.12128 1.20781 0.94514 0.96319 0.99113 1.21105 0.92771 1.01435 1.03510 1.17908 0.94307 0.90645 0.88570 1.19849 0.92049 0.94154 1.44650 0.89488 1.26859 1.05909 0.94482 0.91079 1.69846 1.40406 1.00521 1.33531 0.85144 0.75440 0.78360 0.80188 1.18242 1.19397 1.18195 1.20675 0.91402 1.02299 1.09019 1.20247 0.92663 0.89255 1.01436 1.98273 1.79648 1.41850 1.85716 0.93077 0.93023 0.88769 0.91856 0.91727 0.89940 0.90115 0.90218 0.89994 0.74196 0.74384 0.85522 0.86789 0.89734 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.64 10.70 -148.98 -1.59 -8.23 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.13 -1.59 5.70 30.59 0.17 -1.42 16 5 C 0.12 1.89 5.67 86.38 0.49 2.38 16 6 N -0.69 -14.76 5.55 -464.58 -2.58 -17.34 16 7 C 0.52 15.04 7.88 87.22 0.69 15.73 16 8 O -0.54 -17.01 16.48 -3.31 -0.05 -17.07 16 9 C 0.49 17.26 7.74 87.22 0.68 17.94 16 10 O -0.53 -21.15 13.55 -3.37 -0.05 -21.19 16 11 N -0.61 -22.75 5.07 -304.45 -1.54 -24.29 16 12 C 0.00 -0.02 6.40 38.68 0.25 0.23 16 13 C -0.09 -4.17 8.66 22.14 0.19 -3.98 16 14 C -0.17 -8.70 8.61 22.48 0.19 -8.50 16 15 C 0.09 4.61 5.56 -21.28 -0.12 4.49 16 16 C -0.48 -24.30 9.05 23.39 0.21 -24.09 16 17 H 0.09 4.17 7.88 -2.91 -0.02 4.15 16 18 C 0.03 1.57 5.22 85.26 0.45 2.02 16 19 N -0.82 -41.26 10.83 21.83 0.24 -41.03 16 20 Si 0.99 36.20 29.58 68.60 2.03 38.23 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 24 C -0.21 -10.06 9.50 22.50 0.21 -9.85 16 25 C -0.01 -0.33 6.30 22.19 0.14 -0.19 16 26 Cl -0.08 -2.98 27.83 -2.72 -0.08 -3.05 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.42 8.38 7.94 -92.71 -0.74 7.64 16 37 H 0.42 14.17 7.36 -92.70 -0.68 13.49 16 38 H 0.13 5.95 5.78 -2.91 -0.02 5.94 16 39 H 0.11 6.14 6.16 -2.91 -0.02 6.13 16 40 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 41 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -61.20 368.91 1.28 -59.92 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.32 Total: 36.64 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.23 Total: -2.58 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -3.89 Total: -82.66 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.69 Total: -46.50 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.08 Total: -3.05 kcal Total: -61.20 1.28 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453567563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.583 kcal (2) G-P(sol) polarization free energy of solvation -61.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds