Wall clock time and date at job start Sat Apr 11 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00157 * 2 1 4 4 C 1.53007 * 109.46921 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47240 * 65.00236 * 4 3 2 6 6 C 1.46503 * 119.99648 * 270.00283 * 5 4 3 7 7 C 1.34770 * 119.99586 * 89.99661 * 5 4 3 8 8 O 1.21374 * 120.00852 * 3.31437 * 7 5 4 9 9 C 1.49272 * 119.99425 * 183.30391 * 7 5 4 10 10 O 1.21392 * 120.00215 * 353.94142 * 9 7 5 11 11 N 1.34783 * 119.99771 * 174.20825 * 9 7 5 12 12 C 1.38960 * 119.99781 * 183.79027 * 11 9 7 13 13 C 1.39553 * 119.84535 * 334.09029 * 12 11 9 14 14 C 1.36324 * 120.17248 * 179.72285 * 13 12 11 15 15 C 1.40940 * 119.85635 * 0.57836 * 14 13 12 16 16 C 1.41061 * 120.15172 * 179.72359 * 15 14 13 17 17 H 1.08007 * 119.99968 * 214.41570 * 16 15 14 18 18 C 1.39979 * 120.00284 * 34.41339 * 16 15 14 19 19 N 1.30828 * 120.00085 * 5.42742 * 18 16 15 20 20 Si 1.86797 * 119.99896 * 185.42276 * 18 16 15 21 21 H 1.48498 * 109.47450 * 59.99921 * 20 18 16 22 22 H 1.48498 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47139 * 299.99963 * 20 18 16 24 24 C 1.40886 * 119.69123 * 359.69610 * 15 14 13 25 25 C 1.36425 * 119.82180 * 0.02562 * 24 15 14 26 26 Cl 1.73604 * 119.92523 * 180.02562 * 25 24 15 27 27 H 1.09004 * 109.46878 * 299.99857 * 1 2 3 28 28 H 1.09006 * 109.47499 * 59.99141 * 1 2 3 29 29 H 1.08999 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46868 * 60.00988 * 3 2 1 31 31 H 1.08995 * 109.47428 * 300.00346 * 3 2 1 32 32 H 1.09000 * 109.47219 * 305.00075 * 4 3 2 33 33 H 1.08996 * 109.46741 * 185.00556 * 4 3 2 34 34 H 1.09003 * 109.46597 * 264.09798 * 6 5 4 35 35 H 1.08988 * 109.47440 * 24.10017 * 6 5 4 36 36 H 1.09002 * 109.46714 * 144.10818 * 6 5 4 37 37 H 0.96998 * 119.99821 * 3.78613 * 11 9 7 38 38 H 1.07999 * 119.91397 * 0.02562 * 13 12 11 39 39 H 1.08001 * 120.07408 * 180.25075 * 14 13 12 40 40 H 0.96991 * 119.99910 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.08260 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8922 -1.3428 7 6 4.2615 1.3337 -2.3217 8 8 4.2124 2.5429 -2.2298 9 6 4.6387 0.6985 -3.6188 10 8 4.7954 -0.5035 -3.6832 11 7 4.8105 1.4604 -4.7174 12 6 5.0841 0.8625 -5.9416 13 6 5.7025 -0.3879 -5.9811 14 6 5.9689 -0.9830 -7.1783 15 6 5.6294 -0.3273 -8.3788 16 6 5.9074 -0.9348 -9.6211 17 1 6.1854 -0.3268 -10.4694 18 6 5.8233 -2.3257 -9.7546 19 7 5.3848 -3.0530 -8.7594 20 14 6.3369 -3.1433 -11.3536 21 1 7.7651 -2.8425 -11.6270 22 1 6.1530 -4.6124 -11.2398 23 1 5.5002 -2.6249 -12.4657 24 6 5.0104 0.9375 -8.3321 25 6 4.7446 1.5187 -7.1269 26 17 3.9814 3.0768 -7.0663 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8462 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5680 0.8409 33 1 3.9786 2.1763 0.0890 34 1 5.1407 -1.1771 -1.1572 35 1 3.4605 -1.3609 -0.5994 36 1 3.8105 -1.2222 -2.3390 37 1 4.7432 2.4259 -4.6534 38 1 5.9664 -0.8876 -5.0607 39 1 6.4439 -1.9525 -7.2069 40 1 5.3262 -4.0167 -8.8520 41 1 4.7471 1.4454 -9.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453609799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:25 Heat of formation + Delta-G solvation = -97.000056 kcal Electronic energy + Delta-G solvation = -26941.070794 eV Core-core repulsion = 22847.112179 eV Total energy + Delta-G solvation = -4093.958616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16923 -40.47057 -39.15069 -38.75835 -37.36740 -37.06461 -35.98681 -34.76815 -31.68385 -31.38463 -30.91112 -28.10676 -27.69189 -26.94280 -25.48087 -23.83952 -23.31406 -22.29445 -20.81175 -19.39050 -19.13593 -18.40779 -17.83673 -17.55269 -17.16358 -17.09171 -16.78921 -16.29995 -16.16668 -16.01585 -15.54556 -15.11878 -14.92354 -14.77565 -14.38470 -14.14838 -14.02653 -13.75239 -13.52562 -13.28865 -13.16480 -13.10452 -12.89445 -12.85432 -12.56705 -12.35713 -12.20334 -12.07203 -12.03407 -11.98721 -11.59103 -11.31866 -10.84761 -10.69536 -10.20357 -9.86538 -9.47671 -8.87836 -8.61159 -6.38699 0.08452 0.81861 0.87868 1.20858 1.31868 1.42965 1.51201 1.54236 2.07896 2.23047 2.45247 2.71295 2.82059 3.24211 3.54200 4.00895 4.04397 4.23699 4.28985 4.40760 4.48851 4.54001 4.55772 4.67790 4.72582 4.73263 4.81946 4.86100 4.91941 5.10567 5.16798 5.21891 5.28380 5.39501 5.52357 5.84344 5.88045 5.99492 6.09589 6.17342 6.26718 6.54223 6.64137 6.81666 6.85688 6.96447 8.35210 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002876 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.666391 B = 9732.852922 C =10741.069904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.045 3.955 4 C 0.110 3.890 5 N -0.572 5.572 6 C 0.072 3.928 7 C 0.512 3.488 8 O -0.543 6.543 9 C 0.488 3.512 10 O -0.516 6.516 11 N -0.612 5.612 12 C 0.014 3.986 13 C -0.097 4.097 14 C -0.154 4.154 15 C 0.089 3.911 16 C -0.487 4.487 17 H 0.085 0.915 18 C 0.032 3.968 19 N -0.830 5.830 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.260 1.260 24 C -0.204 4.204 25 C -0.015 4.015 26 Cl -0.084 7.084 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.417 0.583 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.289 0.711 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 4.664 15.754 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.033 4.033 4 C -0.011 4.011 5 N -0.304 5.304 6 C -0.069 4.069 7 C 0.294 3.706 8 O -0.422 6.422 9 C 0.271 3.729 10 O -0.394 6.394 11 N -0.257 5.257 12 C -0.081 4.081 13 C -0.117 4.117 14 C -0.174 4.174 15 C 0.086 3.914 16 C -0.517 4.517 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.456 5.456 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.225 4.225 25 C -0.044 4.044 26 Cl -0.055 7.055 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.342 4.183 15.908 17.295 hybrid contribution -0.276 0.335 -0.831 0.937 sum -5.618 4.518 15.077 16.712 Atomic orbital electron populations 1.22872 0.79843 1.03648 1.00490 1.87844 1.21101 1.28076 1.95558 1.23021 0.93696 0.85116 1.01434 1.21963 0.92766 1.01341 0.85003 1.47741 1.62717 1.08948 1.10957 1.22376 1.02508 0.76896 1.05166 1.19810 0.79057 0.86728 0.85007 1.90722 1.53229 1.13946 1.84274 1.20397 0.79752 0.87006 0.85758 1.90624 1.49329 1.14631 1.84799 1.42606 1.66169 1.11029 1.05908 1.17014 1.11346 0.96957 0.82756 1.20993 0.97950 0.93694 0.99031 1.21080 1.03863 1.00925 0.91557 1.17903 0.88661 0.90541 0.94264 1.19757 1.42405 0.92767 0.96768 0.89737 1.26781 0.92005 0.97649 1.01805 1.69823 1.33793 1.08207 1.33774 0.85151 0.79823 0.77090 0.77072 1.18240 1.19526 1.18458 1.20768 1.07559 0.99032 0.95106 1.20224 1.02594 0.87802 0.93771 1.98273 1.80753 1.27807 1.98693 0.92298 0.94738 0.88724 0.89195 0.94714 0.86342 0.87476 0.91665 0.88880 0.89960 0.74490 0.84624 0.87144 0.90037 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -7.86 9.64 -148.98 -1.44 -9.30 16 3 C 0.04 0.76 6.28 71.98 0.45 1.22 16 4 C 0.11 1.92 5.81 86.38 0.50 2.43 16 5 N -0.57 -14.10 2.84 -848.55 -2.41 -16.51 16 6 C 0.07 1.71 9.30 127.77 1.19 2.90 16 7 C 0.51 15.79 7.73 87.22 0.67 16.47 16 8 O -0.54 -17.76 16.04 -3.32 -0.05 -17.81 16 9 C 0.49 17.64 7.64 87.21 0.67 18.31 16 10 O -0.52 -20.28 10.02 -3.38 -0.03 -20.31 16 11 N -0.61 -23.15 5.14 -304.44 -1.56 -24.72 16 12 C 0.01 0.62 6.46 38.68 0.25 0.87 16 13 C -0.10 -4.60 8.71 22.14 0.19 -4.41 16 14 C -0.15 -7.97 8.57 22.49 0.19 -7.77 16 15 C 0.09 4.64 5.50 -21.28 -0.12 4.53 16 16 C -0.49 -25.02 9.02 23.38 0.21 -24.81 16 17 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 18 C 0.03 1.56 5.31 85.26 0.45 2.01 16 19 N -0.83 -42.48 10.96 21.83 0.24 -42.24 16 20 Si 0.99 36.99 29.56 68.60 2.03 39.02 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 24 C -0.20 -9.65 9.50 22.49 0.21 -9.44 16 25 C -0.02 -0.67 6.30 22.19 0.14 -0.53 16 26 Cl -0.08 -3.00 27.75 -2.72 -0.08 -3.07 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.11 1.81 7.38 -2.39 -0.02 1.79 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.83 7.24 -2.39 -0.02 1.81 16 36 H 0.08 2.46 5.37 -2.44 -0.01 2.45 16 37 H 0.42 14.50 7.22 -92.71 -0.67 13.83 16 38 H 0.14 6.32 5.50 -2.91 -0.02 6.31 16 39 H 0.11 5.97 6.47 -2.91 -0.02 5.95 16 40 H 0.29 13.50 8.30 -92.71 -0.77 12.74 16 41 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -60.24 360.74 3.38 -56.86 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.42 Total: 34.67 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.27 Total: 3.41 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.73 Total: -83.46 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -1.52 Total: -47.42 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.08 Total: -3.07 kcal Total: -60.24 3.38 -56.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453609799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.142 kcal (2) G-P(sol) polarization free energy of solvation -60.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds