Wall clock time and date at job start Sat Apr 11 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00157 * 2 1 4 4 C 1.53007 * 109.46921 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47240 * 65.00236 * 4 3 2 6 6 C 1.46503 * 119.99648 * 270.00283 * 5 4 3 7 7 C 1.34770 * 119.99586 * 89.99661 * 5 4 3 8 8 O 1.21374 * 120.00852 * 3.31437 * 7 5 4 9 9 C 1.49272 * 119.99425 * 183.30391 * 7 5 4 10 10 O 1.21392 * 120.00215 * 353.94142 * 9 7 5 11 11 N 1.34783 * 119.99771 * 174.20825 * 9 7 5 12 12 C 1.38960 * 119.99781 * 183.79027 * 11 9 7 13 13 C 1.39553 * 119.84535 * 334.09029 * 12 11 9 14 14 C 1.36324 * 120.17248 * 179.72285 * 13 12 11 15 15 C 1.40940 * 119.85635 * 0.57836 * 14 13 12 16 16 C 1.41061 * 120.15172 * 179.72359 * 15 14 13 17 17 H 1.08007 * 119.99968 * 214.41570 * 16 15 14 18 18 C 1.39979 * 120.00284 * 34.41339 * 16 15 14 19 19 N 1.30828 * 120.00085 * 5.42742 * 18 16 15 20 20 Si 1.86797 * 119.99896 * 185.42276 * 18 16 15 21 21 H 1.48498 * 109.47450 * 59.99921 * 20 18 16 22 22 H 1.48498 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47139 * 299.99963 * 20 18 16 24 24 C 1.40886 * 119.69123 * 359.69610 * 15 14 13 25 25 C 1.36425 * 119.82180 * 0.02562 * 24 15 14 26 26 Cl 1.73604 * 119.92523 * 180.02562 * 25 24 15 27 27 H 1.09004 * 109.46878 * 299.99857 * 1 2 3 28 28 H 1.09006 * 109.47499 * 59.99141 * 1 2 3 29 29 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46868 * 60.00988 * 3 2 1 31 31 H 1.08995 * 109.47428 * 300.00346 * 3 2 1 32 32 H 1.09000 * 109.47219 * 305.00075 * 4 3 2 33 33 H 1.08996 * 109.46741 * 185.00556 * 4 3 2 34 34 H 1.09003 * 109.46597 * 264.09798 * 6 5 4 35 35 H 1.08988 * 109.47440 * 24.10017 * 6 5 4 36 36 H 1.09002 * 109.46714 * 144.10818 * 6 5 4 37 37 H 0.96998 * 119.99821 * 3.78613 * 11 9 7 38 38 H 1.07999 * 119.91397 * 0.02562 * 13 12 11 39 39 H 1.08001 * 120.07408 * 180.25075 * 14 13 12 40 40 H 0.96991 * 119.99910 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.08260 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8922 -1.3428 7 6 4.2615 1.3337 -2.3217 8 8 4.2124 2.5429 -2.2298 9 6 4.6387 0.6985 -3.6188 10 8 4.7954 -0.5035 -3.6832 11 7 4.8105 1.4604 -4.7174 12 6 5.0841 0.8625 -5.9416 13 6 5.7025 -0.3879 -5.9811 14 6 5.9689 -0.9830 -7.1783 15 6 5.6294 -0.3273 -8.3788 16 6 5.9074 -0.9348 -9.6211 17 1 6.1854 -0.3268 -10.4694 18 6 5.8233 -2.3257 -9.7546 19 7 5.3848 -3.0530 -8.7594 20 14 6.3369 -3.1433 -11.3536 21 1 7.7651 -2.8425 -11.6270 22 1 6.1530 -4.6124 -11.2398 23 1 5.5002 -2.6249 -12.4657 24 6 5.0104 0.9375 -8.3321 25 6 4.7446 1.5187 -7.1269 26 17 3.9814 3.0768 -7.0663 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8462 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5680 0.8409 33 1 3.9786 2.1763 0.0890 34 1 5.1407 -1.1771 -1.1572 35 1 3.4605 -1.3609 -0.5994 36 1 3.8105 -1.2222 -2.3390 37 1 4.7432 2.4259 -4.6534 38 1 5.9664 -0.8876 -5.0607 39 1 6.4439 -1.9525 -7.2069 40 1 5.3262 -4.0167 -8.8520 41 1 4.7471 1.4454 -9.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453609799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:26 Heat of formation + Delta-G solvation = -80.699672 kcal Electronic energy + Delta-G solvation = -26940.363957 eV Core-core repulsion = 22847.112179 eV Total energy + Delta-G solvation = -4093.251778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77668 -39.06678 -37.99380 -37.39928 -35.86097 -35.68545 -34.44070 -33.04199 -30.69253 -29.67614 -29.13647 -26.98582 -26.65749 -25.61201 -24.23562 -22.45492 -21.65164 -20.71275 -19.40655 -17.79589 -17.56574 -17.12176 -16.67360 -16.40987 -16.03261 -15.80978 -15.43430 -15.09405 -14.89533 -14.45127 -14.16628 -13.88898 -13.39358 -13.11063 -12.92365 -12.73150 -12.68000 -12.43432 -12.29754 -12.22232 -12.14826 -11.80382 -11.54109 -11.37594 -11.25795 -11.00964 -10.85795 -10.56598 -10.41987 -10.20159 -9.97870 -9.89909 -9.61073 -9.11513 -8.88922 -8.59340 -7.66280 -7.09054 -6.82650 -4.50450 1.52028 2.45120 2.56144 2.72273 2.98018 3.02793 3.05863 3.06432 3.46554 3.57109 3.74881 3.86865 4.51030 4.63610 4.77660 4.84735 4.98560 5.12774 5.13680 5.29221 5.39187 5.41150 5.45222 5.54561 5.76134 6.02720 6.10698 6.28924 6.52612 6.57861 6.75433 6.83500 6.92997 7.01607 7.08294 7.20217 7.29075 7.64764 7.70304 7.85425 7.96277 8.05737 8.40036 8.42866 8.69330 8.73235 10.11705 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002876 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.666391 B = 9732.852922 C =10741.069904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.043 3.957 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.068 3.932 7 C 0.509 3.491 8 O -0.531 6.531 9 C 0.489 3.511 10 O -0.503 6.503 11 N -0.610 5.610 12 C 0.005 3.995 13 C -0.092 4.092 14 C -0.138 4.138 15 C 0.116 3.884 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.796 5.796 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.197 4.197 25 C -0.010 4.010 26 Cl -0.117 7.117 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.284 0.716 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 4.124 14.422 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.034 4.034 4 C -0.007 4.007 5 N -0.315 5.315 6 C -0.074 4.074 7 C 0.292 3.708 8 O -0.408 6.408 9 C 0.272 3.728 10 O -0.380 6.380 11 N -0.254 5.254 12 C -0.089 4.089 13 C -0.111 4.111 14 C -0.158 4.158 15 C 0.112 3.888 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.421 5.421 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.218 4.218 25 C -0.038 4.038 26 Cl -0.089 7.089 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.247 0.753 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.709 3.631 14.526 15.696 hybrid contribution -0.370 0.422 -0.619 0.836 sum -5.079 4.053 13.907 15.350 Atomic orbital electron populations 1.22734 0.80996 1.02822 0.99877 1.87886 1.19752 1.27528 1.95421 1.23016 0.94159 0.85284 1.00980 1.21640 0.92345 1.00668 0.86075 1.47606 1.64330 1.08796 1.10741 1.22440 1.01602 0.77219 1.06115 1.20312 0.78335 0.86842 0.85305 1.90725 1.52118 1.13735 1.84229 1.19830 0.80798 0.87149 0.85069 1.90615 1.49258 1.13857 1.84311 1.42633 1.65620 1.10634 1.06498 1.16982 1.12867 0.97550 0.81458 1.20949 0.97686 0.92963 0.99546 1.21166 1.02770 1.01156 0.90749 1.17617 0.87761 0.89470 0.93914 1.19489 1.40818 0.91687 0.96567 0.90089 1.25930 0.92659 0.97543 0.98470 1.69748 1.32854 1.07727 1.31767 0.86221 0.80163 0.78043 0.81463 1.18797 1.20250 1.18952 1.20653 1.07631 0.99367 0.94130 1.20200 1.02964 0.86389 0.94297 1.98271 1.81498 1.30350 1.98750 0.94222 0.94062 0.89547 0.92152 0.92693 0.89094 0.87996 0.92485 0.90967 0.87303 0.75320 0.84781 0.85521 0.90525 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.18 9.64 -35.23 -0.34 -4.52 16 3 C 0.04 0.42 6.28 37.16 0.23 0.66 16 4 C 0.12 1.16 5.81 -4.04 -0.02 1.14 16 5 N -0.58 -7.68 2.84 -182.15 -0.52 -8.20 16 6 C 0.07 0.85 9.30 59.85 0.56 1.41 16 7 C 0.51 8.13 7.73 -11.67 -0.09 8.04 16 8 O -0.53 -9.04 16.04 5.48 0.09 -8.95 16 9 C 0.49 8.93 7.64 -11.67 -0.09 8.84 16 10 O -0.50 -9.83 10.02 5.46 0.05 -9.77 16 11 N -0.61 -11.65 5.14 -10.17 -0.05 -11.70 16 12 C 0.01 0.12 6.46 -83.61 -0.54 -0.42 16 13 C -0.09 -2.12 8.71 -39.78 -0.35 -2.47 16 14 C -0.14 -3.44 8.57 -39.25 -0.34 -3.77 16 15 C 0.12 2.91 5.50 -106.80 -0.59 2.32 16 16 C -0.46 -11.40 9.02 -37.86 -0.34 -11.74 16 17 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 18 C 0.07 1.72 5.31 -17.33 -0.09 1.63 16 19 N -0.80 -19.80 10.96 55.55 0.61 -19.19 16 20 Si 0.92 17.96 29.56 -169.99 -5.03 12.93 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.20 -4.60 9.50 -39.23 -0.37 -4.97 16 25 C -0.01 -0.23 6.30 -39.70 -0.25 -0.48 16 26 Cl -0.12 -2.17 27.75 -51.86 -1.44 -3.61 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.10 1.00 7.38 -51.93 -0.38 0.62 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.79 7.24 -51.94 -0.38 0.41 16 36 H 0.11 1.65 5.37 -51.93 -0.28 1.37 16 37 H 0.41 7.30 7.22 -40.82 -0.29 7.01 16 38 H 0.13 3.04 5.50 -52.49 -0.29 2.75 16 39 H 0.13 3.24 6.47 -52.49 -0.34 2.91 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.11 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -27.64 360.74 -7.24 -34.88 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.89 Total: 11.12 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.17 Total: 1.56 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.04 Total: -39.09 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.20 Total: -23.24 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.44 Total: -3.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.64 -7.24 -34.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453609799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.817 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds